Wall clock time and date at job start Tue Mar 31 2020 22:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34812 * 126.59245 * 2 1 4 4 C 1.36599 * 106.83724 * 180.02562 * 3 2 1 5 5 C 1.47521 * 125.77241 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00107 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00235 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00300 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.63887 * 36.68761 * 8 7 5 10 10 C 1.55159 * 110.72153 * 160.02104 * 8 7 5 11 11 C 1.54907 * 101.57948 * 153.86761 * 10 8 7 12 12 N 1.47426 * 104.83366 * 322.98871 * 11 10 8 13 13 C 1.34779 * 125.65209 * 204.09048 * 12 11 10 14 14 O 1.21278 * 119.99791 * 180.02562 * 13 12 11 15 15 C 1.50696 * 119.99473 * 0.04999 * 13 12 11 16 16 S 1.81006 * 109.46635 * 179.97438 * 15 13 12 17 17 C 1.76207 * 99.99744 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00356 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99772 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00168 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99865 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46909 * 89.99713 * 21 19 17 23 23 H 1.48496 * 109.47001 * 209.99678 * 21 19 17 24 24 H 1.48500 * 109.47066 * 329.99952 * 21 19 17 25 25 C 1.47031 * 108.70202 * 24.13067 * 12 11 10 26 26 N 1.34404 * 108.46116 * 359.97438 * 4 3 2 27 27 N 1.28764 * 109.52064 * 0.02562 * 26 4 3 28 28 H 1.09001 * 109.47308 * 90.00422 * 1 2 3 29 29 H 1.09002 * 109.47220 * 210.00411 * 1 2 3 30 30 H 1.09006 * 109.47014 * 330.00037 * 1 2 3 31 31 H 1.07992 * 126.58700 * 0.02562 * 3 2 1 32 32 H 0.97005 * 119.99831 * 359.97438 * 7 5 4 33 33 H 1.08996 * 111.00232 * 271.94034 * 10 8 7 34 34 H 1.08998 * 110.99987 * 35.79654 * 10 8 7 35 35 H 1.09006 * 110.36531 * 204.15537 * 11 10 8 36 36 H 1.09000 * 110.36803 * 81.82898 * 11 10 8 37 37 H 1.09001 * 109.47243 * 299.99107 * 15 13 12 38 38 H 1.08993 * 109.47521 * 59.99876 * 15 13 12 39 39 H 0.97001 * 120.00733 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.88230 * 239.52251 * 25 12 11 41 41 H 1.09005 * 110.00850 * 118.42860 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 -0.0006 5 6 4.7704 1.4557 -0.0013 6 8 4.6756 2.6679 -0.0010 7 7 5.9867 0.8749 -0.0024 8 6 7.1944 1.7041 -0.0037 9 1 7.0487 2.5960 0.6057 10 6 8.4194 0.8905 0.4911 11 6 9.5875 1.6338 -0.2036 12 7 9.0589 2.0152 -1.5260 13 6 9.7974 2.2590 -2.6267 14 8 9.2533 2.5673 -3.6659 15 6 11.2990 2.1481 -2.5662 16 16 11.9982 2.5320 -4.1911 17 6 13.7135 2.3320 -3.8410 18 1 14.0329 2.0510 -2.8484 19 6 14.6543 2.5367 -4.8409 20 7 14.2651 2.8797 -6.0506 21 14 16.4728 2.3254 -4.4696 22 1 16.8703 0.9179 -4.7272 23 1 17.2643 3.2307 -5.3409 24 1 16.7294 2.6595 -3.0456 25 6 7.5925 2.0864 -1.4448 26 7 3.5239 -0.7230 -0.0004 27 7 2.3009 -1.1258 -0.0002 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9562 2.1161 0.0004 32 1 6.0623 -0.0922 -0.0023 33 1 8.5120 0.9446 1.5758 34 1 8.3614 -0.1452 0.1566 35 1 10.4459 0.9712 -0.3150 36 1 9.8638 2.5218 0.3650 37 1 11.6859 2.8512 -1.8286 38 1 11.5773 1.1334 -2.2819 39 1 14.9225 3.0231 -6.7493 40 1 7.1477 1.3852 -2.1507 41 1 7.2555 3.0991 -1.6662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493273884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:50 Heat of formation + Delta-G solvation = 5.521555 kcal Electronic energy + Delta-G solvation = -25537.079547 eV Core-core repulsion = 21579.621722 eV Total energy + Delta-G solvation = -3957.457825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.23768 -41.33492 -40.31175 -38.44438 -35.75583 -35.26457 -34.57945 -32.52715 -31.78518 -30.88079 -29.31021 -28.46193 -27.64038 -25.28572 -24.15093 -23.22024 -22.19181 -21.60798 -20.70079 -19.68472 -19.14021 -18.19539 -17.81785 -17.25575 -17.08610 -16.89606 -16.85517 -16.51917 -15.94486 -15.68445 -15.62366 -15.39930 -14.99405 -14.53279 -14.45243 -14.16902 -13.98258 -13.92568 -13.69401 -13.33383 -13.16560 -13.14685 -12.90384 -12.87243 -12.68452 -12.60764 -12.30870 -11.88446 -11.72054 -11.35085 -11.34776 -11.13428 -11.04147 -10.49456 -10.27386 -10.19654 -9.75909 -8.68023 -8.33720 -6.12894 0.13127 0.55116 1.14302 1.23108 1.43905 1.44492 1.53572 1.56639 1.86603 2.16152 2.22332 2.28173 3.00530 3.13932 3.22180 3.39214 3.48915 3.52164 3.86955 3.89662 3.94487 4.02728 4.15482 4.24862 4.32384 4.37211 4.45000 4.47836 4.63849 4.68164 4.71114 4.75025 4.80735 4.96334 5.05897 5.27514 5.36849 5.42616 5.42657 6.20663 6.30387 6.35261 6.84849 7.04667 7.07140 7.08337 8.75667 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032153 B = 0.001782 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.629708 B =15710.750613 C =15979.524093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.351 5.351 3 C 0.110 3.890 4 C -0.129 4.129 5 C 0.608 3.392 6 O -0.562 6.562 7 N -0.698 5.698 8 C 0.147 3.853 9 H 0.113 0.887 10 C -0.121 4.121 11 C 0.090 3.910 12 N -0.615 5.615 13 C 0.544 3.456 14 O -0.570 6.570 15 C -0.117 4.117 16 S -0.156 6.156 17 C -0.545 4.545 18 H 0.086 0.914 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.256 1.256 25 C 0.097 3.903 26 N -0.224 5.224 27 N -0.094 5.094 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.237 0.763 32 H 0.418 0.582 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.054 0.946 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.906 -6.892 22.359 35.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.135 5.135 3 C -0.049 4.049 4 C -0.269 4.269 5 C 0.394 3.606 6 O -0.440 6.440 7 N -0.349 5.349 8 C 0.041 3.959 9 H 0.131 0.869 10 C -0.159 4.159 11 C -0.032 4.032 12 N -0.351 5.351 13 C 0.333 3.667 14 O -0.449 6.449 15 C -0.268 4.268 16 S 0.071 5.929 17 C -0.692 4.692 18 H 0.104 0.896 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.180 1.180 25 C -0.028 4.028 26 N -0.097 5.097 27 N -0.074 5.074 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.149 0.851 31 H 0.254 0.746 32 H 0.256 0.744 33 H 0.147 0.853 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.720 -7.079 20.614 35.263 hybrid contribution 1.336 0.315 0.475 1.453 sum -26.384 -6.764 21.089 34.447 Atomic orbital electron populations 1.22742 0.69304 1.07931 1.06554 1.50736 1.10780 1.04580 1.47442 1.23894 0.89228 0.96377 0.95384 1.21460 0.95164 0.90400 1.19915 1.16951 0.82409 0.86093 0.75177 1.90825 1.87059 1.14159 1.51966 1.45660 1.04163 1.11264 1.73816 1.21935 0.84512 0.95965 0.93494 0.86913 1.23111 0.90143 0.99482 1.03177 1.22738 0.98378 1.00850 0.81223 1.48366 1.06888 1.68936 1.10868 1.19908 0.88660 0.75960 0.82205 1.90691 1.73894 1.48819 1.31518 1.23292 0.93377 1.06554 1.03589 1.85668 1.04912 1.91116 1.11210 1.23202 0.91153 1.54599 1.00292 0.89638 1.26160 1.05238 0.93787 0.94020 1.70191 1.36610 1.45096 1.02992 0.84923 0.75524 0.78452 0.78880 1.19272 1.20397 1.17989 1.22332 0.80339 1.01225 0.98880 1.74587 1.13842 1.10699 1.10574 1.81940 0.93643 1.08005 1.23861 0.87625 0.87188 0.85060 0.74644 0.74391 0.85270 0.88683 0.88526 0.88816 0.87132 0.87012 0.92011 0.92718 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.06 11.51 127.77 1.47 1.41 16 2 N -0.35 -3.58 4.03 -368.58 -1.49 -5.07 16 3 C 0.11 1.25 11.31 83.85 0.95 2.20 16 4 C -0.13 -2.35 6.99 40.82 0.29 -2.06 16 5 C 0.61 12.63 7.81 86.69 0.68 13.30 16 6 O -0.56 -14.54 16.59 -4.02 -0.07 -14.60 16 7 N -0.70 -12.09 5.13 -440.08 -2.26 -14.35 16 8 C 0.15 2.56 3.24 46.18 0.15 2.71 16 9 H 0.11 1.97 7.69 -2.39 -0.02 1.96 16 10 C -0.12 -1.38 6.69 31.99 0.21 -1.16 16 11 C 0.09 1.55 6.69 86.85 0.58 2.13 16 12 N -0.62 -17.77 3.33 -811.77 -2.70 -20.47 16 13 C 0.54 21.96 7.87 87.66 0.69 22.65 16 14 O -0.57 -28.94 16.19 -3.02 -0.05 -28.99 16 15 C -0.12 -4.81 5.16 71.23 0.37 -4.44 16 16 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16 17 C -0.54 -31.35 9.50 67.95 0.65 -30.70 16 18 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 19 C 0.01 0.72 5.49 84.86 0.47 1.19 16 20 N -0.91 -56.74 13.22 21.65 0.29 -56.45 16 21 Si 1.00 43.74 29.55 68.60 2.03 45.76 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 25 C 0.10 2.60 6.62 86.73 0.57 3.17 16 26 N -0.22 -4.53 12.04 -49.99 -0.60 -5.13 16 27 N -0.09 -1.72 13.78 37.02 0.51 -1.21 16 28 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.13 -0.89 8.14 -2.38 -0.02 -0.91 16 31 H 0.24 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.42 6.10 8.20 -92.70 -0.76 5.34 16 33 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.98 8.00 -2.39 -0.02 0.96 16 35 H 0.10 1.52 7.48 -2.38 -0.02 1.51 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 38 H 0.11 4.07 7.85 -2.40 -0.02 4.05 16 39 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.05 1.64 8.03 -2.39 -0.02 1.62 16 41 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -91.47 373.06 1.89 -89.59 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.31 Total: 10.60 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 7.07 Total: 10.40 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -6.25 Total: -102.68 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.12 Total: -43.59 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -91.47 1.89 -89.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493273884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.107 kcal (2) G-P(sol) polarization free energy of solvation -91.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds