Wall clock time and date at job start Tue Mar 31 2020 22:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86809 * 119.99955 * 2 1 4 4 H 1.48500 * 109.47107 * 240.00687 * 3 2 1 5 5 H 1.48500 * 109.46836 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46830 * 120.00450 * 3 2 1 7 7 C 1.40275 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00276 * 188.96774 * 7 2 1 9 9 C 1.40889 * 119.99689 * 8.96400 * 7 2 1 10 10 C 1.40712 * 120.32899 * 35.85953 * 9 7 2 11 11 C 1.37595 * 119.87905 * 180.29524 * 10 9 7 12 12 C 1.38823 * 120.57416 * 359.68004 * 11 10 9 13 13 C 1.38223 * 120.67385 * 359.97438 * 12 11 10 14 14 C 1.39228 * 120.09230 * 0.03039 * 13 12 11 15 15 C 1.47431 * 120.28165 * 180.02562 * 14 13 12 16 16 O 1.21606 * 119.99814 * 175.34995 * 15 14 13 17 17 N 1.34778 * 119.99891 * 355.34658 * 15 14 13 18 18 C 1.46505 * 119.99750 * 180.02562 * 17 15 14 19 19 H 1.09000 * 109.73140 * 34.41211 * 18 17 15 20 20 C 1.53411 * 109.70184 * 273.82382 * 18 17 15 21 21 O 1.42832 * 108.37688 * 175.55991 * 20 18 17 22 22 C 1.35841 * 117.87345 * 49.10310 * 21 20 18 23 23 C 1.39150 * 118.50402 * 163.21672 * 22 21 20 24 24 C 1.37968 * 120.21874 * 179.97438 * 23 22 21 25 25 C 1.38298 * 119.95839 * 359.63310 * 24 23 22 26 26 C 1.38108 * 119.98122 * 0.26075 * 25 24 23 27 27 C 1.38374 * 121.80646 * 342.93928 * 22 21 20 28 28 C 1.50776 * 121.40959 * 0.36151 * 27 22 21 29 29 H 1.08997 * 109.43448 * 102.24833 * 28 27 22 30 30 O 1.42893 * 109.43928 * 222.16895 * 28 27 22 31 31 H 0.97001 * 120.00283 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.06165 * 359.97352 * 10 9 7 33 33 H 1.07999 * 119.71176 * 179.69578 * 11 10 9 34 34 H 1.07997 * 119.66513 * 180.02562 * 12 11 10 35 35 H 1.07996 * 119.95468 * 179.97438 * 13 12 11 36 36 H 0.96996 * 120.00303 * 0.02562 * 17 15 14 37 37 H 1.09003 * 109.67748 * 295.30481 * 20 18 17 38 38 H 1.08999 * 109.67887 * 55.81366 * 20 18 17 39 39 H 1.07995 * 119.88914 * 359.57313 * 23 22 21 40 40 H 1.07993 * 120.02317 * 179.82456 * 24 23 22 41 41 H 1.07999 * 120.00788 * 180.28323 * 25 24 23 42 42 H 1.07995 * 119.84075 * 179.97438 * 26 25 24 43 43 H 0.96698 * 114.00374 * 300.00373 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0939 1.6966 -1.2126 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0077 -1.2148 -0.0005 8 1 3.0778 -1.2206 0.1452 9 6 1.3162 -2.4274 -0.1912 10 6 0.2162 -2.4880 -1.0666 11 6 -0.4563 -3.6756 -1.2412 12 6 -0.0553 -4.8201 -0.5655 13 6 1.0264 -4.7887 0.2945 14 6 1.7269 -3.6018 0.4920 15 6 2.8816 -3.5637 1.4079 16 8 3.5413 -2.5475 1.5126 17 7 3.2060 -4.6551 2.1291 18 6 4.3531 -4.6171 3.0396 19 1 4.4424 -3.6230 3.4777 20 6 5.6354 -4.9604 2.2706 21 8 6.7453 -4.8140 3.1576 22 6 6.6655 -5.4056 4.3778 23 6 7.8369 -5.5827 5.1078 24 6 7.7967 -6.1792 6.3512 25 6 6.5881 -6.5961 6.8785 26 6 5.4232 -6.4199 6.1577 27 6 5.4581 -5.8261 4.9069 28 6 4.1659 -5.6550 4.1490 29 1 3.8749 -6.6085 3.7084 30 8 3.1440 -5.2135 5.0449 31 1 -0.4850 0.8400 0.0004 32 1 -0.1030 -1.6027 -1.5965 33 1 -1.3032 -3.7179 -1.9100 34 1 -0.5935 -5.7446 -0.7138 35 1 1.3281 -5.6858 0.8145 36 1 2.6800 -5.4658 2.0454 37 1 5.5844 -5.9887 1.9124 38 1 5.7489 -4.2823 1.4248 39 1 8.7814 -5.2581 4.6968 40 1 8.7081 -6.3176 6.9138 41 1 6.5551 -7.0589 7.8537 42 1 4.4807 -6.7467 6.5715 43 1 2.9689 -5.8244 5.7737 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434029230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:37 Heat of formation + Delta-G solvation = -91.410702 kcal Electronic energy + Delta-G solvation = -28832.447340 eV Core-core repulsion = 24806.589857 eV Total energy + Delta-G solvation = -4025.857483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.08749 -40.64025 -38.82126 -38.55679 -37.97985 -35.86493 -35.31578 -32.87294 -31.91176 -31.55161 -31.27514 -30.12789 -27.31552 -26.45005 -24.96191 -23.78237 -23.28635 -22.65525 -21.49445 -21.04564 -19.56609 -19.39783 -18.26363 -17.92400 -17.83464 -17.20659 -17.03584 -16.50498 -16.14347 -15.97093 -15.64791 -15.56942 -15.17651 -15.09706 -14.83206 -14.76683 -14.49507 -14.34739 -13.96022 -13.80712 -13.50492 -13.18906 -12.94630 -12.87946 -12.83936 -12.47271 -12.33851 -12.30132 -12.09682 -11.95711 -11.88438 -11.48111 -11.25074 -11.14731 -10.27677 -10.15313 -9.86300 -9.41886 -9.22523 -9.19256 -8.69069 -6.38367 0.24784 0.40710 0.49877 1.01791 1.31252 1.42657 1.49262 1.98390 2.19514 2.28406 2.40674 2.68886 2.77969 3.04149 3.43013 3.51643 3.68983 3.74190 3.84979 4.04320 4.17131 4.20827 4.31354 4.37112 4.45283 4.48630 4.55027 4.57289 4.60588 4.75886 4.92465 4.98973 5.08876 5.22858 5.26700 5.33064 5.39775 5.48835 5.53532 5.61356 5.81063 5.81961 6.04391 6.10559 6.34492 6.34625 6.61695 6.71624 6.76711 6.90475 6.99120 7.60107 8.29023 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.003151 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.527048 B = 8883.777691 C = 9982.301929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.277 1.277 7 C -0.465 4.465 8 H 0.086 0.914 9 C 0.117 3.883 10 C -0.176 4.176 11 C -0.092 4.092 12 C -0.233 4.233 13 C -0.052 4.052 14 C -0.277 4.277 15 C 0.563 3.437 16 O -0.577 6.577 17 N -0.711 5.711 18 C 0.124 3.876 19 H 0.060 0.940 20 C 0.064 3.936 21 O -0.328 6.328 22 C 0.109 3.891 23 C -0.165 4.165 24 C -0.079 4.079 25 C -0.151 4.151 26 C -0.079 4.079 27 C -0.209 4.209 28 C 0.156 3.844 29 H 0.102 0.898 30 O -0.564 6.564 31 H 0.289 0.711 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.410 0.590 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.965 -16.655 11.242 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.202 1.202 7 C -0.494 4.494 8 H 0.104 0.896 9 C 0.113 3.887 10 C -0.195 4.195 11 C -0.110 4.110 12 C -0.252 4.252 13 C -0.071 4.071 14 C -0.282 4.282 15 C 0.357 3.643 16 O -0.458 6.458 17 N -0.366 5.366 18 C 0.017 3.983 19 H 0.078 0.922 20 C -0.013 4.013 21 O -0.242 6.242 22 C 0.065 3.935 23 C -0.184 4.184 24 C -0.097 4.097 25 C -0.169 4.169 26 C -0.096 4.096 27 C -0.210 4.210 28 C 0.097 3.903 29 H 0.119 0.881 30 O -0.373 6.373 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.248 0.752 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.177 0.823 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 9.365 -15.164 10.842 20.861 hybrid contribution -0.236 0.513 0.099 0.574 sum 9.129 -14.650 10.940 20.437 Atomic orbital electron populations 1.69729 1.08552 1.30661 1.36039 1.26782 0.95602 1.04261 0.91608 0.85356 0.78929 0.76326 0.79665 1.18030 1.18200 1.20186 1.20235 0.96910 0.91200 1.41089 0.89613 1.17851 0.90882 0.92175 0.87785 1.21274 0.99766 0.97199 1.01270 1.21197 0.98218 0.92981 0.98614 1.20822 1.01435 0.98491 1.04478 1.21073 0.94185 0.95438 0.96362 1.19759 1.03582 0.97229 1.07644 1.18503 0.83992 0.82147 0.79676 1.90653 1.54540 1.32598 1.67992 1.45495 1.31670 1.15520 1.43949 1.21245 0.86905 1.00056 0.90053 0.92196 1.23345 0.82941 1.03651 0.91342 1.86006 1.42338 1.71397 1.24438 1.19195 0.94530 0.94122 0.85681 1.20896 0.96370 1.04347 0.96757 1.21375 0.99848 0.95000 0.93495 1.21433 0.91804 1.02117 1.01496 1.21127 1.00530 0.96140 0.91851 1.20555 0.93705 1.07395 0.99373 1.20617 0.85018 0.96347 0.88347 0.88078 1.86677 1.56099 1.51954 1.42613 0.90036 0.88467 0.86141 0.84708 0.84745 0.75200 0.88570 0.88333 0.84601 0.82340 0.82509 0.82893 0.75237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.03 11.25 21.88 0.25 -44.78 16 2 C 0.03 1.77 5.25 85.37 0.45 2.21 16 3 Si 0.98 43.07 29.57 68.60 2.03 45.10 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.47 -27.41 7.78 23.41 0.18 -27.23 16 8 H 0.09 5.32 5.73 -2.91 -0.02 5.31 16 9 C 0.12 6.51 5.48 -21.11 -0.12 6.40 16 10 C -0.18 -9.12 8.62 22.72 0.20 -8.92 16 11 C -0.09 -3.94 10.01 22.26 0.22 -3.72 16 12 C -0.23 -8.92 10.03 22.41 0.22 -8.70 16 13 C -0.05 -2.04 9.52 22.50 0.21 -1.83 16 14 C -0.28 -13.56 5.92 -19.70 -0.12 -13.68 16 15 C 0.56 26.63 7.70 86.66 0.67 27.30 16 16 O -0.58 -32.25 13.18 -4.05 -0.05 -32.30 16 17 N -0.71 -24.80 5.04 -445.01 -2.24 -27.04 16 18 C 0.12 4.03 2.34 45.15 0.11 4.13 16 19 H 0.06 2.53 7.57 -2.39 -0.02 2.52 16 20 C 0.06 1.88 6.63 72.12 0.48 2.36 16 21 O -0.33 -10.05 10.27 -91.76 -0.94 -11.00 16 22 C 0.11 2.87 6.47 22.52 0.15 3.02 16 23 C -0.17 -3.50 9.94 22.42 0.22 -3.28 16 24 C -0.08 -1.20 10.04 22.22 0.22 -0.98 16 25 C -0.15 -2.05 10.05 22.25 0.22 -1.82 16 26 C -0.08 -1.26 9.26 22.30 0.21 -1.05 16 27 C -0.21 -4.73 5.58 -19.74 -0.11 -4.84 16 28 C 0.16 3.70 3.13 29.90 0.09 3.80 16 29 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 30 O -0.56 -13.87 13.18 -148.98 -1.96 -15.83 16 31 H 0.29 14.32 8.29 -92.71 -0.77 13.55 16 32 H 0.10 5.28 6.72 -2.91 -0.02 5.26 16 33 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 35 H 0.13 3.96 6.42 -2.91 -0.02 3.94 16 36 H 0.41 11.39 6.63 -92.71 -0.61 10.78 16 37 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 42 H 0.15 1.40 6.75 -2.91 -0.02 1.38 16 43 H 0.40 5.29 7.48 -74.06 -0.55 4.74 16 Total: -1.00 -76.79 357.83 0.50 -76.29 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -0.09 Total: 36.39 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 3.51 Total: -26.82 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -2.00 Total: -71.82 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -2.96 Total: -59.13 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -76.79 0.50 -76.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434029230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.121 kcal (2) G-P(sol) polarization free energy of solvation -76.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds