Wall clock time and date at job start Tue Mar 31 2020 22:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 117.00378 * 2 1 4 4 O 1.20828 * 119.99392 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00264 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47005 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47027 * 184.87706 * 6 5 3 8 8 C 1.36847 * 119.99836 * 277.19629 * 7 6 5 9 9 H 1.08000 * 119.99984 * 45.22827 * 8 7 6 10 10 C 1.39050 * 119.99667 * 225.22743 * 8 7 6 11 11 N 1.31367 * 120.00119 * 26.54085 * 10 8 7 12 12 Si 1.86804 * 119.99774 * 206.53731 * 10 8 7 13 13 H 1.48504 * 109.47036 * 64.99987 * 12 10 8 14 14 H 1.48495 * 109.47096 * 185.00062 * 12 10 8 15 15 H 1.48500 * 109.46788 * 305.00170 * 12 10 8 16 16 C 1.34774 * 119.99755 * 97.19518 * 7 6 5 17 17 O 1.21667 * 119.99556 * 182.09017 * 16 7 6 18 18 C 1.47073 * 120.00184 * 2.09205 * 16 7 6 19 19 C 1.37116 * 126.65462 * 241.48543 * 18 16 7 20 20 C 1.40932 * 105.45968 * 180.02562 * 19 18 16 21 21 C 1.47633 * 126.26995 * 180.02562 * 20 19 18 22 22 O 1.21486 * 119.99960 * 359.97438 * 21 20 19 23 23 O 1.34714 * 120.00094 * 179.97438 * 21 20 19 24 24 C 1.45194 * 117.00268 * 179.97438 * 23 21 20 25 25 N 1.32004 * 107.45827 * 0.02562 * 20 19 18 26 26 N 1.28456 * 110.51135 * 359.97438 * 25 20 19 27 27 C 1.46500 * 125.06045 * 179.97438 * 26 25 20 28 28 H 1.08997 * 109.47088 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47255 * 300.00304 * 1 2 3 30 30 H 1.09006 * 109.46801 * 60.00113 * 1 2 3 31 31 H 1.09000 * 109.47392 * 60.00075 * 5 3 2 32 32 H 1.08999 * 109.47008 * 299.99505 * 5 3 2 33 33 H 1.08999 * 109.47387 * 64.87739 * 6 5 3 34 34 H 1.09001 * 109.46981 * 304.87444 * 6 5 3 35 35 H 0.97002 * 119.99792 * 184.97089 * 11 10 8 36 36 H 1.08000 * 127.26912 * 0.02562 * 19 18 16 37 37 H 1.09000 * 109.47714 * 59.99793 * 24 23 21 38 38 H 1.09001 * 109.47687 * 180.02562 * 24 23 21 39 39 H 1.09011 * 109.47191 * 299.99834 * 24 23 21 40 40 H 1.09001 * 109.47282 * 98.67181 * 27 26 25 41 41 H 1.08999 * 109.47069 * 218.67261 * 27 26 25 42 42 H 1.09007 * 109.47121 * 338.66893 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4585 2.8200 -0.1171 8 6 6.2425 2.6807 0.9959 9 1 6.0396 1.8908 1.7039 10 6 7.3004 3.5561 1.2151 11 7 7.2638 4.7694 0.7127 12 14 8.7734 3.0069 2.2240 13 1 9.4795 1.9108 1.5130 14 1 9.6996 4.1523 2.4119 15 1 8.3121 2.5208 3.5492 16 6 6.0278 3.0290 -1.3206 17 8 7.2398 3.0558 -1.4238 18 6 5.1840 3.2247 -2.5093 19 6 5.1518 2.4344 -3.6293 20 6 4.1958 3.0260 -4.4791 21 6 3.7972 2.5424 -5.8158 22 8 4.3103 1.5429 -6.2781 23 8 2.8645 3.2093 -6.5230 24 6 2.5224 2.6769 -7.8297 25 7 3.7220 4.0918 -3.8610 26 7 4.2799 4.2309 -2.7122 27 6 3.9914 5.3076 -1.7615 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 3.9565 0.7805 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 3.6844 3.2148 0.9298 34 1 3.5401 3.2565 -0.8438 35 1 8.0315 5.3553 0.8039 36 1 5.7357 1.5461 -3.8200 37 1 2.1370 1.6632 -7.7196 38 1 1.7619 3.3069 -8.2911 39 1 3.4118 2.6609 -8.4599 40 1 3.2950 4.9469 -1.0044 41 1 4.9167 5.6262 -1.2817 42 1 3.5477 6.1507 -2.2910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438604640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:00 Heat of formation + Delta-G solvation = -102.159912 kcal Electronic energy + Delta-G solvation = -30519.528976 eV Core-core repulsion = 26082.356110 eV Total energy + Delta-G solvation = -4437.172866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.35714 -40.34596 -40.01359 -38.39396 -36.49401 -36.33624 -34.90252 -33.26514 -32.56072 -30.74361 -30.29906 -28.47650 -27.66494 -26.87043 -25.48529 -23.91171 -23.14658 -22.05045 -20.71623 -20.33812 -19.49402 -18.08583 -17.58703 -17.05429 -16.57467 -16.53595 -16.41014 -16.08938 -15.96932 -15.83847 -15.07094 -14.63207 -14.31220 -13.98252 -13.79721 -13.63599 -13.46530 -13.34465 -12.92293 -12.69930 -12.56941 -12.36951 -12.30807 -12.14845 -12.08983 -11.70227 -11.50227 -11.02120 -10.89576 -10.79567 -10.78213 -10.72907 -10.63927 -10.59601 -10.37182 -10.34390 -9.03306 -8.95202 -8.83444 -8.54245 -7.58010 -6.45495 -4.16797 1.50422 2.12555 2.33735 2.42173 2.78199 2.91817 3.22618 3.30396 3.34486 3.36320 3.89249 4.10606 4.51106 4.58579 4.87152 5.05413 5.05778 5.07921 5.12175 5.13016 5.14664 5.23373 5.32288 5.38400 5.41652 5.45981 5.50739 5.63215 5.78414 5.83800 5.89161 6.05138 6.11897 6.34142 6.36081 6.49338 6.58036 6.88799 7.39421 7.75903 7.84108 7.95909 8.16526 8.66797 8.78506 9.26671 9.83615 10.62794 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.004679 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.546633 B = 5982.791763 C = 8105.844111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.130 4.130 6 C 0.108 3.892 7 N -0.430 5.430 8 C -0.358 4.358 9 H 0.087 0.913 10 C 0.086 3.914 11 N -0.830 5.830 12 Si 0.910 3.090 13 H -0.270 1.270 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.539 3.461 17 O -0.519 6.519 18 C 0.012 3.988 19 C -0.145 4.145 20 C -0.022 4.022 21 C 0.562 3.438 22 O -0.503 6.503 23 O -0.346 6.346 24 C 0.036 3.964 25 N -0.231 5.231 26 N -0.256 5.256 27 C 0.076 3.924 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.271 0.729 36 H 0.167 0.833 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 -3.529 -5.510 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.169 4.169 6 C -0.016 4.016 7 N -0.151 5.151 8 C -0.484 4.484 9 H 0.104 0.896 10 C -0.127 4.127 11 N -0.462 5.462 12 Si 0.736 3.264 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.324 3.676 17 O -0.395 6.395 18 C -0.114 4.114 19 C -0.173 4.173 20 C -0.177 4.177 21 C 0.405 3.595 22 O -0.389 6.389 23 O -0.261 6.261 24 C -0.058 4.058 25 N -0.071 5.071 26 N -0.049 5.049 27 C -0.064 4.064 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.184 0.816 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.338 -2.345 -5.722 13.801 hybrid contribution 0.900 -0.791 0.298 1.235 sum -11.439 -3.136 -5.424 13.042 Atomic orbital electron populations 1.23216 0.76878 1.03367 1.02419 1.86539 1.23084 1.33952 1.84283 1.23987 0.92293 0.81093 0.71665 1.90641 1.67369 1.36289 1.45530 1.21942 0.86191 1.02296 1.06480 1.21585 0.84629 0.92365 1.03044 1.43132 1.02599 1.64087 1.05318 1.18922 1.13691 1.14201 1.01583 0.89570 1.25223 0.99234 0.92659 0.95550 1.69853 1.29561 1.04593 1.42169 0.86310 0.81883 0.78810 0.79383 1.19568 1.21167 1.19991 1.16862 0.86628 0.83575 0.80521 1.90705 1.13019 1.52179 1.83562 1.22273 0.96787 0.92428 0.99954 1.21604 1.01338 1.02696 0.91649 1.20363 1.04057 0.98209 0.95111 1.19594 0.76212 0.80470 0.83229 1.90843 1.53473 1.24913 1.69670 1.86648 1.54576 1.53971 1.30918 1.23278 1.01256 1.00129 0.81114 1.73534 1.19565 1.18609 0.95410 1.46063 1.26284 1.20619 1.11922 1.22536 1.05492 0.87538 0.90812 0.88370 0.91995 0.92066 0.87761 0.86818 0.89791 0.91498 0.91886 0.81562 0.91867 0.88100 0.91847 0.88657 0.86947 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.97 10.57 -39.26 -0.41 -5.38 16 3 C 0.47 7.24 7.96 36.00 0.29 7.53 16 4 O -0.51 -8.90 15.67 -18.75 -0.29 -9.19 16 5 C -0.13 -2.06 6.08 -27.89 -0.17 -2.23 16 6 C 0.11 1.99 4.02 -4.04 -0.02 1.98 16 7 N -0.43 -9.62 2.50 -116.15 -0.29 -9.91 16 8 C -0.36 -8.76 9.06 -15.01 -0.14 -8.89 16 9 H 0.09 1.99 7.96 -52.49 -0.42 1.58 16 10 C 0.09 2.19 4.11 -17.45 -0.07 2.11 16 11 N -0.83 -21.92 12.54 55.50 0.70 -21.23 16 12 Si 0.91 20.28 29.63 -169.99 -5.04 15.24 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 C 0.54 12.79 6.41 -12.68 -0.08 12.70 16 17 O -0.52 -14.43 15.38 5.22 0.08 -14.35 16 18 C 0.01 0.24 5.36 -82.48 -0.44 -0.20 16 19 C -0.14 -2.80 10.75 -38.97 -0.42 -3.22 16 20 C -0.02 -0.41 7.13 -82.94 -0.59 -1.00 16 21 C 0.56 9.62 7.97 34.57 0.28 9.89 16 22 O -0.50 -9.16 16.70 -19.26 -0.32 -9.48 16 23 O -0.35 -5.12 10.57 -40.53 -0.43 -5.54 16 24 C 0.04 0.37 10.56 101.05 1.07 1.43 16 25 N -0.23 -4.27 11.97 33.32 0.40 -3.87 16 26 N -0.26 -4.75 3.15 -64.20 -0.20 -4.95 16 27 C 0.08 1.19 10.07 59.85 0.60 1.79 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 34 H 0.07 1.22 3.41 -51.93 -0.18 1.04 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.17 3.02 8.06 -52.49 -0.42 2.60 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.10 1.42 6.23 -51.93 -0.32 1.09 16 41 H 0.11 1.98 8.01 -51.93 -0.42 1.56 16 42 H 0.10 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -32.78 373.39 -3.93 -36.71 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.12 Total: 2.99 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 1.37 Total: 23.32 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.60 Total: -39.95 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -1.38 Total: -43.94 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.04 Total: 15.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.78 -3.93 -36.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438604640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.449 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds