Wall clock time and date at job start Tue Mar 31 2020 22:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86791 * 119.99950 * 2 1 4 4 H 1.48498 * 109.47690 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47328 * 120.00622 * 3 2 1 6 6 H 1.48504 * 109.47177 * 239.99835 * 3 2 1 7 7 C 1.40277 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99602 * 160.94300 * 7 2 1 9 9 C 1.40892 * 119.99993 * 340.94173 * 7 2 1 10 10 C 1.40709 * 120.32698 * 325.84525 * 9 7 2 11 11 C 1.37600 * 119.88058 * 180.02562 * 10 9 7 12 12 C 1.38826 * 120.56680 * 0.02562 * 11 10 9 13 13 C 1.38217 * 120.68006 * 359.97438 * 12 11 10 14 14 C 1.39232 * 120.09197 * 359.71249 * 13 12 11 15 15 C 1.47428 * 120.28208 * 180.28466 * 14 13 12 16 16 O 1.21618 * 119.99913 * 177.04861 * 15 14 13 17 17 N 1.34774 * 120.00477 * 357.04743 * 15 14 13 18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46932 * 179.97438 * 18 17 15 20 20 C 1.38249 * 119.96946 * 259.99922 * 19 18 17 21 21 C 1.38200 * 120.11258 * 179.97438 * 20 19 18 22 22 C 1.38240 * 120.11836 * 0.06376 * 21 20 19 23 23 C 1.38658 * 120.06487 * 359.97438 * 22 21 20 24 24 C 1.38662 * 119.97009 * 79.72658 * 19 18 17 25 25 O 1.36107 * 119.39639 * 359.74893 * 24 19 18 26 26 C 1.43169 * 116.69098 * 162.71187 * 25 24 19 27 27 C 1.53475 * 108.24212 * 46.30281 * 26 25 24 28 28 O 1.36100 * 119.41048 * 179.65526 * 23 22 21 29 29 H 0.96993 * 120.00043 * 174.76075 * 1 2 3 30 30 H 1.07999 * 120.06050 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.71280 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.65714 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.95779 * 180.02562 * 13 12 11 34 34 H 0.97004 * 119.99726 * 359.97438 * 17 15 14 35 35 H 1.08997 * 109.47246 * 299.99875 * 18 17 15 36 36 H 1.09003 * 109.47046 * 60.00341 * 18 17 15 37 37 H 1.08002 * 119.94114 * 359.93295 * 20 19 18 38 38 H 1.08000 * 119.94459 * 180.08519 * 21 20 19 39 39 H 1.08004 * 119.96942 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.71419 * 165.99546 * 26 25 24 41 41 H 1.09001 * 109.71214 * 286.61960 * 26 25 24 42 42 H 1.09003 * 109.70077 * 59.97755 * 27 26 25 43 43 H 1.09000 * 109.70773 * 180.54602 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2754 2.7465 0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0941 1.6963 -1.2125 7 6 2.0077 -1.2149 -0.0005 8 1 3.0432 -1.2404 -0.3059 9 6 1.3610 -2.4017 0.3973 10 6 0.3813 -2.3729 1.4069 11 6 -0.2441 -3.5376 1.7887 12 6 0.0833 -4.7449 1.1864 13 6 1.0421 -4.8000 0.1925 14 6 1.6877 -3.6374 -0.2200 15 6 2.7066 -3.6905 -1.2842 16 8 3.2286 -2.6650 -1.6779 17 7 3.0597 -4.8753 -1.8208 18 6 4.0726 -4.9281 -2.8778 19 6 4.2829 -6.3590 -3.3010 20 6 5.3661 -7.0698 -2.8185 21 6 5.5615 -8.3824 -3.2042 22 6 4.6754 -8.9888 -4.0749 23 6 3.5874 -8.2814 -4.5633 24 6 3.3868 -6.9634 -4.1696 25 8 2.3192 -6.2543 -4.6280 26 6 1.6550 -6.7693 -5.7870 27 6 1.4409 -8.2760 -5.5883 28 8 2.7274 -8.8893 -5.4253 29 1 -0.4850 -0.8365 -0.0767 30 1 0.1211 -1.4385 1.8818 31 1 -0.9953 -3.5125 2.5641 32 1 -0.4165 -5.6502 1.4978 33 1 1.2874 -5.7454 -0.2684 34 1 2.6436 -5.6933 -1.5065 35 1 3.7363 -4.3416 -3.7328 36 1 5.0107 -4.5188 -2.5028 37 1 6.0610 -6.5983 -2.1394 38 1 6.4078 -8.9356 -2.8245 39 1 4.8302 -10.0149 -4.3744 40 1 0.6917 -6.2741 -5.9092 41 1 2.2710 -6.5989 -6.6699 42 1 0.8298 -8.4466 -4.7020 43 1 0.9442 -8.6953 -6.4633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363849248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:20 Heat of formation + Delta-G solvation = -85.110074 kcal Electronic energy + Delta-G solvation = -28725.883608 eV Core-core repulsion = 24700.299341 eV Total energy + Delta-G solvation = -4025.584267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.32235 -40.80401 -39.16921 -38.58644 -38.28895 -36.06068 -35.44298 -32.62439 -32.17778 -31.56970 -31.03474 -29.42207 -27.71946 -26.75177 -25.70915 -24.10597 -22.92211 -22.46382 -21.98142 -21.23642 -20.03418 -19.57133 -18.45315 -18.38711 -17.74434 -17.02485 -16.54759 -16.33975 -16.20508 -16.04564 -15.81427 -15.64733 -15.59105 -15.42662 -15.32159 -15.02575 -14.44943 -14.40656 -14.03374 -13.89683 -13.69940 -13.44314 -12.91405 -12.84151 -12.74564 -12.70195 -12.50402 -12.17197 -12.05044 -12.01310 -11.95330 -11.48809 -11.41697 -10.96549 -10.44521 -10.02239 -9.64858 -9.59448 -9.49429 -9.12094 -9.10181 -6.46553 0.10829 0.28632 0.39393 0.89865 1.46732 1.62259 1.77208 2.02384 2.24626 2.27319 2.31449 2.37864 2.74240 2.81783 3.19420 3.51919 3.55664 3.83202 3.89318 3.93074 4.15534 4.19728 4.24430 4.26796 4.31936 4.41911 4.46731 4.54102 4.58875 4.66115 4.79887 4.85780 4.87811 5.10262 5.13109 5.23222 5.41692 5.44554 5.53572 5.64889 5.66149 5.70644 5.88110 5.90014 5.96058 6.19655 6.32608 6.35870 6.67523 6.84499 6.91734 7.58790 8.04147 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.003021 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.393442 B = 9265.735418 C = 9654.178750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C -0.002 4.002 3 Si 1.116 2.884 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.272 1.272 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.225 4.225 11 C -0.071 4.071 12 C -0.244 4.244 13 C -0.042 4.042 14 C -0.282 4.282 15 C 0.559 3.441 16 O -0.579 6.579 17 N -0.718 5.718 18 C 0.180 3.820 19 C -0.114 4.114 20 C -0.099 4.099 21 C -0.108 4.108 22 C -0.108 4.108 23 C 0.033 3.967 24 C 0.051 3.949 25 O -0.325 6.325 26 C 0.010 3.990 27 C 0.021 3.979 28 O -0.318 6.318 29 H 0.282 0.718 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.401 0.599 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.147 0.853 38 H 0.168 0.832 39 H 0.157 0.843 40 H 0.139 0.861 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -19.162 -9.123 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.218 4.218 3 Si 0.933 3.067 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.197 1.197 7 C -0.539 4.539 8 H 0.099 0.901 9 C 0.093 3.907 10 C -0.244 4.244 11 C -0.089 4.089 12 C -0.263 4.263 13 C -0.061 4.061 14 C -0.287 4.287 15 C 0.352 3.648 16 O -0.461 6.461 17 N -0.371 5.371 18 C 0.057 3.943 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.012 4.012 24 C 0.006 3.994 25 O -0.240 6.240 26 C -0.065 4.065 27 C -0.054 4.054 28 O -0.233 6.233 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.237 0.763 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.165 0.835 38 H 0.186 0.814 39 H 0.174 0.826 40 H 0.157 0.843 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.373 -16.791 -9.419 19.988 hybrid contribution -0.510 -1.667 -0.188 1.753 sum 4.863 -18.458 -9.607 21.369 Atomic orbital electron populations 1.70497 1.08603 1.33066 1.31947 1.28489 0.95844 1.07365 0.90062 0.83023 0.74796 0.70049 0.78806 1.18777 1.18241 1.19749 1.21129 1.01112 0.93596 1.38053 0.90078 1.17880 0.90403 0.92822 0.89547 1.21218 1.04089 0.97868 1.01220 1.21151 0.97273 0.92512 0.97996 1.20782 1.04390 0.97735 1.03353 1.21090 0.94088 0.95708 0.95170 1.19783 1.08286 0.95931 1.04682 1.18440 0.81850 0.82773 0.81744 1.90652 1.56687 1.34751 1.64032 1.45758 1.43124 1.08461 1.39760 1.19767 0.91813 0.92774 0.89916 1.19256 0.95988 0.95328 1.00915 1.21180 0.96180 0.94959 0.99439 1.21262 1.00013 0.94257 0.97003 1.20857 0.93147 1.01051 0.97635 1.19095 0.95004 0.90170 0.96947 1.18941 0.90695 0.90190 0.99609 1.86417 1.41654 1.50330 1.45592 1.23939 1.00115 0.95754 0.86662 1.23907 0.82878 0.92770 1.05845 1.86336 1.25496 1.51707 1.59717 0.90540 0.89081 0.85593 0.84648 0.85570 0.76266 0.93333 0.91219 0.83492 0.81427 0.82563 0.84328 0.90121 0.90335 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.44 12.57 21.88 0.28 -46.16 16 2 C 0.00 -0.13 5.04 85.37 0.43 0.30 16 3 Si 1.12 47.96 29.98 68.60 2.06 50.02 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.51 -30.24 7.66 23.42 0.18 -30.06 16 8 H 0.08 5.07 5.91 -2.91 -0.02 5.06 16 9 C 0.10 5.47 5.18 -21.11 -0.11 5.36 16 10 C -0.22 -11.58 7.86 22.72 0.18 -11.40 16 11 C -0.07 -3.04 10.01 22.26 0.22 -2.81 16 12 C -0.24 -9.54 10.03 22.41 0.22 -9.32 16 13 C -0.04 -1.73 9.53 22.50 0.21 -1.52 16 14 C -0.28 -14.23 5.92 -19.70 -0.12 -14.34 16 15 C 0.56 27.54 7.73 86.66 0.67 28.21 16 16 O -0.58 -33.15 13.55 -4.09 -0.06 -33.20 16 17 N -0.72 -27.29 5.50 -470.10 -2.58 -29.88 16 18 C 0.18 6.12 5.43 85.63 0.47 6.58 16 19 C -0.11 -3.05 5.26 -19.76 -0.10 -3.16 16 20 C -0.10 -2.04 9.66 22.26 0.22 -1.83 16 21 C -0.11 -1.72 10.04 22.26 0.22 -1.50 16 22 C -0.11 -1.94 9.96 22.37 0.22 -1.71 16 23 C 0.03 0.75 6.49 22.56 0.15 0.89 16 24 C 0.05 1.37 6.47 22.56 0.15 1.52 16 25 O -0.33 -9.17 9.61 -82.55 -0.79 -9.96 16 26 C 0.01 0.19 7.25 72.14 0.52 0.71 16 27 C 0.02 0.31 7.27 72.14 0.52 0.84 16 28 O -0.32 -6.54 10.43 -82.47 -0.86 -7.40 16 29 H 0.28 16.54 6.54 -92.71 -0.61 15.93 16 30 H 0.09 4.89 6.93 -2.91 -0.02 4.87 16 31 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 32 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.13 4.23 6.41 -2.91 -0.02 4.21 16 34 H 0.40 13.38 6.50 -92.71 -0.60 12.78 16 35 H 0.05 1.86 7.84 -2.39 -0.02 1.84 16 36 H 0.07 2.34 8.00 -2.39 -0.02 2.32 16 37 H 0.15 2.60 8.03 -2.91 -0.02 2.57 16 38 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -75.73 360.72 2.92 -72.81 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: 0.62 Total: 37.01 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 4.26 Total: -33.24 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -2.31 Total: -76.04 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -1.71 Total: -50.57 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.06 Total: 50.02 kcal Total: -75.73 2.92 -72.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363849248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.299 kcal (2) G-P(sol) polarization free energy of solvation -75.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds