Wall clock time and date at job start Tue Mar 31 2020 22:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 119.99982 * 2 1 4 4 H 1.48504 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47295 * 299.99846 * 3 2 1 6 6 H 1.48503 * 109.47090 * 60.00099 * 3 2 1 7 7 C 1.39943 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99670 * 197.86006 * 7 2 1 9 9 C 1.41396 * 120.00204 * 17.85921 * 7 2 1 10 10 C 1.40719 * 120.24585 * 204.38012 * 9 7 2 11 11 C 1.37617 * 119.74528 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24972 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75018 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.46864 * 89.99609 * 13 12 11 15 15 C 1.34774 * 119.99769 * 180.02562 * 14 13 12 16 16 O 1.21584 * 120.00142 * 0.02562 * 15 14 13 17 17 C 1.47608 * 119.99645 * 180.02562 * 15 14 13 18 18 C 1.39700 * 120.10292 * 359.97438 * 17 15 14 19 19 C 1.37712 * 119.96844 * 179.77115 * 18 17 15 20 20 C 1.39016 * 120.26967 * 0.23746 * 19 18 17 21 21 C 1.39251 * 120.04504 * 359.95609 * 20 19 18 22 22 C 1.38290 * 119.96385 * 0.12119 * 21 20 19 23 23 O 1.36155 * 120.76199 * 180.20453 * 21 20 19 24 24 C 1.43169 * 116.69162 * 342.77892 * 23 21 20 25 25 C 1.53467 * 108.22190 * 46.22153 * 24 23 21 26 26 O 1.35964 * 119.23691 * 179.82686 * 20 19 18 27 27 C 1.38638 * 120.49683 * 0.24750 * 12 11 10 28 28 C 1.37616 * 120.25133 * 359.45250 * 27 12 11 29 29 H 0.97002 * 120.00029 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.12232 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.87410 * 179.97438 * 11 10 9 32 32 H 1.08995 * 109.46787 * 330.00151 * 13 12 11 33 33 H 1.08993 * 109.47382 * 209.99819 * 13 12 11 34 34 H 0.96998 * 120.00080 * 0.02562 * 14 13 12 35 35 H 1.08004 * 120.01537 * 0.06032 * 18 17 15 36 36 H 1.08000 * 119.86716 * 180.24916 * 19 18 17 37 37 H 1.08000 * 120.02458 * 179.90844 * 22 21 20 38 38 H 1.08995 * 109.71337 * 286.54034 * 24 23 21 39 39 H 1.09002 * 109.71468 * 165.89734 * 24 23 21 40 40 H 1.08998 * 109.70854 * 180.49440 * 25 24 23 41 41 H 1.08998 * 109.74060 * 59.89419 * 25 24 23 42 42 H 1.07999 * 119.86615 * 179.70721 * 27 12 11 43 43 H 1.07998 * 120.12487 * 180.27236 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3520 -2.4072 -0.3745 10 6 1.8257 -3.6499 0.0853 11 6 1.1797 -4.8068 -0.2865 12 6 0.0667 -4.7511 -1.1112 13 6 -0.6317 -6.0250 -1.5118 14 7 -1.6749 -6.3388 -0.5321 15 6 -2.4343 -7.4415 -0.6863 16 8 -2.2533 -8.1761 -1.6381 17 6 -3.4857 -7.7573 0.3004 18 6 -3.6950 -6.9150 1.3951 19 6 -4.6799 -7.2098 2.3115 20 6 -5.4651 -8.3463 2.1551 21 6 -5.2587 -9.1921 1.0683 22 6 -4.2703 -8.9025 0.1455 23 8 -6.0220 -10.3068 0.8986 24 6 -6.7526 -10.7660 2.0411 25 6 -7.4401 -9.5565 2.6889 26 8 -6.4291 -8.6191 3.0743 27 6 -0.4053 -3.5327 -1.5746 28 6 0.2211 -2.3627 -1.2106 29 1 -0.4850 0.8401 -0.0004 30 1 2.6934 -3.6956 0.7267 31 1 1.5418 -5.7617 0.0647 32 1 0.0911 -6.8400 -1.5465 33 1 -1.0835 -5.8978 -2.4955 34 1 -1.8190 -5.7529 0.2274 35 1 -3.0880 -6.0306 1.5202 36 1 -4.8430 -6.5554 3.1549 37 1 -4.1085 -9.5586 -0.6969 38 1 -6.0687 -11.2258 2.7544 39 1 -7.5033 -11.4924 1.7298 40 1 -7.9976 -9.8781 3.5686 41 1 -8.1186 -9.0918 1.9735 42 1 -1.2705 -3.5015 -2.2203 43 1 -0.1510 -1.4143 -1.5693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461155394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:09 Heat of formation + Delta-G solvation = -84.823508 kcal Electronic energy + Delta-G solvation = -27310.646381 eV Core-core repulsion = 23285.074540 eV Total energy + Delta-G solvation = -4025.571840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.35873 -40.92672 -39.47593 -38.35728 -38.28636 -36.35244 -35.12437 -32.69576 -31.85161 -31.81314 -31.15825 -29.82784 -28.40423 -26.21119 -25.45204 -23.96538 -22.97419 -22.87672 -21.83328 -21.18837 -19.95459 -19.22945 -18.90427 -18.32363 -17.63637 -17.14102 -16.90892 -16.56546 -16.27197 -16.04442 -15.87067 -15.53645 -15.47422 -15.30579 -14.96257 -14.90455 -14.81161 -14.34135 -14.20681 -13.81773 -13.70939 -13.48859 -13.41057 -12.90882 -12.80401 -12.70360 -12.49434 -12.24186 -12.08356 -12.02939 -11.56850 -11.50666 -11.28856 -11.17054 -10.98149 -10.12009 -9.80116 -9.38681 -9.27713 -9.23551 -8.66326 -6.35793 -0.32950 0.16757 0.84309 1.15146 1.39790 1.46742 1.54303 1.67765 1.96200 2.10549 2.20685 2.39603 2.70020 2.78412 3.17455 3.57606 3.67767 3.78001 3.91495 3.98768 4.03638 4.09147 4.22304 4.28226 4.32845 4.52421 4.54060 4.57946 4.67563 4.69987 4.80019 4.96554 4.98222 5.06214 5.15737 5.16928 5.32973 5.37191 5.43818 5.46754 5.69776 5.79903 5.92285 6.09979 6.21420 6.27971 6.37075 6.56983 6.69076 6.92897 7.01616 7.16784 8.30178 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.002052 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.672706 B =13641.188356 C =14622.192453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.076 0.924 9 C 0.086 3.914 10 C -0.243 4.243 11 C -0.067 4.067 12 C -0.228 4.228 13 C 0.192 3.808 14 N -0.705 5.705 15 C 0.557 3.443 16 O -0.584 6.584 17 C -0.142 4.142 18 C -0.072 4.072 19 C -0.120 4.120 20 C 0.075 3.925 21 C 0.035 3.965 22 C -0.067 4.067 23 O -0.323 6.323 24 C 0.012 3.988 25 C 0.013 3.987 26 O -0.313 6.313 27 C -0.081 4.081 28 C -0.192 4.192 29 H 0.289 0.711 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.409 0.591 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.156 0.844 40 H 0.160 0.840 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.132 -14.665 7.478 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.524 4.524 8 H 0.094 0.906 9 C 0.084 3.916 10 C -0.262 4.262 11 C -0.086 4.086 12 C -0.230 4.230 13 C 0.070 3.930 14 N -0.356 5.356 15 C 0.345 3.655 16 O -0.466 6.466 17 C -0.146 4.146 18 C -0.091 4.091 19 C -0.138 4.138 20 C 0.029 3.971 21 C -0.011 4.011 22 C -0.087 4.087 23 O -0.238 6.238 24 C -0.062 4.062 25 C -0.061 4.061 26 O -0.228 6.228 27 C -0.100 4.100 28 C -0.211 4.211 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.246 0.754 35 H 0.172 0.828 36 H 0.182 0.818 37 H 0.153 0.847 38 H 0.101 0.899 39 H 0.174 0.826 40 H 0.177 0.823 41 H 0.101 0.899 42 H 0.123 0.877 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.246 -15.059 6.840 22.494 hybrid contribution 0.245 0.980 0.218 1.033 sum -15.002 -14.079 7.058 21.750 Atomic orbital electron populations 1.69864 1.08897 1.30623 1.34908 1.26739 0.95509 1.04461 0.91240 0.85188 0.79459 0.76333 0.78946 1.18277 1.18994 1.18992 1.19908 0.98408 0.92530 1.41549 0.90602 1.18010 0.91667 0.93099 0.88853 1.21161 1.04521 0.92984 1.07577 1.20689 0.94718 0.96988 0.96170 1.19173 1.01436 0.93086 1.09261 1.19820 0.88341 0.93959 0.90901 1.46241 1.35195 1.25263 1.28873 1.18399 0.81365 0.80757 0.84935 1.90729 1.71318 1.50838 1.33690 1.19562 0.99272 0.97996 0.97747 1.21296 0.97025 0.98912 0.91861 1.20636 0.96107 0.95337 1.01746 1.19287 0.92487 0.94849 0.90506 1.18688 0.95749 0.89352 0.97262 1.20420 0.92202 0.96961 0.99082 1.86329 1.59070 1.40393 1.38024 1.24034 0.97163 0.97292 0.87752 1.24047 0.88760 0.88735 1.04599 1.86277 1.36227 1.61898 1.38359 1.20760 0.98251 0.92327 0.98683 1.21262 1.00392 0.97054 1.02416 0.90014 0.88356 0.86577 0.91692 0.92200 0.75390 0.82817 0.81823 0.84668 0.89930 0.82636 0.82299 0.89873 0.87733 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.12 10.95 21.83 0.24 -40.88 16 2 C 0.04 1.77 5.14 85.26 0.44 2.21 16 3 Si 0.98 37.02 29.59 68.60 2.03 39.05 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 6 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.49 -25.86 9.05 23.46 0.21 -25.65 16 8 H 0.08 3.85 7.91 -2.91 -0.02 3.82 16 9 C 0.09 4.48 5.58 -21.29 -0.12 4.36 16 10 C -0.24 -11.34 9.80 22.73 0.22 -11.12 16 11 C -0.07 -2.73 9.67 22.22 0.21 -2.52 16 12 C -0.23 -9.01 5.27 -19.67 -0.10 -9.11 16 13 C 0.19 6.62 5.79 85.63 0.50 7.11 16 14 N -0.70 -21.90 5.50 -469.94 -2.58 -24.49 16 15 C 0.56 18.16 7.76 86.72 0.67 18.83 16 16 O -0.58 -22.92 16.34 -3.98 -0.07 -22.98 16 17 C -0.14 -3.90 5.87 -20.10 -0.12 -4.02 16 18 C -0.07 -1.60 9.53 22.50 0.21 -1.39 16 19 C -0.12 -2.42 9.94 22.33 0.22 -2.19 16 20 C 0.07 1.61 6.51 22.70 0.15 1.76 16 21 C 0.03 0.82 6.48 22.53 0.15 0.97 16 22 C -0.07 -1.82 9.50 22.63 0.22 -1.61 16 23 O -0.32 -6.69 10.42 -83.12 -0.87 -7.55 16 24 C 0.01 0.13 7.26 72.14 0.52 0.65 16 25 C 0.01 0.12 7.26 72.14 0.52 0.65 16 26 O -0.31 -5.56 10.41 -80.95 -0.84 -6.40 16 27 C -0.08 -3.55 9.67 22.22 0.21 -3.33 16 28 C -0.19 -9.66 8.70 22.73 0.20 -9.46 16 29 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 30 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 33 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 34 H 0.41 11.45 6.49 -92.71 -0.60 10.84 16 35 H 0.15 2.92 6.39 -2.91 -0.02 2.90 16 36 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.14 3.91 7.64 -2.91 -0.02 3.88 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.16 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.10 5.37 6.16 -2.91 -0.02 5.35 16 Total: -1.00 -65.77 367.14 2.69 -63.07 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.46 Total: 34.05 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 4.32 Total: -33.87 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -2.34 Total: -65.37 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.77 Total: -36.94 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Total: -65.77 2.69 -63.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461155394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.751 kcal (2) G-P(sol) polarization free energy of solvation -65.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds