Wall clock time and date at job start Tue Mar 31 2020 22:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 117.00378 * 2 1 4 4 O 1.20828 * 119.99392 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00264 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47005 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47027 * 184.87706 * 6 5 3 8 8 C 1.36847 * 119.99836 * 277.19629 * 7 6 5 9 9 H 1.08000 * 119.99984 * 45.22827 * 8 7 6 10 10 C 1.39050 * 119.99667 * 225.22743 * 8 7 6 11 11 N 1.31367 * 120.00119 * 26.54085 * 10 8 7 12 12 Si 1.86804 * 119.99774 * 206.53731 * 10 8 7 13 13 H 1.48504 * 109.47036 * 64.99987 * 12 10 8 14 14 H 1.48495 * 109.47096 * 185.00062 * 12 10 8 15 15 H 1.48500 * 109.46788 * 305.00170 * 12 10 8 16 16 C 1.34774 * 119.99755 * 97.19518 * 7 6 5 17 17 O 1.21667 * 119.99556 * 182.09017 * 16 7 6 18 18 C 1.47073 * 120.00184 * 2.09205 * 16 7 6 19 19 C 1.37116 * 126.65462 * 241.48543 * 18 16 7 20 20 C 1.40932 * 105.45968 * 180.02562 * 19 18 16 21 21 C 1.47633 * 126.26995 * 180.02562 * 20 19 18 22 22 O 1.21486 * 119.99960 * 359.97438 * 21 20 19 23 23 O 1.34714 * 120.00094 * 179.97438 * 21 20 19 24 24 C 1.45194 * 117.00268 * 179.97438 * 23 21 20 25 25 N 1.32004 * 107.45827 * 0.02562 * 20 19 18 26 26 N 1.28456 * 110.51135 * 359.97438 * 25 20 19 27 27 C 1.46500 * 125.06045 * 179.97438 * 26 25 20 28 28 H 1.08997 * 109.47088 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47255 * 300.00304 * 1 2 3 30 30 H 1.09006 * 109.46801 * 60.00113 * 1 2 3 31 31 H 1.09000 * 109.47392 * 60.00075 * 5 3 2 32 32 H 1.08999 * 109.47008 * 299.99505 * 5 3 2 33 33 H 1.08999 * 109.47387 * 64.87739 * 6 5 3 34 34 H 1.09001 * 109.46981 * 304.87444 * 6 5 3 35 35 H 0.97002 * 119.99792 * 184.97089 * 11 10 8 36 36 H 1.08000 * 127.26912 * 0.02562 * 19 18 16 37 37 H 1.09000 * 109.47714 * 59.99793 * 24 23 21 38 38 H 1.09001 * 109.47687 * 180.02562 * 24 23 21 39 39 H 1.09011 * 109.47191 * 299.99834 * 24 23 21 40 40 H 1.09001 * 109.47282 * 98.67181 * 27 26 25 41 41 H 1.08999 * 109.47069 * 218.67261 * 27 26 25 42 42 H 1.09007 * 109.47121 * 338.66893 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4585 2.8200 -0.1171 8 6 6.2425 2.6807 0.9959 9 1 6.0396 1.8908 1.7039 10 6 7.3004 3.5561 1.2151 11 7 7.2638 4.7694 0.7127 12 14 8.7734 3.0069 2.2240 13 1 9.4795 1.9108 1.5130 14 1 9.6996 4.1523 2.4119 15 1 8.3121 2.5208 3.5492 16 6 6.0278 3.0290 -1.3206 17 8 7.2398 3.0558 -1.4238 18 6 5.1840 3.2247 -2.5093 19 6 5.1518 2.4344 -3.6293 20 6 4.1958 3.0260 -4.4791 21 6 3.7972 2.5424 -5.8158 22 8 4.3103 1.5429 -6.2781 23 8 2.8645 3.2093 -6.5230 24 6 2.5224 2.6769 -7.8297 25 7 3.7220 4.0918 -3.8610 26 7 4.2799 4.2309 -2.7122 27 6 3.9914 5.3076 -1.7615 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 3.9565 0.7805 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 3.6844 3.2148 0.9298 34 1 3.5401 3.2565 -0.8438 35 1 8.0315 5.3553 0.8039 36 1 5.7357 1.5461 -3.8200 37 1 2.1370 1.6632 -7.7196 38 1 1.7619 3.3069 -8.2911 39 1 3.4118 2.6609 -8.4599 40 1 3.2950 4.9469 -1.0044 41 1 4.9167 5.6262 -1.2817 42 1 3.5477 6.1507 -2.2910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438604640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:59 Heat of formation + Delta-G solvation = -122.847282 kcal Electronic energy + Delta-G solvation = -30520.426048 eV Core-core repulsion = 26082.356110 eV Total energy + Delta-G solvation = -4438.069938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.85407 -41.55563 -41.26550 -40.15078 -37.70480 -37.56446 -36.63469 -34.74880 -34.30347 -32.27208 -31.87698 -29.61944 -28.66080 -28.04061 -27.23161 -25.36036 -24.47803 -23.68504 -22.06000 -21.66421 -21.03709 -19.66502 -18.92461 -18.31928 -17.93498 -17.88925 -17.60029 -17.49711 -17.30250 -17.17907 -16.80876 -16.20368 -15.98946 -15.53950 -15.13825 -14.87898 -14.72166 -14.46475 -14.33594 -14.21937 -13.92280 -13.74454 -13.65051 -13.46146 -13.23250 -13.03275 -12.90742 -12.79684 -12.63717 -12.25729 -12.18486 -12.04815 -11.94966 -11.83255 -11.79428 -11.63292 -10.87147 -10.63802 -10.38739 -10.25372 -9.44402 -8.36729 -6.09897 0.10044 0.55607 1.04359 1.11512 1.43295 1.53070 1.54983 1.65608 1.66520 1.93252 2.16284 2.35724 2.81801 3.12559 3.19466 3.62071 3.78232 3.89728 3.93934 4.07545 4.16725 4.25780 4.30184 4.31416 4.32558 4.34011 4.36633 4.43147 4.53331 4.59760 4.70977 4.72073 4.73494 4.94414 5.06685 5.16320 5.32312 5.39490 5.48351 6.08183 6.44017 6.66412 6.72965 6.81691 6.94275 7.40213 7.99921 8.70692 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.004679 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.546633 B = 5982.791763 C = 8105.844111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.474 3.526 4 O -0.532 6.532 5 C -0.125 4.125 6 C 0.112 3.888 7 N -0.431 5.431 8 C -0.370 4.370 9 H 0.098 0.902 10 C 0.043 3.957 11 N -0.858 5.858 12 Si 0.961 3.039 13 H -0.285 1.285 14 H -0.289 1.289 15 H -0.252 1.252 16 C 0.538 3.462 17 O -0.571 6.571 18 C -0.007 4.007 19 C -0.144 4.144 20 C -0.028 4.028 21 C 0.567 3.433 22 O -0.518 6.518 23 O -0.350 6.350 24 C 0.027 3.973 25 N -0.222 5.222 26 N -0.252 5.252 27 C 0.075 3.925 28 H 0.133 0.867 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.266 0.734 36 H 0.172 0.828 37 H 0.069 0.931 38 H 0.136 0.864 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 -4.316 -5.933 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.318 3.682 4 O -0.422 6.422 5 C -0.164 4.164 6 C -0.012 4.012 7 N -0.151 5.151 8 C -0.496 4.496 9 H 0.116 0.884 10 C -0.166 4.166 11 N -0.492 5.492 12 Si 0.786 3.214 13 H -0.211 1.211 14 H -0.215 1.215 15 H -0.176 1.176 16 C 0.324 3.676 17 O -0.451 6.451 18 C -0.133 4.133 19 C -0.172 4.172 20 C -0.183 4.183 21 C 0.410 3.590 22 O -0.406 6.406 23 O -0.265 6.265 24 C -0.066 4.066 25 N -0.062 5.062 26 N -0.045 5.045 27 C -0.064 4.064 28 H 0.151 0.849 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.190 0.810 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.387 -3.148 -6.121 15.948 hybrid contribution 1.353 -0.586 0.340 1.513 sum -13.033 -3.734 -5.781 14.739 Atomic orbital electron populations 1.23573 0.74644 1.05770 1.02590 1.86514 1.25198 1.32602 1.83692 1.23710 0.91925 0.81365 0.71180 1.90634 1.67759 1.37089 1.46745 1.21764 0.87075 1.00285 1.07227 1.21596 0.82108 0.94415 1.03050 1.43229 1.04144 1.63069 1.04646 1.19284 1.14158 1.14187 1.01987 0.88410 1.25956 1.01270 0.92761 0.96629 1.69926 1.29756 1.05421 1.44056 0.85517 0.79150 0.77711 0.79065 1.21072 1.21470 1.17602 1.17143 0.86293 0.82710 0.81450 1.90658 1.15265 1.54595 1.84620 1.21832 0.97942 0.94050 0.99466 1.21748 1.01336 1.02756 0.91386 1.20589 1.03769 0.97992 0.95911 1.19358 0.76517 0.80247 0.82864 1.90833 1.54204 1.25584 1.69943 1.86625 1.53365 1.53842 1.32672 1.23704 1.02482 1.01366 0.79001 1.73531 1.19205 1.18411 0.95102 1.46250 1.25619 1.20477 1.12186 1.22673 1.04685 0.87997 0.91029 0.84921 0.91615 0.92162 0.87525 0.85643 0.89950 0.91173 0.92430 0.81015 0.91249 0.84559 0.91411 0.87808 0.89177 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.36 -9.21 10.57 -51.43 -0.54 -9.76 16 3 C 0.47 14.02 7.96 71.23 0.57 14.58 16 4 O -0.53 -17.86 15.67 21.96 0.34 -17.51 16 5 C -0.12 -3.82 6.08 29.85 0.18 -3.64 16 6 C 0.11 4.09 4.02 86.38 0.35 4.43 16 7 N -0.43 -19.47 2.50 -639.63 -1.60 -21.06 16 8 C -0.37 -18.17 9.06 84.11 0.76 -17.41 16 9 H 0.10 4.46 7.96 -2.91 -0.02 4.44 16 10 C 0.04 2.21 4.11 84.96 0.35 2.56 16 11 N -0.86 -46.51 12.54 21.68 0.27 -46.24 16 12 Si 0.96 41.93 29.63 68.60 2.03 43.97 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 15 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 16 C 0.54 26.06 6.41 86.56 0.55 26.62 16 17 O -0.57 -32.87 15.38 -4.25 -0.07 -32.94 16 18 C -0.01 -0.28 5.36 40.42 0.22 -0.06 16 19 C -0.14 -5.58 10.75 22.67 0.24 -5.34 16 20 C -0.03 -1.00 7.13 42.26 0.30 -0.70 16 21 C 0.57 18.65 7.97 70.30 0.56 19.22 16 22 O -0.52 -18.28 16.70 19.88 0.33 -17.94 16 23 O -0.35 -9.62 10.57 -56.24 -0.59 -10.22 16 24 C 0.03 0.48 10.56 113.37 1.20 1.67 16 25 N -0.22 -7.93 11.97 -48.50 -0.58 -8.51 16 26 N -0.25 -9.22 3.15 -357.03 -1.13 -10.35 16 27 C 0.07 2.30 10.07 127.77 1.29 3.59 16 28 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16 31 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.13 3.54 8.14 -2.39 -0.02 3.52 16 33 H 0.08 3.02 8.10 -2.39 -0.02 3.00 16 34 H 0.07 2.52 3.41 -2.39 -0.01 2.51 16 35 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.17 6.30 8.06 -2.91 -0.02 6.28 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.10 3.02 6.23 -2.39 -0.01 3.00 16 41 H 0.09 3.24 8.01 -2.39 -0.02 3.22 16 42 H 0.13 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -71.21 373.39 7.31 -63.90 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.07 Total: 19.46 kcal Atomic # 6 Polarization: 39.44 SS G_CDS: 7.76 Total: 47.20 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -3.03 Total: -86.16 kcal Atomic # 8 Polarization: -87.84 SS G_CDS: -0.53 Total: -88.36 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.97 kcal Total: -71.21 7.31 -63.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438604640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.944 kcal (2) G-P(sol) polarization free energy of solvation -71.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds