Wall clock time and date at job start Tue Mar 31 2020 22:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86800 * 120.00160 * 2 1 4 4 H 1.48503 * 109.47339 * 239.99560 * 3 2 1 5 5 H 1.48497 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47477 * 119.99796 * 3 2 1 7 7 C 1.39949 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99983 * 197.86203 * 7 2 1 9 9 C 1.41395 * 119.99879 * 17.86672 * 7 2 1 10 10 C 1.40715 * 120.24240 * 204.38915 * 9 7 2 11 11 C 1.37621 * 119.74058 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.25055 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.75118 * 180.02562 * 12 11 10 14 14 S 1.81405 * 109.47350 * 89.99820 * 13 12 11 15 15 O 1.42103 * 110.53886 * 68.37786 * 14 13 12 16 16 O 1.42097 * 110.54037 * 291.62503 * 14 13 12 17 17 N 1.65593 * 104.44889 * 180.02562 * 14 13 12 18 18 C 1.46505 * 120.00012 * 65.00224 * 17 14 13 19 19 H 1.08999 * 110.01801 * 24.93724 * 18 17 14 20 20 C 1.53878 * 110.03217 * 263.54369 * 18 17 14 21 21 C 1.54269 * 106.59588 * 240.71386 * 20 18 17 22 22 C 1.54887 * 104.19639 * 23.61497 * 21 20 18 23 23 C 1.54271 * 110.03246 * 146.37648 * 18 17 14 24 24 H 1.08998 * 110.48606 * 214.35102 * 23 18 17 25 25 C 1.53000 * 110.48774 * 336.99494 * 23 18 17 26 26 O 1.42897 * 109.47342 * 184.99542 * 25 23 18 27 27 C 1.38637 * 120.50130 * 0.27503 * 12 11 10 28 28 C 1.37619 * 120.24652 * 359.44899 * 27 12 11 29 29 H 0.97005 * 119.99911 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.12847 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.87294 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.46881 * 329.99995 * 13 12 11 33 33 H 1.08998 * 109.47243 * 210.00349 * 13 12 11 34 34 H 0.97004 * 120.00250 * 244.99976 * 17 14 13 35 35 H 1.08997 * 110.03102 * 0.02562 * 20 18 17 36 36 H 1.08998 * 110.03112 * 121.43205 * 20 18 17 37 37 H 1.09001 * 110.48230 * 142.28531 * 21 20 18 38 38 H 1.09001 * 110.48661 * 264.79724 * 21 20 18 39 39 H 1.08991 * 110.76313 * 80.37225 * 22 21 20 40 40 H 1.09003 * 110.75360 * 203.74487 * 22 21 20 41 41 H 1.08996 * 109.47485 * 305.00407 * 25 23 18 42 42 H 1.09008 * 109.46902 * 64.99573 * 25 23 18 43 43 H 0.96697 * 114.00107 * 179.97438 * 26 25 23 44 44 H 1.07999 * 119.87805 * 179.70578 * 27 12 11 45 45 H 1.08001 * 120.12898 * 180.27649 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3521 -2.4071 -0.3746 10 6 1.8257 -3.6498 0.0852 11 6 1.1791 -4.8066 -0.2859 12 6 0.0656 -4.7508 -1.1099 13 6 -0.6341 -6.0244 -1.5088 14 16 -1.9255 -6.4108 -0.2948 15 8 -2.9785 -5.4593 -0.3671 16 8 -1.3463 -6.7692 0.9523 17 7 -2.6053 -7.8159 -0.8476 18 6 -1.8098 -9.0452 -0.8953 19 1 -1.0017 -8.9954 -0.1655 20 6 -1.2328 -9.2452 -2.3077 21 6 -1.7997 -10.5814 -2.8302 22 6 -3.0997 -10.7876 -2.0139 23 6 -2.7073 -10.2669 -0.6089 24 1 -2.1518 -11.0283 -0.0613 25 6 -3.9528 -9.8448 0.1730 26 8 -4.7088 -11.0046 0.5270 27 6 -0.4060 -3.5325 -1.5739 28 6 0.2214 -2.3626 -1.2110 29 1 -0.4850 0.8401 -0.0004 30 1 2.6926 -3.6956 0.7275 31 1 1.5405 -5.7615 0.0661 32 1 0.0880 -6.8402 -1.5432 33 1 -1.0863 -5.8978 -2.4925 34 1 -3.5302 -7.8251 -1.1398 35 1 -1.5442 -8.4274 -2.9575 36 1 -0.1447 -9.2932 -2.2632 37 1 -2.0249 -10.5101 -3.8943 38 1 -1.0967 -11.3932 -2.6435 39 1 -3.9155 -10.1971 -2.4307 40 1 -3.3672 -11.8435 -1.9736 41 1 -3.6522 -9.3167 1.0779 42 1 -4.5642 -9.1872 -0.4451 43 1 -5.5142 -10.8118 1.0262 44 1 -1.2714 -3.5010 -2.2192 45 1 -0.1503 -1.4142 -1.5700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364864236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:35 Heat of formation + Delta-G solvation = -145.498502 kcal Electronic energy + Delta-G solvation = -27466.108618 eV Core-core repulsion = 23573.349664 eV Total energy + Delta-G solvation = -3892.758954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.18874 -39.58443 -38.09608 -37.20883 -36.94087 -35.95592 -34.23390 -33.22892 -31.28502 -31.00471 -29.51341 -28.25243 -25.98219 -25.30077 -23.02017 -22.19567 -21.45864 -20.98861 -20.34135 -19.30101 -19.01378 -18.16126 -17.45006 -17.16418 -17.10714 -16.41656 -16.18107 -15.99853 -15.67603 -15.57100 -15.53724 -15.25334 -14.38060 -14.29210 -13.91327 -13.79000 -13.70340 -13.55682 -13.24706 -13.15995 -13.07010 -13.03788 -12.96687 -12.77204 -12.72693 -12.23460 -12.04624 -11.99419 -11.87489 -11.84571 -11.63332 -11.54849 -11.39966 -11.34987 -11.03386 -10.83436 -10.44370 -9.47289 -9.27966 -8.71603 -6.41162 -0.73826 0.88604 1.06636 1.37375 1.49050 1.52602 1.87027 2.17627 2.62675 2.88509 3.16468 3.25576 3.62341 3.65055 3.68792 3.79245 4.02971 4.08162 4.29010 4.31916 4.42365 4.43988 4.51435 4.54610 4.60937 4.66599 4.71032 4.77761 4.79344 4.95850 4.99522 5.08253 5.13918 5.25552 5.26656 5.33412 5.34374 5.43785 5.54597 5.60936 5.83677 6.01830 6.03990 6.09594 6.28199 6.60340 6.84561 6.84674 6.92901 8.24958 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.002529 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.333332 B =11069.380019 C =11433.548441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.032 3.968 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.490 4.490 8 H 0.083 0.917 9 C 0.084 3.916 10 C -0.246 4.246 11 C -0.076 4.076 12 C -0.232 4.232 13 C -0.519 4.519 14 S 2.594 3.406 15 O -1.003 7.003 16 O -0.997 6.997 17 N -1.106 6.106 18 C 0.142 3.858 19 H 0.094 0.906 20 C -0.152 4.152 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.094 4.094 24 H 0.092 0.908 25 C 0.080 3.920 26 O -0.587 6.587 27 C -0.092 4.092 28 C -0.195 4.195 29 H 0.292 0.708 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.421 0.579 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.057 0.943 43 H 0.395 0.605 44 H 0.114 0.886 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 -18.569 -6.445 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.519 4.519 8 H 0.101 0.899 9 C 0.082 3.918 10 C -0.265 4.265 11 C -0.095 4.095 12 C -0.236 4.236 13 C -0.651 4.651 14 S 2.694 3.306 15 O -0.993 6.993 16 O -0.987 6.987 17 N -0.867 5.867 18 C 0.035 3.965 19 H 0.112 0.888 20 C -0.191 4.191 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.115 4.115 24 H 0.110 0.890 25 C 0.002 3.998 26 O -0.395 6.395 27 C -0.112 4.112 28 C -0.215 4.215 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.176 0.824 33 H 0.173 0.827 34 H 0.258 0.742 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.244 0.756 44 H 0.132 0.868 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.626 -18.311 -5.865 20.034 hybrid contribution -0.348 1.217 0.022 1.266 sum -5.974 -17.094 -5.842 19.027 Atomic orbital electron populations 1.69877 1.09270 1.31130 1.34091 1.26901 0.95501 1.04956 0.91025 0.85169 0.78722 0.75086 0.80265 1.18140 1.19176 1.18195 1.19957 0.98676 0.92350 1.40887 0.89878 1.18091 0.91640 0.93351 0.88766 1.21228 1.04852 0.92945 1.07499 1.20872 0.94605 0.97813 0.96210 1.18532 1.02543 0.92020 1.10516 1.29021 1.15655 1.04087 1.16290 1.05549 0.75786 0.72727 0.76572 1.93506 1.55369 1.62467 1.87961 1.93495 1.80371 1.82759 1.42067 1.55619 1.23780 1.23271 1.84008 1.21680 0.93234 0.82851 0.98713 0.88806 1.22910 1.01819 0.99649 0.94764 1.22327 0.96573 0.96701 1.00031 1.22501 0.97983 1.01344 0.93017 1.22178 0.95009 0.96725 0.97546 0.88970 1.22170 0.92689 0.87148 0.97803 1.86392 1.41468 1.33528 1.78123 1.20939 0.98527 0.92595 0.99104 1.21337 1.00406 0.97218 1.02489 0.89734 0.87659 0.85565 0.82445 0.82700 0.74189 0.89611 0.89307 0.90413 0.90646 0.91200 0.91120 0.94536 0.92526 0.75561 0.86821 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.22 10.95 21.83 0.24 -42.98 16 2 C 0.03 1.62 5.14 85.26 0.44 2.06 16 3 Si 0.99 37.65 29.59 68.60 2.03 39.68 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 7 C -0.49 -26.28 9.05 23.46 0.21 -26.07 16 8 H 0.08 4.23 7.91 -2.91 -0.02 4.21 16 9 C 0.08 4.60 5.57 -21.29 -0.12 4.48 16 10 C -0.25 -12.11 9.80 22.73 0.22 -11.89 16 11 C -0.08 -3.28 9.67 22.22 0.21 -3.07 16 12 C -0.23 -9.55 5.16 -19.68 -0.10 -9.65 16 13 C -0.52 -14.70 6.04 71.24 0.43 -14.27 16 14 S 2.59 82.02 5.42 -56.49 -0.31 81.71 16 15 O -1.00 -39.91 18.08 -127.65 -2.31 -42.22 16 16 O -1.00 -38.45 17.41 -127.65 -2.22 -40.67 16 17 N -1.11 -22.79 4.48 -166.35 -0.75 -23.54 16 18 C 0.14 2.44 3.34 45.72 0.15 2.59 16 19 H 0.09 1.74 7.52 -2.39 -0.02 1.72 16 20 C -0.15 -1.92 6.22 31.32 0.19 -1.73 16 21 C -0.12 -1.29 6.83 31.67 0.22 -1.08 16 22 C -0.11 -1.46 6.25 31.89 0.20 -1.26 16 23 C -0.09 -1.54 3.09 -9.72 -0.03 -1.57 16 24 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 25 C 0.08 1.42 5.55 71.98 0.40 1.82 16 26 O -0.59 -10.06 13.57 -148.98 -2.02 -12.09 16 27 C -0.09 -4.28 9.67 22.22 0.21 -4.07 16 28 C -0.19 -10.38 8.70 22.73 0.20 -10.18 16 29 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 30 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 32 H 0.16 3.32 7.85 -2.39 -0.02 3.30 16 33 H 0.16 3.44 8.08 -2.39 -0.02 3.42 16 34 H 0.42 7.28 7.08 -96.74 -0.68 6.59 16 35 H 0.09 1.00 7.92 -2.39 -0.02 0.98 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.89 7.96 -2.39 -0.02 0.87 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.87 6.53 -2.38 -0.02 0.85 16 43 H 0.39 3.62 9.12 -74.06 -0.68 2.94 16 44 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 45 H 0.11 5.86 6.16 -2.91 -0.02 5.84 16 Total: -1.00 -74.27 378.35 -2.84 -77.11 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: -0.35 Total: 36.85 kcal Atomic # 6 Polarization: -76.70 SS G_CDS: 2.84 Total: -73.86 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -0.51 Total: -66.51 kcal Atomic # 8 Polarization: -88.43 SS G_CDS: -6.55 Total: -94.98 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Atomic # 16 Polarization: 82.02 SS G_CDS: -0.31 Total: 81.71 kcal Total: -74.27 -2.84 -77.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364864236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.390 kcal (2) G-P(sol) polarization free energy of solvation -74.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds