Wall clock time and date at job start Tue Mar 31 2020 22:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 119.99982 * 2 1 4 4 H 1.48504 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47295 * 299.99846 * 3 2 1 6 6 H 1.48503 * 109.47090 * 60.00099 * 3 2 1 7 7 C 1.39943 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99670 * 197.86006 * 7 2 1 9 9 C 1.41396 * 120.00204 * 17.85921 * 7 2 1 10 10 C 1.40719 * 120.24585 * 204.38012 * 9 7 2 11 11 C 1.37617 * 119.74528 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24972 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75018 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.46864 * 89.99609 * 13 12 11 15 15 C 1.34774 * 119.99769 * 180.02562 * 14 13 12 16 16 O 1.21584 * 120.00142 * 0.02562 * 15 14 13 17 17 C 1.47608 * 119.99645 * 180.02562 * 15 14 13 18 18 C 1.39700 * 120.10292 * 359.97438 * 17 15 14 19 19 C 1.37712 * 119.96844 * 179.77115 * 18 17 15 20 20 C 1.39016 * 120.26967 * 0.23746 * 19 18 17 21 21 C 1.39251 * 120.04504 * 359.95609 * 20 19 18 22 22 C 1.38290 * 119.96385 * 0.12119 * 21 20 19 23 23 O 1.36155 * 120.76199 * 180.20453 * 21 20 19 24 24 C 1.43169 * 116.69162 * 342.77892 * 23 21 20 25 25 C 1.53467 * 108.22190 * 46.22153 * 24 23 21 26 26 O 1.35964 * 119.23691 * 179.82686 * 20 19 18 27 27 C 1.38638 * 120.49683 * 0.24750 * 12 11 10 28 28 C 1.37616 * 120.25133 * 359.45250 * 27 12 11 29 29 H 0.97002 * 120.00029 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.12232 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.87410 * 179.97438 * 11 10 9 32 32 H 1.08995 * 109.46787 * 330.00151 * 13 12 11 33 33 H 1.08993 * 109.47382 * 209.99819 * 13 12 11 34 34 H 0.96998 * 120.00080 * 0.02562 * 14 13 12 35 35 H 1.08004 * 120.01537 * 0.06032 * 18 17 15 36 36 H 1.08000 * 119.86716 * 180.24916 * 19 18 17 37 37 H 1.08000 * 120.02458 * 179.90844 * 22 21 20 38 38 H 1.08995 * 109.71337 * 286.54034 * 24 23 21 39 39 H 1.09002 * 109.71468 * 165.89734 * 24 23 21 40 40 H 1.08998 * 109.70854 * 180.49440 * 25 24 23 41 41 H 1.08998 * 109.74060 * 59.89419 * 25 24 23 42 42 H 1.07999 * 119.86615 * 179.70721 * 27 12 11 43 43 H 1.07998 * 120.12487 * 180.27236 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3520 -2.4072 -0.3745 10 6 1.8257 -3.6499 0.0853 11 6 1.1797 -4.8068 -0.2865 12 6 0.0667 -4.7511 -1.1112 13 6 -0.6317 -6.0250 -1.5118 14 7 -1.6749 -6.3388 -0.5321 15 6 -2.4343 -7.4415 -0.6863 16 8 -2.2533 -8.1761 -1.6381 17 6 -3.4857 -7.7573 0.3004 18 6 -3.6950 -6.9150 1.3951 19 6 -4.6799 -7.2098 2.3115 20 6 -5.4651 -8.3463 2.1551 21 6 -5.2587 -9.1921 1.0683 22 6 -4.2703 -8.9025 0.1455 23 8 -6.0220 -10.3068 0.8986 24 6 -6.7526 -10.7660 2.0411 25 6 -7.4401 -9.5565 2.6889 26 8 -6.4291 -8.6191 3.0743 27 6 -0.4053 -3.5327 -1.5746 28 6 0.2211 -2.3627 -1.2106 29 1 -0.4850 0.8401 -0.0004 30 1 2.6934 -3.6956 0.7267 31 1 1.5418 -5.7617 0.0647 32 1 0.0911 -6.8400 -1.5465 33 1 -1.0835 -5.8978 -2.4955 34 1 -1.8190 -5.7529 0.2274 35 1 -3.0880 -6.0306 1.5202 36 1 -4.8430 -6.5554 3.1549 37 1 -4.1085 -9.5586 -0.6969 38 1 -6.0687 -11.2258 2.7544 39 1 -7.5033 -11.4924 1.7298 40 1 -7.9976 -9.8781 3.5686 41 1 -8.1186 -9.0918 1.9735 42 1 -1.2705 -3.5015 -2.2203 43 1 -0.1510 -1.4143 -1.5693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461155394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:10 Heat of formation + Delta-G solvation = -68.205574 kcal Electronic energy + Delta-G solvation = -27309.925773 eV Core-core repulsion = 23285.074540 eV Total energy + Delta-G solvation = -4024.851233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55946 -39.67378 -37.82546 -37.58602 -37.22722 -34.77109 -33.48521 -31.71859 -30.93237 -30.37040 -29.38716 -28.87215 -26.85742 -25.32805 -24.03098 -22.85946 -22.03560 -21.09061 -20.14410 -20.14039 -19.04561 -17.95712 -17.52845 -17.40539 -16.59701 -15.79987 -15.62738 -15.42370 -15.27018 -14.92651 -14.70958 -14.37666 -14.10855 -14.06515 -13.88860 -13.72106 -13.48015 -13.35893 -12.73149 -12.55720 -12.09555 -12.06594 -12.00155 -11.70822 -11.45017 -11.35298 -11.17789 -11.04714 -10.81130 -10.73971 -10.46166 -9.88561 -9.66422 -9.49792 -9.24104 -8.92799 -8.69951 -8.32811 -7.58725 -7.46753 -6.88699 -4.47889 0.66779 1.08252 2.52275 2.60576 2.83777 2.92553 2.97048 3.01242 3.03891 3.07360 3.68408 3.76411 3.82160 3.84682 4.28904 4.39884 4.48749 4.51942 4.77356 4.84431 4.95204 5.03472 5.09895 5.14990 5.56309 5.58912 5.77939 5.86852 5.90052 5.91038 6.12390 6.22328 6.24829 6.30828 6.34251 6.55381 6.80501 6.85822 6.96345 7.07969 7.17038 7.25197 7.50021 7.68121 7.90010 7.94647 8.00406 8.18042 8.46257 8.52805 8.77512 8.85193 10.05253 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.002052 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.672706 B =13641.188356 C =14622.192453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.070 4.070 12 C -0.247 4.247 13 C 0.184 3.816 14 N -0.710 5.710 15 C 0.553 3.447 16 O -0.548 6.548 17 C -0.126 4.126 18 C -0.077 4.077 19 C -0.120 4.120 20 C 0.071 3.929 21 C 0.038 3.962 22 C -0.054 4.054 23 O -0.305 6.305 24 C 0.020 3.980 25 C 0.019 3.981 26 O -0.305 6.305 27 C -0.081 4.081 28 C -0.169 4.169 29 H 0.282 0.718 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.401 0.599 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.756 -13.914 6.082 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.113 3.887 10 C -0.249 4.249 11 C -0.088 4.088 12 C -0.248 4.248 13 C 0.063 3.937 14 N -0.361 5.361 15 C 0.340 3.660 16 O -0.428 6.428 17 C -0.130 4.130 18 C -0.096 4.096 19 C -0.138 4.138 20 C 0.025 3.975 21 C -0.007 4.007 22 C -0.074 4.074 23 O -0.220 6.220 24 C -0.056 4.056 25 C -0.056 4.056 26 O -0.219 6.219 27 C -0.100 4.100 28 C -0.189 4.189 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.237 0.763 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.096 0.904 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.850 -14.294 5.420 20.628 hybrid contribution -0.003 0.980 0.602 1.150 sum -13.853 -13.314 6.022 20.135 Atomic orbital electron populations 1.69825 1.07644 1.29374 1.34324 1.25955 0.94761 1.01507 0.92123 0.86254 0.81055 0.80770 0.78658 1.18309 1.19600 1.19912 1.19694 0.98240 0.91251 1.39422 0.90224 1.17682 0.90874 0.92067 0.88027 1.20977 1.03965 0.92802 1.07174 1.20416 0.95094 0.96538 0.96785 1.18983 1.02130 0.92694 1.11027 1.19992 0.87933 0.95225 0.90564 1.46464 1.35604 1.25034 1.28990 1.18090 0.81340 0.81502 0.85054 1.90752 1.70228 1.49747 1.32078 1.19787 0.99136 0.96801 0.97232 1.21181 0.96830 0.99044 0.92575 1.20371 0.96787 0.95194 1.01474 1.19145 0.92327 0.95151 0.90850 1.18699 0.95912 0.88635 0.97432 1.20460 0.91246 0.96909 0.98751 1.86354 1.58967 1.40914 1.35755 1.23638 0.96693 0.96600 0.88635 1.23669 0.89593 0.89639 1.02720 1.86283 1.36022 1.60987 1.38614 1.20570 0.98062 0.92547 0.98810 1.21314 0.99541 0.96778 1.01239 0.90742 0.88883 0.89319 0.92183 0.92132 0.76338 0.84118 0.84010 0.83441 0.90383 0.85949 0.85937 0.90257 0.89340 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.38 10.95 55.55 0.61 -18.77 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.89 29.59 -169.99 -5.03 12.86 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -11.60 9.05 -37.74 -0.34 -11.94 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 9 C 0.12 2.95 5.58 -106.82 -0.60 2.35 16 10 C -0.23 -5.34 9.80 -38.87 -0.38 -5.72 16 11 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 12 C -0.25 -5.01 5.27 -104.33 -0.55 -5.56 16 13 C 0.18 3.30 5.79 -5.19 -0.03 3.27 16 14 N -0.71 -11.44 5.50 -62.51 -0.34 -11.79 16 15 C 0.55 9.13 7.76 -12.44 -0.10 9.03 16 16 O -0.55 -10.71 16.34 5.29 0.09 -10.62 16 17 C -0.13 -1.76 5.87 -104.99 -0.62 -2.37 16 18 C -0.08 -0.92 9.53 -39.23 -0.37 -1.29 16 19 C -0.12 -1.33 9.94 -39.49 -0.39 -1.72 16 20 C 0.07 0.82 6.51 -38.92 -0.25 0.57 16 21 C 0.04 0.47 6.48 -39.19 -0.25 0.21 16 22 C -0.05 -0.73 9.50 -39.02 -0.37 -1.10 16 23 O -0.31 -3.35 10.42 -32.98 -0.34 -3.69 16 24 C 0.02 0.13 7.26 37.40 0.27 0.40 16 25 C 0.02 0.12 7.26 37.40 0.27 0.39 16 26 O -0.30 -3.10 10.41 -32.38 -0.34 -3.44 16 27 C -0.08 -1.77 9.67 -39.66 -0.38 -2.16 16 28 C -0.17 -4.17 8.70 -38.87 -0.34 -4.51 16 29 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 30 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 34 H 0.40 5.91 6.49 -40.82 -0.26 5.65 16 35 H 0.14 1.47 6.39 -52.48 -0.34 1.13 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.15 2.04 7.64 -52.49 -0.40 1.64 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.12 3.03 6.16 -52.49 -0.32 2.70 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -29.68 367.14 -9.83 -39.50 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.10 Total: 10.66 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -4.91 Total: -20.25 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.26 Total: -30.55 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.59 Total: -17.75 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.68 -9.83 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461155394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.701 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds