Wall clock time and date at job start Tue Mar 31 2020 22:43:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86801 * 119.99838 * 2 1
4 4 H 1.48499 * 109.46798 * 269.99488 * 3 2 1
5 5 H 1.48493 * 109.47330 * 29.99406 * 3 2 1
6 6 H 1.48496 * 109.47102 * 149.99828 * 3 2 1
7 7 C 1.38701 * 120.00173 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99669 * 359.97438 * 7 2 1
9 9 O 1.34812 * 119.99880 * 180.02562 * 7 2 1
10 10 C 1.35518 * 116.99826 * 174.61213 * 9 7 2
11 11 C 1.38834 * 120.16415 * 354.17803 * 10 9 7
12 12 C 1.38024 * 120.07745 * 180.25448 * 11 10 9
13 13 C 1.38570 * 120.39816 * 0.04248 * 12 11 10
14 14 C 1.37838 * 120.32716 * 359.95949 * 13 12 11
15 15 C 1.39669 * 119.91405 * 0.02562 * 14 13 12
16 16 C 1.47536 * 120.19338 * 179.97438 * 15 14 13
17 17 O 1.21593 * 120.00049 * 214.17735 * 16 15 14
18 18 N 1.34772 * 120.00132 * 34.18287 * 16 15 14
19 19 C 1.47225 * 121.33979 * 186.68721 * 18 16 15
20 20 C 1.52792 * 107.89643 * 115.73918 * 19 18 16
21 21 C 1.50611 * 110.85947 * 47.50842 * 20 19 18
22 22 C 1.38897 * 117.57624 * 159.92892 * 21 20 19
23 23 C 1.38402 * 120.54447 * 179.51818 * 22 21 20
24 24 O 1.35904 * 120.14301 * 179.97438 * 23 22 21
25 25 C 1.38759 * 119.70293 * 359.95375 * 23 22 21
26 26 C 1.37849 * 119.66375 * 0.23023 * 25 23 22
27 27 C 1.37716 * 122.85564 * 339.83832 * 21 20 19
28 28 C 1.46683 * 121.33880 * 6.40414 * 18 16 15
29 29 H 0.97003 * 120.00312 * 0.02562 * 1 2 3
30 30 H 1.08003 * 119.95968 * 0.27788 * 11 10 9
31 31 H 1.07993 * 119.80260 * 180.02562 * 12 11 10
32 32 H 1.08002 * 119.84311 * 179.97438 * 13 12 11
33 33 H 1.07990 * 120.04009 * 180.02562 * 14 13 12
34 34 H 1.08995 * 109.78166 * 235.33785 * 19 18 16
35 35 H 1.09005 * 109.77688 * 356.14654 * 19 18 16
36 36 H 1.09007 * 109.19762 * 167.86281 * 20 19 18
37 37 H 1.08997 * 109.20605 * 287.15142 * 20 19 18
38 38 H 1.08005 * 119.72639 * 359.54008 * 22 21 20
39 39 H 0.96694 * 113.99767 * 90.00383 * 24 23 22
40 40 H 1.08000 * 120.16632 * 180.20668 * 25 23 22
41 41 H 1.07994 * 119.71219 * 180.02562 * 26 25 23
42 42 H 1.09008 * 109.43163 * 344.48636 * 28 18 16
43 43 H 1.09002 * 109.43533 * 104.34857 * 28 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4403 0.7001
7 6 2.0087 -1.2012 0.0005
8 1 1.4687 -2.1365 0.0014
9 8 3.3568 -1.2011 0.0011
10 6 3.9720 -2.4032 0.1149
11 6 3.2247 -3.5503 0.3454
12 6 3.8536 -4.7730 0.4663
13 6 5.2321 -4.8659 0.3600
14 6 5.9902 -3.7377 0.1314
15 6 5.3676 -2.4937 0.0065
16 6 6.1731 -1.2820 -0.2377
17 8 5.8297 -0.2174 0.2388
18 7 7.2896 -1.3551 -0.9890
19 6 8.1929 -0.2014 -1.1326
20 6 9.5355 -0.5756 -0.5066
21 6 9.9877 -1.9325 -0.9784
22 6 11.3375 -2.2378 -0.8595
23 6 11.8181 -3.4708 -1.2647
24 8 13.1405 -3.7606 -1.1451
25 6 10.9438 -4.4097 -1.7931
26 6 9.6052 -4.1035 -1.9139
27 6 9.1248 -2.8639 -1.5119
28 6 7.6568 -2.5892 -1.6917
29 1 -0.4851 0.8400 -0.0004
30 1 2.1499 -3.4859 0.4298
31 1 3.2679 -5.6625 0.6451
32 1 5.7149 -5.8272 0.4565
33 1 7.0641 -3.8156 0.0489
34 1 8.3303 0.0303 -2.1887
35 1 7.7732 0.6620 -0.6164
36 1 10.2814 0.1683 -0.7868
37 1 9.4338 -0.5890 0.5786
38 1 12.0175 -1.5070 -0.4471
39 1 13.3793 -4.1667 -0.3007
40 1 11.3102 -5.3754 -2.1086
41 1 8.9239 -4.8338 -2.3247
42 1 7.0805 -3.4217 -1.2878
43 1 7.4393 -2.4801 -2.7542
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001457331046.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:43:20
Heat of formation + Delta-G solvation = -26.417437 kcal
Electronic energy + Delta-G solvation = -29052.194501 eV
Core-core repulsion = 25029.155338 eV
Total energy + Delta-G solvation = -4023.039163 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.130 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.78708 -39.73006 -38.60372 -37.38024 -36.66905 -35.24508 -33.36732 -32.49367
-30.90114 -30.59638 -29.31456 -29.19557 -25.66126 -25.38456 -24.17515 -22.81301
-22.65230 -21.53697 -20.85917 -19.21089 -18.13842 -18.05923 -17.43588 -16.74895
-16.54635 -15.83761 -15.48524 -15.35917 -15.12516 -14.72762 -14.52151 -14.28131
-14.10692 -13.95690 -13.74273 -13.37905 -13.33040 -12.97895 -12.78123 -12.55175
-12.37849 -12.23458 -12.14056 -11.75223 -11.64416 -11.39267 -11.25216 -11.17758
-10.84316 -10.63696 -10.54308 -10.12524 -9.68607 -9.20222 -9.03785 -8.93362
-8.67224 -8.54784 -8.24307 -7.54111 -6.50607 -4.16688 0.96531 1.08070
1.54568 2.10557 3.17085 3.27359 3.31334 3.31670 3.38455 3.60627
3.92575 4.29870 4.35946 4.47665 4.56465 4.66633 4.67918 4.88305
5.00480 5.03031 5.06421 5.17935 5.25944 5.31876 5.36249 5.43970
5.57787 5.60269 5.67347 5.74228 5.78434 5.89413 5.94717 6.00242
6.08074 6.17350 6.30243 6.34575 6.47495 6.57670 6.66771 6.79258
6.95894 7.10026 7.36362 7.42115 7.60865 7.74154 7.90865 8.68883
8.84461 9.45717 10.54781
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.017362 B = 0.003340 C = 0.002883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1612.297849 B = 8381.981858 C = 9708.870061
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.869 5.869
2 C 0.072 3.928
3 Si 0.894 3.106
4 H -0.274 1.274
5 H -0.283 1.283
6 H -0.238 1.238
7 C -0.396 4.396
8 H 0.109 0.891
9 O -0.178 6.178
10 C 0.201 3.799
11 C -0.222 4.222
12 C -0.053 4.053
13 C -0.217 4.217
14 C -0.057 4.057
15 C -0.222 4.222
16 C 0.576 3.424
17 O -0.518 6.518
18 N -0.619 5.619
19 C 0.114 3.886
20 C -0.098 4.098
21 C -0.050 4.050
22 C -0.146 4.146
23 C 0.100 3.900
24 O -0.501 6.501
25 C -0.146 4.146
26 C -0.097 4.097
27 C -0.097 4.097
28 C 0.117 3.883
29 H 0.282 0.718
30 H 0.139 0.861
31 H 0.115 0.885
32 H 0.113 0.887
33 H 0.130 0.870
34 H 0.070 0.930
35 H 0.099 0.901
36 H 0.085 0.915
37 H 0.083 0.917
38 H 0.126 0.874
39 H 0.389 0.611
40 H 0.129 0.871
41 H 0.131 0.869
42 H 0.130 0.870
43 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.043 -8.959 -2.462 23.003
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.505 5.505
2 C -0.133 4.133
3 Si 0.719 3.281
4 H -0.199 1.199
5 H -0.209 1.209
6 H -0.161 1.161
7 C -0.471 4.471
8 H 0.126 0.874
9 O -0.079 6.079
10 C 0.144 3.856
11 C -0.241 4.241
12 C -0.071 4.071
13 C -0.236 4.236
14 C -0.075 4.075
15 C -0.227 4.227
16 C 0.367 3.633
17 O -0.393 6.393
18 N -0.354 5.354
19 C -0.009 4.009
20 C -0.136 4.136
21 C -0.050 4.050
22 C -0.164 4.164
23 C 0.056 3.944
24 O -0.311 6.311
25 C -0.164 4.164
26 C -0.116 4.116
27 C -0.098 4.098
28 C -0.005 4.005
29 H 0.092 0.908
30 H 0.157 0.843
31 H 0.133 0.867
32 H 0.131 0.869
33 H 0.147 0.853
34 H 0.088 0.912
35 H 0.117 0.883
36 H 0.103 0.897
37 H 0.101 0.899
38 H 0.144 0.856
39 H 0.244 0.756
40 H 0.146 0.854
41 H 0.149 0.851
42 H 0.147 0.853
43 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 20.698 -7.704 -2.771 22.258
hybrid contribution 0.274 0.250 0.368 0.522
sum 20.972 -7.454 -2.403 22.386
Atomic orbital electron populations
1.69629 1.05753 1.28952 1.46159 1.24481 0.94972 0.99194 0.94701
0.86285 0.81572 0.80747 0.79525 1.19917 1.20920 1.16092 1.20876
0.76853 0.96781 1.52552 0.87389 1.83705 1.22438 1.25112 1.76612
1.18958 0.90022 0.85920 0.90701 1.21296 1.01436 0.92028 1.09374
1.20971 0.94370 0.96666 0.95104 1.20574 0.94011 0.97663 1.11310
1.20985 0.98768 0.91139 0.96621 1.18750 0.91231 0.93357 1.19345
1.18169 0.79070 0.88751 0.77298 1.90815 1.68451 1.30044 1.49959
1.47827 1.24426 1.12544 1.50643 1.21484 0.88258 0.90159 1.01003
1.20889 0.97771 0.93359 1.01568 1.19415 0.92188 0.95866 0.97572
1.21425 0.95222 0.97437 1.02342 1.18356 0.83072 0.93239 0.99711
1.84824 1.21147 1.83371 1.41766 1.21309 0.93176 0.99687 1.02275
1.20952 0.95201 0.96056 0.99359 1.19882 0.95932 0.94082 0.99919
1.21211 0.91508 0.89787 0.98027 0.90788 0.84334 0.86737 0.86852
0.85292 0.91187 0.88259 0.89666 0.89895 0.85574 0.75563 0.85352
0.85108 0.85299 0.90473
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.01 13.96 55.48 0.77 -24.23 16
2 C 0.07 2.05 5.49 -17.52 -0.10 1.95 16
3 Si 0.89 22.73 28.62 -169.99 -4.86 17.86 16
4 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16
5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
6 H -0.24 -6.43 7.11 56.52 0.40 -6.03 16
7 C -0.40 -11.15 9.90 30.90 0.31 -10.84 16
8 H 0.11 3.03 5.53 -52.49 -0.29 2.74 16
9 O -0.18 -4.81 7.20 -17.25 -0.12 -4.94 16
10 C 0.20 4.65 6.63 -38.60 -0.26 4.39 16
11 C -0.22 -4.56 9.13 -39.44 -0.36 -4.92 16
12 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16
13 C -0.22 -3.21 10.02 -39.61 -0.40 -3.61 16
14 C -0.06 -0.90 7.54 -39.19 -0.30 -1.19 16
15 C -0.22 -4.45 5.50 -104.81 -0.58 -5.02 16
16 C 0.58 11.71 7.28 -12.47 -0.09 11.61 16
17 O -0.52 -12.68 15.40 -12.78 -0.20 -12.88 16
18 N -0.62 -9.68 2.94 -175.84 -0.52 -10.20 16
19 C 0.11 1.51 6.44 -3.75 -0.02 1.48 16
20 C -0.10 -1.05 5.86 -28.03 -0.16 -1.22 16
21 C -0.05 -0.55 5.76 -104.61 -0.60 -1.15 16
22 C -0.15 -1.46 9.53 -39.28 -0.37 -1.83 16
23 C 0.10 0.97 6.70 -39.33 -0.26 0.71 16
24 O -0.50 -4.24 13.51 -19.44 -0.26 -4.50 16
25 C -0.15 -1.32 10.00 -39.53 -0.40 -1.72 16
26 C -0.10 -0.91 9.61 -39.48 -0.38 -1.29 16
27 C -0.10 -1.07 5.75 -104.71 -0.60 -1.67 16
28 C 0.12 1.45 5.36 -5.23 -0.03 1.43 16
29 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16
30 H 0.14 2.96 5.71 -52.48 -0.30 2.66 16
31 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16
32 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16
33 H 0.13 1.69 5.73 -52.49 -0.30 1.39 16
34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
35 H 0.10 1.47 7.08 -51.93 -0.37 1.10 16
36 H 0.08 0.73 8.10 -51.92 -0.42 0.31 16
37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
38 H 0.13 1.09 8.05 -52.48 -0.42 0.66 16
39 H 0.39 1.44 9.06 45.56 0.41 1.85 16
40 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16
41 H 0.13 0.95 8.05 -52.49 -0.42 0.53 16
42 H 0.13 1.59 3.21 -51.94 -0.17 1.42 16
43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
LS Contribution 356.91 15.07 5.38 5.38
Total: -1.00 -34.08 356.91 -8.76 -42.84
By element:
Atomic # 1 Polarization: 8.77 SS G_CDS: -3.95 Total: 4.82 kcal
Atomic # 6 Polarization: -9.16 SS G_CDS: -5.00 Total: -14.16 kcal
Atomic # 7 Polarization: -34.69 SS G_CDS: 0.26 Total: -34.43 kcal
Atomic # 8 Polarization: -21.73 SS G_CDS: -0.58 Total: -22.31 kcal
Atomic # 14 Polarization: 22.73 SS G_CDS: -4.86 Total: 17.86 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -34.08 -8.76 -42.84 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001457331046.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.419 kcal
(2) G-P(sol) polarization free energy of solvation -34.079 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.661 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.417 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds