Wall clock time and date at job start Tue Mar 31 2020 22:43:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86801 * 119.99838 * 2 1
4 4 H 1.48499 * 109.46798 * 269.99488 * 3 2 1
5 5 H 1.48493 * 109.47330 * 29.99406 * 3 2 1
6 6 H 1.48496 * 109.47102 * 149.99828 * 3 2 1
7 7 C 1.38701 * 120.00173 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99669 * 359.97438 * 7 2 1
9 9 O 1.34812 * 119.99880 * 180.02562 * 7 2 1
10 10 C 1.35518 * 116.99826 * 174.61213 * 9 7 2
11 11 C 1.38834 * 120.16415 * 354.17803 * 10 9 7
12 12 C 1.38024 * 120.07745 * 180.25448 * 11 10 9
13 13 C 1.38570 * 120.39816 * 0.04248 * 12 11 10
14 14 C 1.37838 * 120.32716 * 359.95949 * 13 12 11
15 15 C 1.39669 * 119.91405 * 0.02562 * 14 13 12
16 16 C 1.47536 * 120.19338 * 179.97438 * 15 14 13
17 17 O 1.21593 * 120.00049 * 214.17735 * 16 15 14
18 18 N 1.34772 * 120.00132 * 34.18287 * 16 15 14
19 19 C 1.47225 * 121.33979 * 186.68721 * 18 16 15
20 20 C 1.52792 * 107.89643 * 115.73918 * 19 18 16
21 21 C 1.50611 * 110.85947 * 47.50842 * 20 19 18
22 22 C 1.38897 * 117.57624 * 159.92892 * 21 20 19
23 23 C 1.38402 * 120.54447 * 179.51818 * 22 21 20
24 24 O 1.35904 * 120.14301 * 179.97438 * 23 22 21
25 25 C 1.38759 * 119.70293 * 359.95375 * 23 22 21
26 26 C 1.37849 * 119.66375 * 0.23023 * 25 23 22
27 27 C 1.37716 * 122.85564 * 339.83832 * 21 20 19
28 28 C 1.46683 * 121.33880 * 6.40414 * 18 16 15
29 29 H 0.97003 * 120.00312 * 0.02562 * 1 2 3
30 30 H 1.08003 * 119.95968 * 0.27788 * 11 10 9
31 31 H 1.07993 * 119.80260 * 180.02562 * 12 11 10
32 32 H 1.08002 * 119.84311 * 179.97438 * 13 12 11
33 33 H 1.07990 * 120.04009 * 180.02562 * 14 13 12
34 34 H 1.08995 * 109.78166 * 235.33785 * 19 18 16
35 35 H 1.09005 * 109.77688 * 356.14654 * 19 18 16
36 36 H 1.09007 * 109.19762 * 167.86281 * 20 19 18
37 37 H 1.08997 * 109.20605 * 287.15142 * 20 19 18
38 38 H 1.08005 * 119.72639 * 359.54008 * 22 21 20
39 39 H 0.96694 * 113.99767 * 90.00383 * 24 23 22
40 40 H 1.08000 * 120.16632 * 180.20668 * 25 23 22
41 41 H 1.07994 * 119.71219 * 180.02562 * 26 25 23
42 42 H 1.09008 * 109.43163 * 344.48636 * 28 18 16
43 43 H 1.09002 * 109.43533 * 104.34857 * 28 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4403 0.7001
7 6 2.0087 -1.2012 0.0005
8 1 1.4687 -2.1365 0.0014
9 8 3.3568 -1.2011 0.0011
10 6 3.9720 -2.4032 0.1149
11 6 3.2247 -3.5503 0.3454
12 6 3.8536 -4.7730 0.4663
13 6 5.2321 -4.8659 0.3600
14 6 5.9902 -3.7377 0.1314
15 6 5.3676 -2.4937 0.0065
16 6 6.1731 -1.2820 -0.2377
17 8 5.8297 -0.2174 0.2388
18 7 7.2896 -1.3551 -0.9890
19 6 8.1929 -0.2014 -1.1326
20 6 9.5355 -0.5756 -0.5066
21 6 9.9877 -1.9325 -0.9784
22 6 11.3375 -2.2378 -0.8595
23 6 11.8181 -3.4708 -1.2647
24 8 13.1405 -3.7606 -1.1451
25 6 10.9438 -4.4097 -1.7931
26 6 9.6052 -4.1035 -1.9139
27 6 9.1248 -2.8639 -1.5119
28 6 7.6568 -2.5892 -1.6917
29 1 -0.4851 0.8400 -0.0004
30 1 2.1499 -3.4859 0.4298
31 1 3.2679 -5.6625 0.6451
32 1 5.7149 -5.8272 0.4565
33 1 7.0641 -3.8156 0.0489
34 1 8.3303 0.0303 -2.1887
35 1 7.7732 0.6620 -0.6164
36 1 10.2814 0.1683 -0.7868
37 1 9.4338 -0.5890 0.5786
38 1 12.0175 -1.5070 -0.4471
39 1 13.3793 -4.1667 -0.3007
40 1 11.3102 -5.3754 -2.1086
41 1 8.9239 -4.8338 -2.3247
42 1 7.0805 -3.4217 -1.2878
43 1 7.4393 -2.4801 -2.7542
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001457331046.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:43:19
Heat of formation + Delta-G solvation = -48.860099 kcal
Electronic energy + Delta-G solvation = -29053.167687 eV
Core-core repulsion = 25029.155338 eV
Total energy + Delta-G solvation = -4024.012350 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.130 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.94817 -40.94021 -39.97035 -38.38129 -38.26310 -36.33253 -34.53757 -34.34300
-32.19318 -31.52226 -30.83903 -30.18804 -27.36290 -26.68195 -25.22815 -24.10354
-23.53038 -22.90211 -21.97931 -20.43633 -19.95945 -19.03137 -18.76765 -18.15300
-17.62837 -17.07065 -16.58440 -16.33083 -16.24884 -16.16355 -15.98130 -15.66666
-15.49903 -15.32615 -15.08151 -14.66144 -14.42237 -14.28096 -14.20286 -13.96307
-13.66710 -13.51285 -13.11759 -13.08683 -12.85367 -12.67737 -12.59813 -12.52971
-12.14761 -12.08102 -11.92485 -11.56550 -11.31128 -10.98084 -10.78946 -9.97575
-9.81455 -9.64169 -9.29377 -9.16881 -8.59007 -6.28326 0.05144 0.24411
0.37406 0.60681 1.23115 1.26394 1.54518 1.81170 1.95957 2.26107
2.61442 2.70766 2.98723 3.06678 3.29296 3.53895 3.68414 3.81939
3.88910 3.97123 4.13861 4.17028 4.24902 4.31500 4.37758 4.44221
4.49359 4.54324 4.61607 4.72255 4.75302 4.80360 4.89090 4.98911
5.03388 5.11814 5.27857 5.31500 5.44452 5.48199 5.49984 5.57343
5.62224 5.67706 5.82481 5.89418 6.13003 6.35694 6.77483 6.89067
7.19230 7.55565 8.51644
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.017362 B = 0.003340 C = 0.002883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1612.297849 B = 8381.981858 C = 9708.870061
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.910 5.910
2 C 0.027 3.973
3 Si 0.949 3.051
4 H -0.271 1.271
5 H -0.264 1.264
6 H -0.270 1.270
7 C -0.400 4.400
8 H 0.094 0.906
9 O -0.222 6.222
10 C 0.162 3.838
11 C -0.243 4.243
12 C -0.042 4.042
13 C -0.180 4.180
14 C -0.047 4.047
15 C -0.228 4.228
16 C 0.566 3.434
17 O -0.574 6.574
18 N -0.611 5.611
19 C 0.107 3.893
20 C -0.089 4.089
21 C -0.062 4.062
22 C -0.153 4.153
23 C 0.101 3.899
24 O -0.511 6.511
25 C -0.147 4.147
26 C -0.091 4.091
27 C -0.111 4.111
28 C 0.116 3.884
29 H 0.286 0.714
30 H 0.117 0.883
31 H 0.154 0.846
32 H 0.170 0.830
33 H 0.166 0.834
34 H 0.086 0.914
35 H 0.075 0.925
36 H 0.108 0.892
37 H 0.073 0.927
38 H 0.135 0.865
39 H 0.410 0.590
40 H 0.149 0.851
41 H 0.155 0.845
42 H 0.133 0.867
43 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.011 -12.628 -3.039 28.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.550 5.550
2 C -0.174 4.174
3 Si 0.773 3.227
4 H -0.197 1.197
5 H -0.188 1.188
6 H -0.195 1.195
7 C -0.476 4.476
8 H 0.111 0.889
9 O -0.127 6.127
10 C 0.109 3.891
11 C -0.262 4.262
12 C -0.061 4.061
13 C -0.198 4.198
14 C -0.065 4.065
15 C -0.232 4.232
16 C 0.357 3.643
17 O -0.454 6.454
18 N -0.344 5.344
19 C -0.015 4.015
20 C -0.126 4.126
21 C -0.062 4.062
22 C -0.172 4.172
23 C 0.057 3.943
24 O -0.324 6.324
25 C -0.165 4.165
26 C -0.109 4.109
27 C -0.112 4.112
28 C -0.005 4.005
29 H 0.096 0.904
30 H 0.135 0.865
31 H 0.172 0.828
32 H 0.188 0.812
33 H 0.183 0.817
34 H 0.105 0.895
35 H 0.093 0.907
36 H 0.127 0.873
37 H 0.092 0.908
38 H 0.153 0.847
39 H 0.269 0.731
40 H 0.167 0.833
41 H 0.173 0.827
42 H 0.150 0.850
43 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 24.742 -11.441 -3.364 27.466
hybrid contribution -0.519 0.976 0.529 1.225
sum 24.223 -10.466 -2.835 26.539
Atomic orbital electron populations
1.69673 1.06349 1.29552 1.49455 1.25015 0.95630 1.01286 0.95436
0.85506 0.79121 0.78897 0.79180 1.19653 1.18817 1.19478 1.20842
0.78040 0.96327 1.52385 0.88879 1.83682 1.21235 1.27227 1.80551
1.19643 0.91663 0.85757 0.92018 1.21352 1.00663 0.93320 1.10881
1.21450 0.95750 0.96029 0.92824 1.21256 0.93061 0.99445 1.06064
1.21429 1.00665 0.89540 0.94842 1.19134 0.90158 0.95216 1.18739
1.18402 0.80108 0.88185 0.77561 1.90788 1.70179 1.31837 1.52591
1.47868 1.23077 1.14460 1.48978 1.21663 0.89005 0.88836 1.01988
1.20791 0.96500 0.94577 1.00744 1.19436 0.92838 0.95666 0.98293
1.21514 0.94887 0.98112 1.02657 1.18507 0.83600 0.93176 0.99065
1.84772 1.20502 1.83651 1.43487 1.21564 0.92953 1.00407 1.01609
1.21163 0.95805 0.95544 0.98409 1.19772 0.94648 0.95187 1.01596
1.21359 0.92890 0.88118 0.98101 0.90422 0.86513 0.82814 0.81244
0.81707 0.89543 0.90667 0.87333 0.90813 0.84670 0.73102 0.83333
0.82715 0.85022 0.89562
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.32 13.96 21.62 0.30 -55.02 16
2 C 0.03 1.61 5.49 84.85 0.47 2.08 16
3 Si 0.95 50.24 28.62 68.60 1.96 52.20 16
4 H -0.27 -13.94 7.11 99.48 0.71 -13.24 16
5 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16
6 H -0.27 -15.58 7.11 99.48 0.71 -14.88 16
7 C -0.40 -24.20 9.90 67.93 0.67 -23.53 16
8 H 0.09 5.67 5.53 -2.91 -0.02 5.66 16
9 O -0.22 -12.87 7.20 -2.74 -0.02 -12.89 16
10 C 0.16 7.75 6.63 22.91 0.15 7.90 16
11 C -0.24 -10.09 9.13 22.36 0.20 -9.89 16
12 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16
13 C -0.18 -4.27 10.02 22.25 0.22 -4.04 16
14 C -0.05 -1.30 7.54 22.52 0.17 -1.13 16
15 C -0.23 -9.06 5.50 -19.99 -0.11 -9.17 16
16 C 0.57 23.57 7.28 86.70 0.63 24.20 16
17 O -0.57 -29.93 15.40 13.26 0.20 -29.73 16
18 N -0.61 -18.75 2.94 -828.49 -2.43 -21.19 16
19 C 0.11 2.83 6.44 86.17 0.56 3.39 16
20 C -0.09 -1.78 5.86 29.75 0.17 -1.61 16
21 C -0.06 -1.19 5.76 -19.86 -0.11 -1.31 16
22 C -0.15 -2.58 9.53 22.47 0.21 -2.37 16
23 C 0.10 1.57 6.70 22.43 0.15 1.72 16
24 O -0.51 -6.74 13.51 -92.47 -1.25 -7.99 16
25 C -0.15 -1.99 10.00 22.30 0.22 -1.76 16
26 C -0.09 -1.27 9.61 22.33 0.21 -1.05 16
27 C -0.11 -2.06 5.75 -19.92 -0.11 -2.18 16
28 C 0.12 2.57 5.36 85.51 0.46 3.03 16
29 H 0.29 16.01 8.31 -92.71 -0.77 15.24 16
30 H 0.12 5.31 5.71 -2.91 -0.02 5.30 16
31 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16
32 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16
33 H 0.17 3.44 5.73 -2.92 -0.02 3.42 16
34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16
35 H 0.07 2.36 7.08 -2.38 -0.02 2.35 16
36 H 0.11 1.65 8.10 -2.38 -0.02 1.63 16
37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
38 H 0.14 1.95 8.05 -2.91 -0.02 1.92 16
39 H 0.41 1.49 9.06 -74.06 -0.67 0.82 16
40 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16
41 H 0.16 1.36 8.05 -2.91 -0.02 1.34 16
42 H 0.13 2.72 3.21 -2.40 -0.01 2.71 16
43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16
Total: -1.00 -82.39 356.91 3.57 -78.82
By element:
Atomic # 1 Polarization: 12.11 SS G_CDS: 0.41 Total: 12.52 kcal
Atomic # 6 Polarization: -21.12 SS G_CDS: 4.39 Total: -16.73 kcal
Atomic # 7 Polarization: -74.07 SS G_CDS: -2.13 Total: -76.21 kcal
Atomic # 8 Polarization: -49.54 SS G_CDS: -1.06 Total: -50.61 kcal
Atomic # 14 Polarization: 50.24 SS G_CDS: 1.96 Total: 52.20 kcal
Total: -82.39 3.57 -78.82 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001457331046.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.962 kcal
(2) G-P(sol) polarization free energy of solvation -82.391 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.429 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.822 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.860 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds