Wall clock time and date at job start Tue Mar 31 2020 22:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31546 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48504 * 109.47154 * 239.99811 * 3 2 1 5 5 H 1.48492 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47064 * 119.99898 * 3 2 1 7 7 C 1.38657 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00199 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.35752 * 117.00272 * 185.05513 * 9 7 2 11 11 C 1.38888 * 120.06488 * 354.46494 * 10 9 7 12 12 C 1.38096 * 119.92811 * 180.02562 * 11 10 9 13 13 C 1.38307 * 120.07139 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.93231 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.46990 * 89.99812 * 14 13 12 16 16 C 1.34776 * 120.00026 * 180.02562 * 15 14 13 17 17 O 1.21595 * 119.99729 * 359.97438 * 16 15 14 18 18 C 1.47524 * 120.00221 * 179.97438 * 16 15 14 19 19 C 1.39533 * 120.05492 * 359.97438 * 18 16 15 20 20 C 1.37785 * 120.18333 * 179.97438 * 19 18 16 21 21 C 1.38646 * 119.98091 * 0.21474 * 20 19 18 22 22 C 1.37657 * 120.31726 * 359.97438 * 21 20 19 23 23 C 1.38879 * 120.87315 * 359.59206 * 22 21 20 24 24 O 1.35855 * 111.30286 * 181.06816 * 23 22 21 25 25 C 1.43782 * 109.23118 * 340.64683 * 24 23 22 26 26 C 1.51676 * 132.13321 * 179.10099 * 22 21 20 27 27 C 1.38307 * 120.13492 * 0.25077 * 13 12 11 28 28 C 1.38100 * 120.06819 * 359.45788 * 27 13 12 29 29 H 0.96998 * 119.99970 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.03311 * 359.97438 * 11 10 9 31 31 H 1.08004 * 119.96492 * 179.97438 * 12 11 10 32 32 H 1.09000 * 109.47032 * 329.99810 * 14 13 12 33 33 H 1.08994 * 109.46958 * 210.00217 * 14 13 12 34 34 H 0.97007 * 120.00143 * 359.97438 * 15 14 13 35 35 H 1.08002 * 119.90756 * 0.02562 * 19 18 16 36 36 H 1.07999 * 120.00790 * 180.23078 * 20 19 18 37 37 H 1.07995 * 119.83792 * 180.02562 * 21 20 19 38 38 H 1.09001 * 110.75484 * 269.56539 * 25 24 23 39 39 H 1.08994 * 110.91296 * 146.27108 * 25 24 23 40 40 H 1.08999 * 110.93774 * 313.71334 * 26 22 21 41 41 H 1.09001 * 110.94035 * 77.37078 * 26 22 21 42 42 H 1.07997 * 119.96217 * 179.70397 * 27 13 12 43 43 H 1.07998 * 120.03117 * 180.27238 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1032 1.6964 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4571 -3.4394 0.0952 12 6 4.2023 -4.5970 0.2038 13 6 3.5685 -5.8204 0.3244 14 6 4.3847 -7.0818 0.4421 15 7 4.6553 -7.3581 1.8551 16 6 5.3745 -8.4433 2.2038 17 8 5.7983 -9.1932 1.3455 18 6 5.6476 -8.7213 3.6266 19 6 5.1622 -7.8613 4.6124 20 6 5.4152 -8.1187 5.9421 21 6 6.1577 -9.2326 6.3031 22 6 6.6446 -10.0855 5.3386 23 6 6.3966 -9.8543 3.9918 24 8 6.9454 -10.8246 3.2152 25 6 7.9643 -11.5100 3.9631 26 6 7.4844 -11.3457 5.4247 27 6 2.1871 -5.8891 0.3314 28 6 1.4364 -4.7345 0.2291 29 1 -0.4850 0.8400 -0.0004 30 1 3.9526 -2.4846 -0.0002 31 1 5.2811 -4.5471 0.1937 32 1 5.3273 -6.9556 -0.0905 33 1 3.8310 -7.9145 0.0085 34 1 4.3175 -6.7597 2.5398 35 1 4.5860 -6.9918 4.3323 36 1 5.0351 -7.4532 6.7030 37 1 6.3543 -9.4323 7.3461 38 1 8.9346 -11.0346 3.8194 39 1 8.0073 -12.5635 3.6869 40 1 8.3294 -11.2053 6.0988 41 1 6.8786 -12.1972 5.7345 42 1 1.6951 -6.8463 0.4208 43 1 0.3578 -4.7884 0.2391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433661004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:51 Heat of formation + Delta-G solvation = -39.242845 kcal Electronic energy + Delta-G solvation = -27261.668722 eV Core-core repulsion = 23238.073408 eV Total energy + Delta-G solvation = -4023.595315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.50577 -39.59410 -38.96820 -37.53140 -36.82245 -34.38531 -33.08159 -32.36479 -30.81020 -30.27780 -29.96415 -29.23261 -26.02505 -25.02230 -24.05580 -22.88475 -22.26223 -22.05173 -20.63496 -20.31584 -18.11288 -17.98758 -17.52325 -16.96556 -16.83671 -16.43712 -15.57947 -15.29753 -15.20025 -14.64847 -14.56317 -14.32799 -14.05600 -13.78197 -13.70802 -13.50584 -13.42380 -13.24456 -12.89074 -12.78434 -12.61302 -12.16922 -12.12599 -12.05032 -11.68091 -11.57050 -11.39233 -11.20723 -10.96012 -10.79537 -10.69833 -10.50625 -9.83986 -9.43204 -9.28958 -8.90922 -8.89963 -8.46165 -8.28537 -7.32910 -6.53079 -4.12041 0.58904 0.98537 2.06920 2.13098 2.76017 2.96631 3.08592 3.08951 3.12669 3.37654 3.60736 3.90266 3.99381 4.17886 4.42915 4.51571 4.61271 4.69532 4.81189 4.95030 5.01702 5.06218 5.08983 5.17641 5.27124 5.29623 5.33034 5.44020 5.55918 5.67210 5.81705 5.84000 5.90284 6.00094 6.06027 6.12470 6.22751 6.35216 6.53977 6.60576 6.80582 6.83264 6.95566 7.14152 7.27630 7.34988 7.62940 7.72037 7.91485 8.31279 8.92104 9.60339 10.64323 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.001993 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.725355 B =14045.592894 C =14640.044107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.215 4.215 14 C 0.180 3.820 15 N -0.719 5.719 16 C 0.553 3.447 17 O -0.532 6.532 18 C -0.155 4.155 19 C -0.051 4.051 20 C -0.156 4.156 21 C -0.046 4.046 22 C -0.190 4.190 23 C 0.168 3.832 24 O -0.276 6.276 25 C 0.045 3.955 26 C -0.108 4.108 27 C -0.054 4.054 28 C -0.195 4.195 29 H 0.272 0.728 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.538 -18.163 13.108 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.069 4.069 13 C -0.216 4.216 14 C 0.058 3.942 15 N -0.371 5.371 16 C 0.340 3.660 17 O -0.410 6.410 18 C -0.159 4.159 19 C -0.070 4.070 20 C -0.174 4.174 21 C -0.065 4.065 22 C -0.191 4.191 23 C 0.120 3.880 24 O -0.188 6.188 25 C -0.030 4.030 26 C -0.146 4.146 27 C -0.073 4.073 28 C -0.215 4.215 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.235 0.765 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.351 -18.542 12.180 25.892 hybrid contribution 0.373 1.168 0.509 1.327 sum 13.723 -17.374 12.689 25.518 Atomic orbital electron populations 1.70021 1.06002 1.27977 1.45350 1.25315 0.95863 0.98929 0.96355 0.85766 0.78722 0.79621 0.79260 1.19428 1.20220 1.19429 1.21304 0.91837 0.80735 1.53109 0.88976 1.83978 1.34489 1.11548 1.77541 1.19442 0.90321 0.88053 0.91628 1.21157 0.93767 0.98941 1.11755 1.20650 0.98406 0.91614 0.96276 1.19219 0.93576 0.93596 1.15224 1.19983 0.98540 0.94890 0.80761 1.46251 1.54709 1.26596 1.09586 1.18089 0.78709 0.81319 0.87906 1.90813 1.51397 1.47600 1.51147 1.19340 1.06785 0.95563 0.94232 1.21176 0.96157 0.97373 0.92303 1.20996 1.01517 0.98774 0.96087 1.20476 0.94603 0.92623 0.98764 1.20807 1.05878 0.99229 0.93202 1.19466 0.91938 0.87666 0.88946 1.87024 1.49469 1.43522 1.38771 1.23935 0.91199 0.98665 0.89248 1.21812 0.99412 0.95468 0.97859 1.20544 0.92757 0.96856 0.97137 1.20214 0.99675 0.90232 1.11332 0.91826 0.85417 0.87373 0.91499 0.91440 0.76488 0.84459 0.84642 0.85342 0.90305 0.87322 0.88880 0.88992 0.86921 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.59 13.67 55.48 0.76 -23.83 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.95 29.55 -169.99 -5.02 14.93 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.39 -10.67 9.49 30.89 0.29 -10.37 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.78 9.76 0.05 0.00 -4.78 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 C -0.24 -4.89 9.17 -39.39 -0.36 -5.25 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.21 -3.48 5.25 -104.57 -0.55 -4.03 16 14 C 0.18 2.63 5.80 -5.19 -0.03 2.60 16 15 N -0.72 -9.70 5.50 -62.54 -0.34 -10.04 16 16 C 0.55 8.35 7.76 -12.48 -0.10 8.26 16 17 O -0.53 -9.95 15.87 -10.29 -0.16 -10.11 16 18 C -0.16 -1.98 5.89 -104.72 -0.62 -2.60 16 19 C -0.05 -0.50 9.51 -39.26 -0.37 -0.88 16 20 C -0.16 -1.25 10.05 -39.60 -0.40 -1.65 16 21 C -0.05 -0.36 10.02 -39.64 -0.40 -0.76 16 22 C -0.19 -1.78 6.27 -104.12 -0.65 -2.43 16 23 C 0.17 2.10 6.72 -38.44 -0.26 1.84 16 24 O -0.28 -3.63 10.13 -34.86 -0.35 -3.98 16 25 C 0.04 0.34 8.01 38.06 0.30 0.65 16 26 C -0.11 -0.69 7.12 -26.50 -0.19 -0.88 16 27 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 28 C -0.20 -3.92 9.99 -39.40 -0.39 -4.32 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 30 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 31 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.40 4.66 6.47 -40.82 -0.26 4.40 16 35 H 0.14 1.11 6.37 -52.49 -0.33 0.77 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -33.79 369.40 -9.35 -43.14 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -4.95 Total: 7.04 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -4.84 Total: -17.94 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.41 Total: -33.87 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.52 Total: -18.87 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.79 -9.35 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433661004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.897 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds