Wall clock time and date at job start Tue Mar 31 2020 22:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86810 * 119.99924 * 2 1 4 4 H 1.48494 * 109.46746 * 269.99748 * 3 2 1 5 5 H 1.48497 * 109.47108 * 29.99862 * 3 2 1 6 6 H 1.48498 * 109.46812 * 149.99716 * 3 2 1 7 7 C 1.39943 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99730 * 195.40821 * 7 2 1 9 9 C 1.41388 * 120.00154 * 15.40659 * 7 2 1 10 10 C 1.40438 * 119.97016 * 25.72608 * 9 7 2 11 11 C 1.37594 * 119.54642 * 180.30688 * 10 9 7 12 12 C 1.38379 * 119.98877 * 0.17683 * 11 10 9 13 13 C 1.39244 * 121.05078 * 359.87124 * 12 11 10 14 14 C 1.37030 * 119.99967 * 359.65230 * 13 12 11 15 15 C 1.50573 * 123.05611 * 180.98770 * 14 13 12 16 16 C 1.52801 * 110.83677 * 340.10560 * 15 14 13 17 17 N 1.47240 * 107.83911 * 47.35232 * 16 15 14 18 18 C 1.34773 * 121.35554 * 115.88778 * 17 16 15 19 19 O 1.21622 * 119.99713 * 359.97438 * 18 17 16 20 20 C 1.47236 * 120.00566 * 180.02562 * 18 17 16 21 21 C 1.40251 * 120.23709 * 89.72068 * 20 18 17 22 22 O 1.35654 * 120.12142 * 359.97438 * 21 20 18 23 23 C 1.38548 * 119.75401 * 179.72564 * 21 20 18 24 24 C 1.38243 * 120.23955 * 0.55287 * 23 21 20 25 25 C 1.38253 * 120.48294 * 359.72359 * 24 23 21 26 26 C 1.38541 * 120.23284 * 359.97438 * 25 24 23 27 27 O 1.35666 * 120.11906 * 179.97438 * 26 25 24 28 28 C 1.46671 * 117.29429 * 295.86056 * 17 16 15 29 29 H 0.97007 * 120.00177 * 0.02562 * 1 2 3 30 30 H 1.08008 * 120.22612 * 0.29229 * 10 9 7 31 31 H 1.08001 * 120.00754 * 180.14592 * 11 10 9 32 32 H 1.08001 * 119.47388 * 179.84996 * 12 11 10 33 33 H 1.09000 * 109.19808 * 219.76863 * 15 14 13 34 34 H 1.08998 * 109.20223 * 100.43677 * 15 14 13 35 35 H 1.08997 * 109.78282 * 166.94190 * 16 15 14 36 36 H 1.09001 * 109.78069 * 287.77167 * 16 15 14 37 37 H 0.96701 * 114.00331 * 90.00108 * 22 21 20 38 38 H 1.08002 * 119.88311 * 180.27409 * 23 21 20 39 39 H 1.08000 * 119.76081 * 179.74276 * 24 23 21 40 40 H 1.07995 * 119.88083 * 179.97438 * 25 24 23 41 41 H 0.96698 * 113.99678 * 270.02291 * 27 26 25 42 42 H 1.08996 * 109.43196 * 164.36459 * 28 17 16 43 43 H 1.08999 * 109.43315 * 284.26901 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5397 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0589 -1.2286 0.2491 9 6 1.3391 -2.4146 -0.3242 10 6 0.1967 -2.3836 -1.1403 11 6 -0.4511 -3.5585 -1.4457 12 6 0.0221 -4.7592 -0.9464 13 6 1.1531 -4.8039 -0.1353 14 6 1.8203 -3.6478 0.1743 15 6 3.0615 -3.6188 1.0264 16 6 3.1754 -4.8915 1.8643 17 7 2.9300 -6.0398 0.9760 18 6 3.8912 -6.9508 0.7257 19 8 4.9883 -6.8334 1.2374 20 6 3.6136 -8.0875 -0.1679 21 6 3.8484 -7.9761 -1.5462 22 8 4.3324 -6.8190 -2.0629 23 6 3.5890 -9.0539 -2.3772 24 6 3.0898 -10.2321 -1.8539 25 6 2.8493 -10.3508 -0.4977 26 6 3.1074 -9.2876 0.3522 27 8 2.8700 -9.4065 1.6827 28 6 1.5968 -6.1524 0.3750 29 1 -0.4851 0.8401 -0.0004 30 1 -0.1712 -1.4440 -1.5255 31 1 -1.3290 -3.5437 -2.0746 32 1 -0.4942 -5.6762 -1.1893 33 1 3.0205 -2.7551 1.6901 34 1 3.9367 -3.5344 0.3822 35 1 4.1752 -4.9630 2.2924 36 1 2.4320 -4.8761 2.6614 37 1 5.2980 -6.7765 -2.0959 38 1 3.7733 -8.9719 -3.4382 39 1 2.8865 -11.0661 -2.5094 40 1 2.4588 -11.2756 -0.0994 41 1 1.9776 -9.1450 1.9478 42 1 1.6311 -6.8601 -0.4533 43 1 0.8896 -6.5061 1.1251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457970977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:44 Heat of formation + Delta-G solvation = -92.178774 kcal Electronic energy + Delta-G solvation = -29537.700160 eV Core-core repulsion = 25511.809371 eV Total energy + Delta-G solvation = -4025.890789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.91446 -40.48864 -39.40364 -38.92329 -37.05990 -36.76574 -35.47845 -33.81905 -32.04899 -31.58126 -30.37720 -30.32328 -27.13584 -26.60369 -25.21752 -23.89287 -23.59710 -22.39348 -21.74466 -20.25024 -19.62693 -18.94875 -18.61213 -18.21735 -17.53797 -17.45387 -17.02139 -16.43607 -16.28832 -16.12077 -15.81980 -15.59241 -15.23198 -15.06085 -14.93869 -14.53580 -14.21708 -14.06201 -13.99216 -13.49157 -13.26529 -13.14554 -13.04814 -12.81940 -12.77304 -12.73131 -12.59263 -12.17537 -12.12751 -11.93887 -11.78534 -11.50021 -11.09527 -11.04886 -10.98132 -9.89859 -9.77145 -9.64424 -9.18061 -9.05830 -8.60553 -6.32322 -0.05783 0.11669 0.97458 1.06155 1.36733 1.40241 1.48455 1.51173 1.92547 2.19617 2.44127 2.73294 2.88829 3.35066 3.40867 3.66529 3.90915 4.05088 4.09089 4.13028 4.23086 4.36293 4.37784 4.42727 4.48601 4.60060 4.62879 4.71794 4.74731 4.86506 5.02422 5.11532 5.19059 5.19934 5.23746 5.31632 5.33907 5.36928 5.54250 5.64391 5.76273 5.98013 6.16628 6.17946 6.27710 6.44771 6.62951 6.68483 6.72581 6.96820 6.97005 7.06799 8.34772 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.003366 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.100728 B = 8315.434329 C = 8699.013670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.038 3.962 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.491 4.491 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.193 4.193 11 C -0.110 4.110 12 C -0.228 4.228 13 C -0.078 4.078 14 C -0.188 4.188 15 C -0.059 4.059 16 C 0.118 3.882 17 N -0.592 5.592 18 C 0.579 3.421 19 O -0.583 6.583 20 C -0.205 4.205 21 C 0.140 3.860 22 O -0.508 6.508 23 C -0.155 4.155 24 C -0.058 4.058 25 C -0.150 4.150 26 C 0.147 3.853 27 O -0.504 6.504 28 C 0.167 3.833 29 H 0.286 0.714 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.407 0.593 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.166 0.834 41 H 0.410 0.590 42 H 0.092 0.908 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 -18.224 -2.671 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.177 4.177 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.213 4.213 11 C -0.128 4.128 12 C -0.248 4.248 13 C -0.079 4.079 14 C -0.190 4.190 15 C -0.096 4.096 16 C -0.004 4.004 17 N -0.322 5.322 18 C 0.368 3.632 19 O -0.464 6.464 20 C -0.209 4.209 21 C 0.095 3.905 22 O -0.321 6.321 23 C -0.173 4.173 24 C -0.076 4.076 25 C -0.168 4.168 26 C 0.101 3.899 27 O -0.317 6.317 28 C 0.045 3.955 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.266 0.734 38 H 0.175 0.825 39 H 0.194 0.806 40 H 0.183 0.817 41 H 0.270 0.730 42 H 0.110 0.890 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.191 -18.034 -2.392 18.324 hybrid contribution 0.251 1.725 0.063 1.744 sum 2.442 -16.310 -2.329 16.655 Atomic orbital electron populations 1.69873 1.08782 1.30220 1.36259 1.26651 0.95446 1.04140 0.91468 0.85311 0.79179 0.76564 0.79346 1.19018 1.19222 1.18390 1.19782 0.97315 0.92013 1.42957 0.90803 1.17973 0.92157 0.92572 0.89502 1.21239 1.00157 0.97118 1.02759 1.20869 0.99016 0.93117 0.99812 1.20547 1.00269 0.97256 1.06721 1.19450 0.96199 0.93513 0.98711 1.19564 1.00651 0.93050 1.05694 1.20290 0.94908 0.97265 0.97167 1.21650 1.02604 0.83961 0.92164 1.48048 1.13028 1.24677 1.46434 1.18218 0.83196 0.81915 0.79823 1.90732 1.24454 1.77457 1.53762 1.20641 1.10894 0.95248 0.94145 1.18576 0.97229 0.86387 0.88349 1.84784 1.28123 1.35636 1.83573 1.21686 1.02457 0.91780 1.01365 1.21486 0.93801 0.97500 0.94795 1.21694 1.02414 0.99284 0.93400 1.18421 0.96755 0.90913 0.83824 1.84742 1.38914 1.88671 1.19365 1.20473 0.82263 0.94816 0.97959 0.90343 0.88341 0.87203 0.86052 0.91023 0.94261 0.89648 0.89561 0.73383 0.82521 0.80633 0.81668 0.72973 0.88958 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.22 10.88 21.83 0.24 -42.98 16 2 C 0.04 1.90 5.17 85.26 0.44 2.34 16 3 Si 0.97 38.87 29.59 68.60 2.03 40.90 16 4 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.49 -26.39 8.04 23.46 0.19 -26.20 16 8 H 0.07 3.88 6.84 -2.91 -0.02 3.86 16 9 C 0.08 4.30 5.58 -21.18 -0.12 4.18 16 10 C -0.19 -10.19 8.66 22.65 0.20 -10.00 16 11 C -0.11 -5.01 10.03 22.15 0.22 -4.79 16 12 C -0.23 -9.40 9.62 22.55 0.22 -9.19 16 13 C -0.08 -3.26 5.81 -19.86 -0.12 -3.38 16 14 C -0.19 -8.98 5.82 -19.40 -0.11 -9.09 16 15 C -0.06 -2.52 4.94 29.74 0.15 -2.37 16 16 C 0.12 4.31 6.44 86.17 0.56 4.87 16 17 N -0.59 -20.68 2.93 -828.04 -2.43 -23.11 16 18 C 0.58 20.76 6.22 86.61 0.54 21.30 16 19 O -0.58 -24.90 16.59 -4.10 -0.07 -24.97 16 20 C -0.21 -5.88 3.82 -19.93 -0.08 -5.96 16 21 C 0.14 3.63 6.46 22.83 0.15 3.78 16 22 O -0.51 -14.65 12.95 -89.69 -1.16 -15.81 16 23 C -0.15 -2.75 9.97 22.34 0.22 -2.53 16 24 C -0.06 -0.75 10.02 22.27 0.22 -0.52 16 25 C -0.15 -2.28 9.97 22.35 0.22 -2.06 16 26 C 0.15 3.32 6.72 22.83 0.15 3.48 16 27 O -0.50 -11.05 12.95 -89.83 -1.16 -12.21 16 28 C 0.17 5.42 6.07 85.65 0.52 5.94 16 29 H 0.29 13.61 8.30 -92.70 -0.77 12.84 16 30 H 0.10 5.49 6.15 -2.91 -0.02 5.47 16 31 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.12 4.09 8.05 -2.91 -0.02 4.07 16 33 H 0.07 3.15 7.04 -2.39 -0.02 3.14 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 3.12 7.07 -2.39 -0.02 3.11 16 36 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.41 8.67 9.06 -74.06 -0.67 8.00 16 38 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.41 5.38 9.06 -74.06 -0.67 4.71 16 42 H 0.09 2.79 6.36 -2.39 -0.02 2.78 16 43 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -73.79 361.18 0.76 -73.03 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.25 Total: 35.36 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.57 Total: -30.20 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -2.19 Total: -66.09 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -2.39 Total: -53.00 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -73.79 0.76 -73.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457970977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.152 kcal (2) G-P(sol) polarization free energy of solvation -73.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds