Wall clock time and date at job start Tue Mar 31 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34812 * 126.59245 * 2 1 4 4 C 1.36599 * 106.83724 * 180.02562 * 3 2 1 5 5 C 1.47521 * 125.77241 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00107 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00235 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00300 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.63887 * 36.68761 * 8 7 5 10 10 C 1.55159 * 110.72153 * 160.02104 * 8 7 5 11 11 C 1.54907 * 101.57948 * 153.86761 * 10 8 7 12 12 N 1.47426 * 104.83366 * 322.98871 * 11 10 8 13 13 C 1.34779 * 125.65209 * 204.09048 * 12 11 10 14 14 O 1.21278 * 119.99791 * 180.02562 * 13 12 11 15 15 C 1.50696 * 119.99473 * 0.04999 * 13 12 11 16 16 S 1.81006 * 109.46635 * 179.97438 * 15 13 12 17 17 C 1.76207 * 99.99744 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00356 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99772 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00168 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99865 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46909 * 89.99713 * 21 19 17 23 23 H 1.48496 * 109.47001 * 209.99678 * 21 19 17 24 24 H 1.48500 * 109.47066 * 329.99952 * 21 19 17 25 25 C 1.47031 * 108.70202 * 24.13067 * 12 11 10 26 26 N 1.34404 * 108.46116 * 359.97438 * 4 3 2 27 27 N 1.28764 * 109.52064 * 0.02562 * 26 4 3 28 28 H 1.09001 * 109.47308 * 90.00422 * 1 2 3 29 29 H 1.09002 * 109.47220 * 210.00411 * 1 2 3 30 30 H 1.09006 * 109.47014 * 330.00037 * 1 2 3 31 31 H 1.07992 * 126.58700 * 0.02562 * 3 2 1 32 32 H 0.97005 * 119.99831 * 359.97438 * 7 5 4 33 33 H 1.08996 * 111.00232 * 271.94034 * 10 8 7 34 34 H 1.08998 * 110.99987 * 35.79654 * 10 8 7 35 35 H 1.09006 * 110.36531 * 204.15537 * 11 10 8 36 36 H 1.09000 * 110.36803 * 81.82898 * 11 10 8 37 37 H 1.09001 * 109.47243 * 299.99107 * 15 13 12 38 38 H 1.08993 * 109.47521 * 59.99876 * 15 13 12 39 39 H 0.97001 * 120.00733 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.88230 * 239.52251 * 25 12 11 41 41 H 1.09005 * 110.00850 * 118.42860 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 -0.0006 5 6 4.7704 1.4557 -0.0013 6 8 4.6756 2.6679 -0.0010 7 7 5.9867 0.8749 -0.0024 8 6 7.1944 1.7041 -0.0037 9 1 7.0487 2.5960 0.6057 10 6 8.4194 0.8905 0.4911 11 6 9.5875 1.6338 -0.2036 12 7 9.0589 2.0152 -1.5260 13 6 9.7974 2.2590 -2.6267 14 8 9.2533 2.5673 -3.6659 15 6 11.2990 2.1481 -2.5662 16 16 11.9982 2.5320 -4.1911 17 6 13.7135 2.3320 -3.8410 18 1 14.0329 2.0510 -2.8484 19 6 14.6543 2.5367 -4.8409 20 7 14.2651 2.8797 -6.0506 21 14 16.4728 2.3254 -4.4696 22 1 16.8703 0.9179 -4.7272 23 1 17.2643 3.2307 -5.3409 24 1 16.7294 2.6595 -3.0456 25 6 7.5925 2.0864 -1.4448 26 7 3.5239 -0.7230 -0.0004 27 7 2.3009 -1.1258 -0.0002 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9562 2.1161 0.0004 32 1 6.0623 -0.0922 -0.0023 33 1 8.5120 0.9446 1.5758 34 1 8.3614 -0.1452 0.1566 35 1 10.4459 0.9712 -0.3150 36 1 9.8638 2.5218 0.3650 37 1 11.6859 2.8512 -1.8286 38 1 11.5773 1.1334 -2.2819 39 1 14.9225 3.0231 -6.7493 40 1 7.1477 1.3852 -2.1507 41 1 7.2555 3.0991 -1.6662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493273884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:51 Heat of formation + Delta-G solvation = 37.114476 kcal Electronic energy + Delta-G solvation = -25535.709575 eV Core-core repulsion = 21579.621722 eV Total energy + Delta-G solvation = -3956.087854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.66039 -40.29750 -39.17729 -37.22136 -35.22209 -34.36568 -32.40990 -31.66296 -30.83492 -29.68189 -28.60890 -27.66364 -25.47733 -24.39099 -23.25400 -22.71844 -21.41043 -20.81478 -19.34116 -18.59959 -17.68666 -17.06254 -16.75359 -16.65826 -16.38625 -15.77695 -15.20601 -15.07715 -14.87064 -14.78283 -14.46261 -14.07273 -13.86909 -13.78880 -13.70657 -13.45736 -12.85670 -12.61993 -12.54619 -12.46758 -12.14401 -11.86906 -11.76496 -11.75410 -11.11268 -11.04248 -11.00055 -10.90757 -10.74831 -10.50422 -9.81914 -9.79622 -9.53613 -9.29722 -9.04672 -8.49422 -8.20690 -6.47986 -6.19464 -3.90133 0.64896 1.26644 1.52313 2.60037 2.91305 3.02643 3.10380 3.23986 3.28311 3.32329 3.63732 3.75423 3.82983 4.14023 4.22231 4.29641 4.36089 4.36709 4.49304 4.65892 4.75834 4.87112 4.97790 5.09964 5.12653 5.15642 5.28728 5.46460 5.49819 5.61876 5.68410 5.74656 5.79479 5.85551 5.94880 6.13810 6.15898 6.42415 7.06204 7.47473 7.61381 7.67357 7.81293 8.37214 8.58602 9.25629 10.87968 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032153 B = 0.001782 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.629708 B =15710.750613 C =15979.524093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.364 5.364 3 C 0.097 3.903 4 C -0.103 4.103 5 C 0.608 3.392 6 O -0.533 6.533 7 N -0.705 5.705 8 C 0.136 3.864 9 H 0.109 0.891 10 C -0.139 4.139 11 C 0.103 3.897 12 N -0.626 5.626 13 C 0.548 3.452 14 O -0.514 6.514 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.099 3.901 26 N -0.204 5.204 27 N -0.064 5.064 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.207 0.793 32 H 0.411 0.589 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.715 -6.113 19.163 33.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.148 5.148 3 C -0.061 4.061 4 C -0.243 4.243 5 C 0.392 3.608 6 O -0.408 6.408 7 N -0.357 5.357 8 C 0.031 3.969 9 H 0.127 0.873 10 C -0.177 4.177 11 C -0.021 4.021 12 N -0.364 5.364 13 C 0.337 3.663 14 O -0.387 6.387 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.026 4.026 26 N -0.078 5.078 27 N -0.044 5.044 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.224 0.776 32 H 0.247 0.753 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.488 -6.237 17.344 33.096 hybrid contribution 1.504 0.070 1.398 2.055 sum -25.984 -6.167 18.743 32.627 Atomic orbital electron populations 1.22245 0.72258 1.05928 1.05039 1.50404 1.09299 1.05662 1.49441 1.23415 0.90099 0.95135 0.97414 1.21424 0.94546 0.90445 1.17860 1.16746 0.81747 0.86340 0.75919 1.90847 1.86578 1.12976 1.50377 1.45707 1.04547 1.10925 1.74494 1.22033 0.83456 0.95068 0.96386 0.87320 1.23094 0.93247 0.99938 1.01417 1.22277 0.96927 0.99298 0.83597 1.48445 1.06253 1.71279 1.10434 1.20051 0.88772 0.75884 0.81622 1.90716 1.73177 1.45805 1.29031 1.23505 0.93047 1.04966 1.08151 1.85433 1.03152 1.90365 1.04480 1.22862 0.91284 1.54600 0.99587 0.90904 1.24991 0.99582 0.94554 0.94442 1.70017 1.34692 1.43879 1.01675 0.86167 0.82732 0.78208 0.78378 1.20281 1.20762 1.19687 1.22234 0.81385 1.02659 0.96277 1.74632 1.13072 1.10187 1.09881 1.82035 0.93393 1.06400 1.22595 0.88985 0.87945 0.88214 0.77637 0.75261 0.88870 0.89615 0.89656 0.90807 0.89191 0.89243 0.92188 0.91176 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.07 11.51 59.85 0.69 0.76 16 2 N -0.36 -2.16 4.03 -67.85 -0.27 -2.43 16 3 C 0.10 0.63 11.31 -16.84 -0.19 0.44 16 4 C -0.10 -0.97 6.99 -83.55 -0.58 -1.56 16 5 C 0.61 6.46 7.81 -12.48 -0.10 6.37 16 6 O -0.53 -6.97 16.59 5.28 0.09 -6.88 16 7 N -0.71 -6.47 5.13 -53.07 -0.27 -6.74 16 8 C 0.14 1.30 3.24 -66.10 -0.21 1.08 16 9 H 0.11 1.06 7.69 -51.93 -0.40 0.66 16 10 C -0.14 -1.03 6.69 -24.58 -0.16 -1.20 16 11 C 0.10 1.04 6.69 -2.53 -0.02 1.03 16 12 N -0.63 -9.28 3.33 -170.51 -0.57 -9.85 16 13 C 0.55 10.92 7.87 -10.99 -0.09 10.84 16 14 O -0.51 -12.42 16.19 5.56 0.09 -12.33 16 15 C -0.15 -3.03 5.16 36.00 0.19 -2.85 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C 0.10 1.32 6.62 -3.06 -0.02 1.30 16 26 N -0.20 -2.09 12.04 32.85 0.40 -1.70 16 27 N -0.06 -0.60 13.78 60.35 0.83 0.23 16 28 H 0.09 -0.01 8.14 -51.93 -0.42 -0.44 16 29 H 0.10 0.02 8.14 -51.93 -0.42 -0.41 16 30 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 31 H 0.21 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.41 3.24 8.20 -40.82 -0.33 2.90 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.60 8.00 -51.93 -0.42 0.18 16 35 H 0.09 0.83 7.48 -51.93 -0.39 0.44 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 38 H 0.09 1.70 7.85 -51.92 -0.41 1.29 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -39.58 373.06 -6.18 -45.76 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.29 Total: -1.80 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.30 Total: 3.18 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.85 Total: -46.13 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.18 Total: -19.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.58 -6.18 -45.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493273884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.873 kcal (2) G-P(sol) polarization free energy of solvation -39.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds