Wall clock time and date at job start Tue Mar 31 2020 22:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86809 * 119.99955 * 2 1 4 4 H 1.48500 * 109.47107 * 240.00687 * 3 2 1 5 5 H 1.48500 * 109.46836 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46830 * 120.00450 * 3 2 1 7 7 C 1.40275 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00276 * 188.96774 * 7 2 1 9 9 C 1.40889 * 119.99689 * 8.96400 * 7 2 1 10 10 C 1.40712 * 120.32899 * 35.85953 * 9 7 2 11 11 C 1.37595 * 119.87905 * 180.29524 * 10 9 7 12 12 C 1.38823 * 120.57416 * 359.68004 * 11 10 9 13 13 C 1.38223 * 120.67385 * 359.97438 * 12 11 10 14 14 C 1.39228 * 120.09230 * 0.03039 * 13 12 11 15 15 C 1.47431 * 120.28165 * 180.02562 * 14 13 12 16 16 O 1.21606 * 119.99814 * 175.34995 * 15 14 13 17 17 N 1.34778 * 119.99891 * 355.34658 * 15 14 13 18 18 C 1.46505 * 119.99750 * 180.02562 * 17 15 14 19 19 H 1.09000 * 109.73140 * 34.41211 * 18 17 15 20 20 C 1.53411 * 109.70184 * 273.82382 * 18 17 15 21 21 O 1.42832 * 108.37688 * 175.55991 * 20 18 17 22 22 C 1.35841 * 117.87345 * 49.10310 * 21 20 18 23 23 C 1.39150 * 118.50402 * 163.21672 * 22 21 20 24 24 C 1.37968 * 120.21874 * 179.97438 * 23 22 21 25 25 C 1.38298 * 119.95839 * 359.63310 * 24 23 22 26 26 C 1.38108 * 119.98122 * 0.26075 * 25 24 23 27 27 C 1.38374 * 121.80646 * 342.93928 * 22 21 20 28 28 C 1.50776 * 121.40959 * 0.36151 * 27 22 21 29 29 H 1.08997 * 109.43448 * 102.24833 * 28 27 22 30 30 O 1.42893 * 109.43928 * 222.16895 * 28 27 22 31 31 H 0.97001 * 120.00283 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.06165 * 359.97352 * 10 9 7 33 33 H 1.07999 * 119.71176 * 179.69578 * 11 10 9 34 34 H 1.07997 * 119.66513 * 180.02562 * 12 11 10 35 35 H 1.07996 * 119.95468 * 179.97438 * 13 12 11 36 36 H 0.96996 * 120.00303 * 0.02562 * 17 15 14 37 37 H 1.09003 * 109.67748 * 295.30481 * 20 18 17 38 38 H 1.08999 * 109.67887 * 55.81366 * 20 18 17 39 39 H 1.07995 * 119.88914 * 359.57313 * 23 22 21 40 40 H 1.07993 * 120.02317 * 179.82456 * 24 23 22 41 41 H 1.07999 * 120.00788 * 180.28323 * 25 24 23 42 42 H 1.07995 * 119.84075 * 179.97438 * 26 25 24 43 43 H 0.96698 * 114.00374 * 300.00373 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0939 1.6966 -1.2126 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0077 -1.2148 -0.0005 8 1 3.0778 -1.2206 0.1452 9 6 1.3162 -2.4274 -0.1912 10 6 0.2162 -2.4880 -1.0666 11 6 -0.4563 -3.6756 -1.2412 12 6 -0.0553 -4.8201 -0.5655 13 6 1.0264 -4.7887 0.2945 14 6 1.7269 -3.6018 0.4920 15 6 2.8816 -3.5637 1.4079 16 8 3.5413 -2.5475 1.5126 17 7 3.2060 -4.6551 2.1291 18 6 4.3531 -4.6171 3.0396 19 1 4.4424 -3.6230 3.4777 20 6 5.6354 -4.9604 2.2706 21 8 6.7453 -4.8140 3.1576 22 6 6.6655 -5.4056 4.3778 23 6 7.8369 -5.5827 5.1078 24 6 7.7967 -6.1792 6.3512 25 6 6.5881 -6.5961 6.8785 26 6 5.4232 -6.4199 6.1577 27 6 5.4581 -5.8261 4.9069 28 6 4.1659 -5.6550 4.1490 29 1 3.8749 -6.6085 3.7084 30 8 3.1440 -5.2135 5.0449 31 1 -0.4850 0.8400 0.0004 32 1 -0.1030 -1.6027 -1.5965 33 1 -1.3032 -3.7179 -1.9100 34 1 -0.5935 -5.7446 -0.7138 35 1 1.3281 -5.6858 0.8145 36 1 2.6800 -5.4658 2.0454 37 1 5.5844 -5.9887 1.9124 38 1 5.7489 -4.2823 1.4248 39 1 8.7814 -5.2581 4.6968 40 1 8.7081 -6.3176 6.9138 41 1 6.5551 -7.0589 7.8537 42 1 4.4807 -6.7467 6.5715 43 1 2.9689 -5.8244 5.7737 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434029230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:38 Heat of formation + Delta-G solvation = -69.119868 kcal Electronic energy + Delta-G solvation = -28831.480737 eV Core-core repulsion = 24806.589857 eV Total energy + Delta-G solvation = -4024.890879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.06900 -38.99570 -37.70293 -37.31949 -36.57928 -34.25081 -33.58351 -31.76984 -30.51449 -30.33633 -29.78437 -28.71537 -25.51131 -25.38385 -23.70811 -22.67394 -21.97689 -20.93658 -20.23738 -19.48648 -18.61715 -17.59959 -16.99078 -16.77669 -16.63037 -15.95289 -15.45631 -15.23585 -14.92652 -14.60982 -14.27117 -14.14566 -13.87264 -13.84977 -13.69333 -13.22951 -13.07657 -12.84781 -12.70461 -12.35552 -12.10365 -11.99987 -11.63031 -11.44082 -11.22230 -11.11193 -11.00341 -10.77663 -10.68138 -10.53373 -10.33123 -10.12414 -9.69438 -9.25628 -9.09604 -8.63877 -8.42719 -8.27387 -7.61464 -7.35555 -6.80379 -4.40598 1.02726 1.20541 2.32603 2.81804 3.09171 3.10462 3.16567 3.25739 3.44851 3.75565 3.97187 3.98783 4.10513 4.38335 4.51459 4.60041 4.70665 4.80894 4.96628 5.00023 5.17248 5.26664 5.27134 5.41016 5.60234 5.68172 5.71608 5.87162 5.96109 6.04627 6.16171 6.17412 6.26272 6.27253 6.52689 6.58454 6.92203 6.95411 7.11209 7.21043 7.30432 7.42678 7.44045 7.59479 7.85670 7.96484 8.16117 8.29673 8.66168 8.81543 8.88817 9.34300 10.15584 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.003151 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.527048 B = 8883.777691 C = 9982.301929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.422 4.422 8 H 0.110 0.890 9 C 0.148 3.852 10 C -0.146 4.146 11 C -0.096 4.096 12 C -0.245 4.245 13 C -0.056 4.056 14 C -0.261 4.261 15 C 0.567 3.433 16 O -0.534 6.534 17 N -0.734 5.734 18 C 0.125 3.875 19 H 0.107 0.893 20 C 0.056 3.944 21 O -0.309 6.309 22 C 0.146 3.854 23 C -0.151 4.151 24 C -0.083 4.083 25 C -0.156 4.156 26 C -0.077 4.077 27 C -0.194 4.194 28 C 0.146 3.854 29 H 0.071 0.929 30 O -0.541 6.541 31 H 0.283 0.717 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.394 0.606 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.285 -13.046 9.395 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.450 4.450 8 H 0.128 0.872 9 C 0.144 3.856 10 C -0.165 4.165 11 C -0.114 4.114 12 C -0.264 4.264 13 C -0.075 4.075 14 C -0.266 4.266 15 C 0.362 3.638 16 O -0.412 6.412 17 N -0.389 5.389 18 C 0.019 3.981 19 H 0.125 0.875 20 C -0.020 4.020 21 O -0.221 6.221 22 C 0.101 3.899 23 C -0.170 4.170 24 C -0.101 4.101 25 C -0.174 4.174 26 C -0.095 4.095 27 C -0.196 4.196 28 C 0.086 3.914 29 H 0.089 0.911 30 O -0.347 6.347 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 9.699 -11.486 8.972 17.507 hybrid contribution -0.359 -0.337 0.539 0.730 sum 9.340 -11.823 9.511 17.818 Atomic orbital electron populations 1.69706 1.07786 1.29752 1.34542 1.26148 0.94788 1.01826 0.92137 0.86212 0.79982 0.79354 0.80361 1.18696 1.20477 1.18600 1.20281 0.97693 0.89396 1.37616 0.87193 1.17470 0.89879 0.91288 0.86997 1.21340 0.98641 0.96268 1.00245 1.20800 0.98204 0.93654 0.98792 1.20280 1.02102 0.97544 1.06466 1.20631 0.94989 0.95183 0.96679 1.19377 1.02934 0.96567 1.07674 1.18466 0.84415 0.81549 0.79366 1.90670 1.53239 1.30567 1.66759 1.45843 1.31407 1.16529 1.45156 1.21214 0.86901 1.00975 0.89048 0.87466 1.23543 0.83626 1.02782 0.92073 1.86053 1.42523 1.70227 1.23325 1.18799 0.92974 0.92298 0.85863 1.20640 0.96733 1.03780 0.95826 1.20961 0.98187 0.96525 0.94423 1.20971 0.92455 1.03439 1.00532 1.20737 0.98630 0.97129 0.93046 1.20506 0.94691 1.06258 0.98162 1.20750 0.84386 0.96960 0.89288 0.91103 1.86724 1.56041 1.50372 1.41515 0.90638 0.86651 0.89056 0.89085 0.89327 0.77069 0.91490 0.85905 0.84980 0.85330 0.85752 0.85935 0.77809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.67 11.25 55.56 0.63 -20.04 16 2 C 0.07 1.80 5.25 -17.30 -0.09 1.71 16 3 Si 0.92 19.85 29.57 -169.99 -5.03 14.82 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.42 -11.58 7.78 -37.81 -0.29 -11.88 16 8 H 0.11 3.12 5.73 -52.49 -0.30 2.82 16 9 C 0.15 3.94 5.48 -106.54 -0.58 3.36 16 10 C -0.15 -3.68 8.62 -38.88 -0.34 -4.01 16 11 C -0.10 -2.14 10.01 -39.60 -0.40 -2.53 16 12 C -0.24 -5.12 10.03 -39.37 -0.39 -5.52 16 13 C -0.06 -1.17 9.52 -39.22 -0.37 -1.54 16 14 C -0.26 -6.28 5.92 -104.37 -0.62 -6.90 16 15 C 0.57 12.94 7.70 -12.52 -0.10 12.84 16 16 O -0.53 -13.88 13.18 5.27 0.07 -13.81 16 17 N -0.73 -12.86 5.04 -54.63 -0.28 -13.14 16 18 C 0.13 2.00 2.34 -67.68 -0.16 1.84 16 19 H 0.11 2.11 7.57 -51.93 -0.39 1.71 16 20 C 0.06 0.80 6.63 37.37 0.25 1.05 16 21 O -0.31 -4.53 10.27 -19.24 -0.20 -4.73 16 22 C 0.15 1.94 6.47 -39.19 -0.25 1.68 16 23 C -0.15 -1.68 9.94 -39.34 -0.39 -2.07 16 24 C -0.08 -0.75 10.04 -39.66 -0.40 -1.15 16 25 C -0.16 -1.37 10.05 -39.61 -0.40 -1.77 16 26 C -0.08 -0.75 9.26 -39.53 -0.37 -1.12 16 27 C -0.19 -2.37 5.58 -104.44 -0.58 -2.95 16 28 C 0.15 1.85 3.13 -27.81 -0.09 1.77 16 29 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 30 O -0.54 -7.16 13.18 -35.23 -0.46 -7.63 16 31 H 0.28 6.73 8.29 -40.82 -0.34 6.39 16 32 H 0.12 2.97 6.72 -52.49 -0.35 2.62 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.09 1.51 6.42 -52.49 -0.34 1.17 16 36 H 0.39 5.95 6.63 -40.82 -0.27 5.68 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.85 6.75 -52.49 -0.35 0.49 16 43 H 0.37 3.10 7.48 45.56 0.34 3.44 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -31.92 357.83 -9.63 -41.55 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -4.18 Total: 14.77 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -5.57 Total: -17.18 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.35 Total: -33.18 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.59 Total: -26.17 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.92 -9.63 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434029230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.570 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds