Wall clock time and date at job start Tue Mar 31 2020 22:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53780 * 113.61726 * 2 1 4 4 C 1.53780 * 87.08170 * 219.93581 * 3 2 1 5 5 C 1.53001 * 113.61464 * 139.98570 * 4 3 2 6 6 S 1.81394 * 109.47072 * 176.52809 * 5 4 3 7 7 O 1.42098 * 110.54489 * 291.61970 * 6 5 4 8 8 O 1.42103 * 110.54675 * 68.37208 * 6 5 4 9 9 N 1.65604 * 104.44839 * 179.97438 * 6 5 4 10 10 C 1.46497 * 119.99642 * 65.00265 * 9 6 5 11 11 C 1.50705 * 109.46963 * 165.00242 * 10 9 6 12 12 C 1.38326 * 119.96146 * 269.72060 * 11 10 9 13 13 C 1.38273 * 120.13606 * 179.76789 * 12 11 10 14 14 C 1.38121 * 120.06966 * 0.50888 * 13 12 11 15 15 C 1.38856 * 119.93100 * 359.74489 * 14 13 12 16 16 O 1.35755 * 120.07037 * 179.97438 * 15 14 13 17 17 C 1.34833 * 116.99676 * 354.49091 * 16 15 14 18 18 H 1.08001 * 120.00209 * 5.05404 * 17 16 15 19 19 C 1.38656 * 119.99736 * 185.06321 * 17 16 15 20 20 N 1.31561 * 119.99818 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00154 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47016 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47170 * 119.99334 * 21 19 17 24 24 H 1.48504 * 109.46705 * 239.99731 * 21 19 17 25 25 C 1.38075 * 119.96781 * 89.99749 * 11 10 9 26 26 C 1.53779 * 87.17461 * 25.38734 * 4 3 2 27 27 H 1.09004 * 109.47085 * 59.99936 * 1 2 3 28 28 H 1.08999 * 109.47479 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47423 * 299.99689 * 1 2 3 30 30 H 1.09002 * 112.84783 * 131.19901 * 2 1 3 31 31 H 1.09007 * 113.60921 * 105.38437 * 3 2 1 32 32 H 1.08998 * 113.61144 * 334.48456 * 3 2 1 33 33 H 1.09008 * 113.61326 * 270.79853 * 4 3 2 34 34 H 1.08990 * 109.47187 * 56.52441 * 5 4 3 35 35 H 1.09000 * 109.46478 * 296.52689 * 5 4 3 36 36 H 0.96999 * 119.99988 * 244.99972 * 9 6 5 37 37 H 1.09003 * 109.47125 * 284.99311 * 10 9 6 38 38 H 1.08999 * 109.47475 * 44.99676 * 10 9 6 39 39 H 1.08006 * 119.93030 * 359.97438 * 12 11 10 40 40 H 1.08007 * 119.96551 * 180.25300 * 13 12 11 41 41 H 1.08005 * 120.03280 * 179.72413 * 14 13 12 42 42 H 0.96997 * 119.99474 * 180.02562 * 20 19 17 43 43 H 1.07998 * 120.03676 * 359.95524 * 25 11 10 44 44 H 1.09005 * 113.60814 * 89.15851 * 26 4 3 45 45 H 1.08994 * 113.61597 * 220.05861 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 3.1937 0.8655 -0.9859 5 6 3.5490 1.8464 -2.1050 6 16 4.8610 1.1365 -3.1372 7 8 6.0804 1.0610 -2.4116 8 8 4.3722 0.0193 -3.8667 9 7 5.1443 2.2869 -4.2943 10 6 5.6868 3.5927 -3.9115 11 6 6.1921 4.3062 -5.1390 12 6 7.5054 4.1431 -5.5414 13 6 7.9715 4.7922 -6.6698 14 6 7.1293 5.6141 -7.3929 15 6 5.8118 5.7841 -6.9885 16 8 4.9817 6.5917 -7.6968 17 6 5.5268 7.2883 -8.7145 18 1 6.5597 7.1283 -8.9863 19 6 4.7612 8.2102 -9.4120 20 7 3.5028 8.4049 -9.0810 21 14 5.5160 9.1748 -10.8224 22 1 6.9355 8.7733 -10.9928 23 1 4.7673 8.8908 -12.0729 24 1 5.4454 10.6275 -10.5221 25 6 5.3452 5.1266 -5.8575 26 6 2.1499 -0.1864 -1.3968 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.9532 -0.6616 0.7558 31 1 2.5637 1.7028 0.9630 32 1 1.4951 2.1701 -0.4302 33 1 4.0725 0.4418 -0.4996 34 1 3.8959 2.7836 -1.6701 35 1 2.6668 2.0343 -2.7170 36 1 4.9511 2.0960 -5.2255 37 1 4.9037 4.1880 -3.4419 38 1 6.5080 3.4531 -3.2084 39 1 8.1673 3.5047 -4.9749 40 1 8.9964 4.6596 -6.9838 41 1 7.4952 6.1244 -8.2717 42 1 2.9672 9.0495 -9.5692 43 1 4.3209 5.2565 -5.5407 44 1 1.5000 0.1378 -2.2097 45 1 2.5707 -1.1785 -1.5600 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365031797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:26 Heat of formation + Delta-G solvation = -89.928924 kcal Electronic energy + Delta-G solvation = -26379.138902 eV Core-core repulsion = 22488.789626 eV Total energy + Delta-G solvation = -3890.349277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.81788 -40.18506 -38.64973 -38.11790 -37.00172 -35.97885 -34.27088 -32.58911 -31.86441 -30.64180 -28.64308 -27.48949 -26.60870 -26.39497 -23.24627 -22.60208 -22.43721 -20.44094 -20.26850 -19.64603 -18.96196 -18.41500 -17.56479 -17.17334 -16.75738 -16.53237 -16.38820 -16.09980 -15.77334 -15.46655 -15.28982 -15.08923 -14.85749 -14.37635 -14.24608 -14.15004 -13.86292 -13.51138 -13.47279 -13.34755 -13.30966 -13.18436 -13.06937 -12.94951 -12.61228 -12.49195 -12.46593 -12.26239 -12.24360 -12.07927 -11.67945 -11.56556 -11.20539 -11.06741 -11.00746 -10.81374 -10.35147 -9.73447 -9.01321 -8.47063 -6.14738 -0.72181 0.46143 0.72468 1.35952 1.43221 1.53402 1.83239 2.17428 2.79509 2.85552 3.16031 3.21791 3.42072 3.46105 3.55012 3.68339 3.78754 3.82398 4.08033 4.11410 4.23480 4.32683 4.41509 4.46868 4.49695 4.57587 4.61761 4.74616 4.77586 4.85865 4.88373 4.91761 4.93920 4.99238 5.05051 5.13386 5.16912 5.25245 5.29966 5.42118 5.60824 5.63562 5.72419 5.75107 6.00073 6.03353 6.19597 6.98455 7.78439 8.76094 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.002221 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.517970 B =12604.982140 C =13766.708995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.116 4.116 4 C -0.118 4.118 5 C -0.600 4.600 6 S 2.617 3.383 7 O -0.991 6.991 8 O -0.992 6.992 9 N -1.116 6.116 10 C 0.159 3.841 11 C -0.053 4.053 12 C -0.178 4.178 13 C -0.075 4.075 14 C -0.239 4.239 15 C 0.110 3.890 16 O -0.230 6.230 17 C -0.411 4.411 18 H 0.101 0.899 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.016 2.984 22 H -0.253 1.253 23 H -0.270 1.270 24 H -0.269 1.269 25 C -0.179 4.179 26 C -0.152 4.152 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.420 0.580 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.117 0.883 42 H 0.272 0.728 43 H 0.122 0.878 44 H 0.091 0.909 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -13.439 18.036 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.154 4.154 4 C -0.138 4.138 5 C -0.732 4.732 6 S 2.714 3.286 7 O -0.981 6.981 8 O -0.982 6.982 9 N -0.875 5.875 10 C 0.034 3.966 11 C -0.055 4.055 12 C -0.197 4.197 13 C -0.093 4.093 14 C -0.258 4.258 15 C 0.060 3.940 16 O -0.136 6.136 17 C -0.487 4.487 18 H 0.118 0.882 19 C -0.220 4.220 20 N -0.558 5.558 21 Si 0.836 3.164 22 H -0.176 1.176 23 H -0.195 1.195 24 H -0.194 1.194 25 C -0.199 4.199 26 C -0.190 4.190 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.179 0.821 35 H 0.171 0.829 36 H 0.254 0.746 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.140 0.860 44 H 0.109 0.891 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.757 -14.078 18.248 23.059 hybrid contribution -0.311 1.060 -1.386 1.772 sum -1.067 -13.018 16.862 21.329 Atomic orbital electron populations 1.21732 0.94152 1.02050 1.02151 1.22517 0.96275 0.97709 0.96873 1.23015 0.96388 0.97022 0.98993 1.22400 0.99267 0.96147 0.95965 1.30443 1.18733 1.12041 1.12023 1.04614 0.76219 0.73367 0.74383 1.93546 1.43618 1.86345 1.74580 1.93555 1.83002 1.50576 1.71079 1.55517 1.80826 1.28366 1.22784 1.20330 0.99861 0.82413 0.93975 1.19520 0.93529 0.96098 0.96334 1.21059 0.95825 1.03837 0.99016 1.21133 0.99507 0.94336 0.94284 1.21348 0.94364 1.06098 1.04035 1.19920 0.90513 0.91562 0.92042 1.83940 1.35853 1.51839 1.42014 1.21823 0.98379 1.19635 1.08900 0.88207 1.26530 0.95971 0.97700 1.01774 1.70178 1.08408 1.35157 1.42008 0.84554 0.78632 0.77429 0.75776 1.17600 1.19473 1.19374 1.20306 1.00946 1.02887 0.95754 1.23411 0.98009 0.99042 0.98492 0.92649 0.92424 0.91781 0.88493 0.89967 0.88860 0.87777 0.82129 0.82928 0.74574 0.88388 0.88124 0.84028 0.83955 0.86483 0.91872 0.85988 0.89086 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.71 71.98 0.70 -0.78 16 2 C -0.12 -1.30 4.35 -10.21 -0.04 -1.34 16 3 C -0.12 -1.21 7.21 31.12 0.22 -0.99 16 4 C -0.12 -1.56 3.64 -10.27 -0.04 -1.59 16 5 C -0.60 -7.50 5.90 71.98 0.42 -7.08 16 6 S 2.62 53.66 5.46 -56.49 -0.31 53.35 16 7 O -0.99 -26.10 17.50 -127.65 -2.23 -28.34 16 8 O -0.99 -27.12 18.08 -127.65 -2.31 -29.43 16 9 N -1.12 -23.58 5.88 -190.79 -1.12 -24.70 16 10 C 0.16 3.40 6.26 85.64 0.54 3.94 16 11 C -0.05 -1.60 5.27 -19.88 -0.10 -1.71 16 12 C -0.18 -5.31 9.70 22.30 0.22 -5.09 16 13 C -0.07 -2.47 10.04 22.25 0.22 -2.24 16 14 C -0.24 -10.02 9.17 22.39 0.21 -9.82 16 15 C 0.11 5.20 6.65 22.58 0.15 5.35 16 16 O -0.23 -13.33 9.76 -22.82 -0.22 -13.55 16 17 C -0.41 -23.38 9.49 67.92 0.64 -22.74 16 18 H 0.10 5.24 5.20 -2.91 -0.02 5.22 16 19 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 20 N -0.92 -55.25 13.67 21.61 0.30 -54.96 16 21 Si 1.02 42.17 29.55 68.60 2.03 44.20 16 22 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 25 C -0.18 -6.90 9.65 22.39 0.22 -6.68 16 26 C -0.15 -2.17 7.20 31.18 0.22 -1.94 16 27 H 0.05 0.59 7.96 -2.38 -0.02 0.57 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.09 0.90 8.06 -2.39 -0.02 0.88 16 33 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.16 1.26 8.14 -2.40 -0.02 1.24 16 35 H 0.15 1.50 7.87 -2.39 -0.02 1.48 16 36 H 0.42 9.39 8.61 -96.74 -0.83 8.55 16 37 H 0.10 1.56 8.08 -2.39 -0.02 1.54 16 38 H 0.10 1.89 7.64 -2.39 -0.02 1.87 16 39 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 41 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 42 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 44 H 0.09 1.27 7.75 -2.38 -0.02 1.25 16 45 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -77.76 387.22 0.34 -77.42 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.17 Total: 29.49 kcal Atomic # 6 Polarization: -57.53 SS G_CDS: 4.04 Total: -53.49 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -0.83 Total: -79.65 kcal Atomic # 8 Polarization: -66.56 SS G_CDS: -4.76 Total: -71.32 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 53.66 SS G_CDS: -0.31 Total: 53.35 kcal Total: -77.76 0.34 -77.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365031797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.504 kcal (2) G-P(sol) polarization free energy of solvation -77.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds