Wall clock time and date at job start Tue Mar 31 2020 22:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86800 * 120.00160 * 2 1 4 4 H 1.48503 * 109.47339 * 239.99560 * 3 2 1 5 5 H 1.48497 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47477 * 119.99796 * 3 2 1 7 7 C 1.39949 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99983 * 197.86203 * 7 2 1 9 9 C 1.41395 * 119.99879 * 17.86672 * 7 2 1 10 10 C 1.40715 * 120.24240 * 204.38915 * 9 7 2 11 11 C 1.37621 * 119.74058 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.25055 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.75118 * 180.02562 * 12 11 10 14 14 S 1.81405 * 109.47350 * 89.99820 * 13 12 11 15 15 O 1.42103 * 110.53886 * 68.37786 * 14 13 12 16 16 O 1.42097 * 110.54037 * 291.62503 * 14 13 12 17 17 N 1.65593 * 104.44889 * 180.02562 * 14 13 12 18 18 C 1.46505 * 120.00012 * 65.00224 * 17 14 13 19 19 H 1.08999 * 110.01801 * 24.93724 * 18 17 14 20 20 C 1.53878 * 110.03217 * 263.54369 * 18 17 14 21 21 C 1.54269 * 106.59588 * 240.71386 * 20 18 17 22 22 C 1.54887 * 104.19639 * 23.61497 * 21 20 18 23 23 C 1.54271 * 110.03246 * 146.37648 * 18 17 14 24 24 H 1.08998 * 110.48606 * 214.35102 * 23 18 17 25 25 C 1.53000 * 110.48774 * 336.99494 * 23 18 17 26 26 O 1.42897 * 109.47342 * 184.99542 * 25 23 18 27 27 C 1.38637 * 120.50130 * 0.27503 * 12 11 10 28 28 C 1.37619 * 120.24652 * 359.44899 * 27 12 11 29 29 H 0.97005 * 119.99911 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.12847 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.87294 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.46881 * 329.99995 * 13 12 11 33 33 H 1.08998 * 109.47243 * 210.00349 * 13 12 11 34 34 H 0.97004 * 120.00250 * 244.99976 * 17 14 13 35 35 H 1.08997 * 110.03102 * 0.02562 * 20 18 17 36 36 H 1.08998 * 110.03112 * 121.43205 * 20 18 17 37 37 H 1.09001 * 110.48230 * 142.28531 * 21 20 18 38 38 H 1.09001 * 110.48661 * 264.79724 * 21 20 18 39 39 H 1.08991 * 110.76313 * 80.37225 * 22 21 20 40 40 H 1.09003 * 110.75360 * 203.74487 * 22 21 20 41 41 H 1.08996 * 109.47485 * 305.00407 * 25 23 18 42 42 H 1.09008 * 109.46902 * 64.99573 * 25 23 18 43 43 H 0.96697 * 114.00107 * 179.97438 * 26 25 23 44 44 H 1.07999 * 119.87805 * 179.70578 * 27 12 11 45 45 H 1.08001 * 120.12898 * 180.27649 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3521 -2.4071 -0.3746 10 6 1.8257 -3.6498 0.0852 11 6 1.1791 -4.8066 -0.2859 12 6 0.0656 -4.7508 -1.1099 13 6 -0.6341 -6.0244 -1.5088 14 16 -1.9255 -6.4108 -0.2948 15 8 -2.9785 -5.4593 -0.3671 16 8 -1.3463 -6.7692 0.9523 17 7 -2.6053 -7.8159 -0.8476 18 6 -1.8098 -9.0452 -0.8953 19 1 -1.0017 -8.9954 -0.1655 20 6 -1.2328 -9.2452 -2.3077 21 6 -1.7997 -10.5814 -2.8302 22 6 -3.0997 -10.7876 -2.0139 23 6 -2.7073 -10.2669 -0.6089 24 1 -2.1518 -11.0283 -0.0613 25 6 -3.9528 -9.8448 0.1730 26 8 -4.7088 -11.0046 0.5270 27 6 -0.4060 -3.5325 -1.5739 28 6 0.2214 -2.3626 -1.2110 29 1 -0.4850 0.8401 -0.0004 30 1 2.6926 -3.6956 0.7275 31 1 1.5405 -5.7615 0.0661 32 1 0.0880 -6.8402 -1.5432 33 1 -1.0863 -5.8978 -2.4925 34 1 -3.5302 -7.8251 -1.1398 35 1 -1.5442 -8.4274 -2.9575 36 1 -0.1447 -9.2932 -2.2632 37 1 -2.0249 -10.5101 -3.8943 38 1 -1.0967 -11.3932 -2.6435 39 1 -3.9155 -10.1971 -2.4307 40 1 -3.3672 -11.8435 -1.9736 41 1 -3.6522 -9.3167 1.0779 42 1 -4.5642 -9.1872 -0.4451 43 1 -5.5142 -10.8118 1.0262 44 1 -1.2714 -3.5010 -2.2192 45 1 -0.1503 -1.4142 -1.5700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364864236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:36 Heat of formation + Delta-G solvation = -121.406613 kcal Electronic energy + Delta-G solvation = -27465.063915 eV Core-core repulsion = 23573.349664 eV Total energy + Delta-G solvation = -3891.714252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.44943 -37.79034 -36.64725 -36.44854 -35.45307 -34.18082 -33.34906 -31.54321 -30.29977 -29.44752 -27.85014 -27.48677 -24.58964 -24.24440 -21.18428 -20.89837 -20.44279 -20.05543 -19.20424 -17.91379 -17.44755 -17.19672 -16.23448 -15.88475 -15.53929 -15.45784 -15.13182 -14.83854 -14.47431 -14.39744 -13.92079 -13.82472 -13.62013 -12.98953 -12.67246 -12.33082 -12.17691 -12.13795 -12.08510 -11.90652 -11.60802 -11.56130 -11.38255 -11.35702 -11.21579 -11.15513 -11.06421 -11.01297 -10.94012 -10.82953 -10.63827 -10.32773 -10.10591 -9.84372 -9.55133 -9.48929 -9.20902 -7.62454 -7.46005 -6.92098 -4.50180 0.62095 2.63466 2.94786 2.99790 3.01549 3.05344 3.10869 3.81714 3.84537 4.17705 4.27896 4.36739 4.47661 4.55830 4.72574 4.96479 5.06507 5.14545 5.22055 5.23207 5.26322 5.34475 5.40363 5.43703 5.53269 5.55125 5.63542 5.72748 5.81834 5.93544 6.04421 6.11759 6.18493 6.19214 6.25153 6.82693 6.91296 6.98846 7.09202 7.17896 7.38133 7.44965 7.65848 7.88939 7.89601 8.12138 8.46961 8.71536 8.79536 10.01283 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.002529 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.333332 B =11069.380019 C =11433.548441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.449 4.449 8 H 0.083 0.917 9 C 0.117 3.883 10 C -0.226 4.226 11 C -0.067 4.067 12 C -0.238 4.238 13 C -0.518 4.518 14 S 2.573 3.427 15 O -0.963 6.963 16 O -0.963 6.963 17 N -1.125 6.125 18 C 0.150 3.850 19 H 0.099 0.901 20 C -0.150 4.150 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.093 4.093 24 H 0.093 0.907 25 C 0.083 3.917 26 O -0.576 6.576 27 C -0.081 4.081 28 C -0.167 4.167 29 H 0.286 0.714 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.410 0.590 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.379 0.621 44 H 0.094 0.906 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 -16.547 -5.111 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.478 4.478 8 H 0.101 0.899 9 C 0.114 3.886 10 C -0.246 4.246 11 C -0.087 4.087 12 C -0.244 4.244 13 C -0.649 4.649 14 S 2.673 3.327 15 O -0.953 6.953 16 O -0.953 6.953 17 N -0.882 5.882 18 C 0.042 3.958 19 H 0.117 0.883 20 C -0.190 4.190 21 C -0.161 4.161 22 C -0.152 4.152 23 C -0.113 4.113 24 H 0.111 0.889 25 C 0.005 3.995 26 O -0.381 6.381 27 C -0.101 4.101 28 C -0.187 4.187 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.244 0.756 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.226 0.774 44 H 0.113 0.887 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.529 -16.300 -4.541 17.801 hybrid contribution -0.240 0.917 -0.373 1.019 sum -5.770 -15.383 -4.914 17.149 Atomic orbital electron populations 1.69817 1.07737 1.29955 1.32759 1.26027 0.94805 1.01723 0.92141 0.86279 0.80135 0.79727 0.80155 1.18638 1.20142 1.18786 1.19710 0.98313 0.91190 1.38572 0.89931 1.17731 0.90808 0.92178 0.87879 1.20974 1.04091 0.92577 1.06943 1.20455 0.94568 0.97172 0.96507 1.18099 1.03252 0.90420 1.12590 1.28959 1.15231 1.05644 1.15035 1.06746 0.76364 0.72509 0.77113 1.93550 1.53947 1.60334 1.87487 1.93527 1.79722 1.82090 1.39967 1.56166 1.23244 1.24413 1.84364 1.21421 0.93349 0.83761 0.97276 0.88342 1.22863 1.01038 0.98818 0.96233 1.22336 0.97055 0.97038 0.99666 1.22522 0.97390 1.01400 0.93865 1.22157 0.95327 0.97151 0.96691 0.88902 1.22158 0.92140 0.86918 0.98243 1.86431 1.40472 1.33477 1.77721 1.20607 0.98138 0.92452 0.98856 1.21321 0.99392 0.96765 1.01184 0.90300 0.88333 0.88701 0.86239 0.86034 0.75565 0.90287 0.90578 0.91436 0.91365 0.91444 0.91093 0.92912 0.93493 0.77432 0.88746 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.71 10.95 55.55 0.61 -19.10 16 2 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.52 9.05 -37.74 -0.34 -11.86 16 8 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 9 C 0.12 3.07 5.57 -106.83 -0.60 2.48 16 10 C -0.23 -5.47 9.80 -38.87 -0.38 -5.85 16 11 C -0.07 -1.50 9.67 -39.66 -0.38 -1.88 16 12 C -0.24 -5.09 5.16 -104.33 -0.54 -5.63 16 13 C -0.52 -8.23 6.04 36.00 0.22 -8.01 16 14 S 2.57 43.23 5.42 -107.50 -0.58 42.64 16 15 O -0.96 -19.66 18.08 -57.54 -1.04 -20.70 16 16 O -0.96 -19.20 17.41 -57.54 -1.00 -20.20 16 17 N -1.13 -13.09 4.48 -3.93 -0.02 -13.11 16 18 C 0.15 1.51 3.34 -66.80 -0.22 1.29 16 19 H 0.10 1.04 7.52 -51.93 -0.39 0.65 16 20 C -0.15 -1.25 6.22 -25.61 -0.16 -1.41 16 21 C -0.12 -0.90 6.83 -25.07 -0.17 -1.07 16 22 C -0.11 -0.92 6.25 -24.74 -0.15 -1.08 16 23 C -0.09 -0.87 3.09 -88.96 -0.27 -1.14 16 24 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 25 C 0.08 0.81 5.55 37.16 0.21 1.02 16 26 O -0.58 -5.43 13.57 -35.23 -0.48 -5.91 16 27 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 28 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 29 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 30 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 32 H 0.12 1.55 7.85 -51.92 -0.41 1.14 16 33 H 0.12 1.63 8.08 -51.93 -0.42 1.21 16 34 H 0.41 4.09 7.08 -34.47 -0.24 3.85 16 35 H 0.08 0.65 7.92 -51.93 -0.41 0.24 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.54 7.96 -51.93 -0.41 0.12 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.41 6.53 -51.92 -0.34 0.07 16 43 H 0.38 2.03 9.12 45.56 0.42 2.45 16 44 H 0.09 1.98 8.06 -52.49 -0.42 1.55 16 45 H 0.12 3.19 6.16 -52.49 -0.32 2.87 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -32.94 378.35 -11.34 -44.28 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.89 Total: 11.81 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: -3.61 Total: -38.35 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.59 Total: -32.21 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -2.52 Total: -46.81 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 43.23 SS G_CDS: -0.58 Total: 42.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.94 -11.34 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364864236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.125 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds