Wall clock time and date at job start Tue Mar 31 2020 22:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47015 * 2 1 4 4 N 1.46496 * 109.46963 * 239.99933 * 2 1 3 5 5 C 1.34768 * 120.00309 * 84.99962 * 4 2 1 6 6 O 1.21618 * 119.99950 * 359.97438 * 5 4 2 7 7 C 1.47233 * 120.00187 * 179.97438 * 5 4 2 8 8 C 1.37011 * 127.19228 * 179.97438 * 7 5 4 9 9 N 1.33314 * 106.37311 * 180.02562 * 8 7 5 10 10 N 1.28518 * 109.44157 * 359.97438 * 9 8 7 11 11 N 1.28715 * 110.63847 * 0.02562 * 10 9 8 12 12 H 0.96991 * 126.03803 * 179.73772 * 11 10 9 13 13 C 1.53001 * 109.46894 * 119.99594 * 2 1 3 14 14 C 1.53951 * 113.74222 * 281.81817 * 13 2 1 15 15 N 1.47810 * 86.03492 * 222.08659 * 14 13 2 16 16 C 1.34774 * 134.45440 * 204.64239 * 15 14 13 17 17 O 1.21285 * 120.00303 * 179.87832 * 16 15 14 18 18 C 1.50697 * 120.00092 * 359.87237 * 16 15 14 19 19 S 1.81003 * 109.47373 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00242 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99487 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.00118 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00159 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99863 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46976 * 90.00569 * 24 22 20 26 26 H 1.48497 * 109.47050 * 210.00080 * 24 22 20 27 27 H 1.48493 * 109.47270 * 330.00463 * 24 22 20 28 28 C 1.47571 * 91.05403 * 24.55508 * 15 14 13 29 29 H 1.09004 * 109.46617 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46877 * 300.07663 * 1 2 3 31 31 H 1.08997 * 109.47272 * 60.08048 * 1 2 3 32 32 H 0.97005 * 119.99650 * 264.99525 * 4 2 1 33 33 H 1.07998 * 126.80823 * 0.02562 * 8 7 5 34 34 H 1.08997 * 112.94826 * 53.41679 * 13 2 1 35 35 H 1.08997 * 113.76776 * 336.35784 * 14 13 2 36 36 H 1.09004 * 113.76244 * 107.75097 * 14 13 2 37 37 H 1.09001 * 109.47252 * 300.00041 * 18 16 15 38 38 H 1.08998 * 109.47261 * 59.99827 * 18 16 15 39 39 H 0.96998 * 120.00393 * 179.97438 * 23 22 20 40 40 H 1.08998 * 113.77123 * 221.15078 * 28 15 14 41 41 H 1.08996 * 113.87930 * 89.76020 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8574 1.1615 -2.4119 7 6 2.6383 -0.7124 -3.5591 8 6 2.8243 -0.1772 -4.8065 9 7 3.2788 -1.1664 -5.5760 10 7 3.3751 -2.2414 -4.8782 11 7 3.0049 -2.0287 -3.6639 12 1 2.9852 -2.6850 -2.9501 13 6 2.0400 -0.7212 1.2493 14 6 1.9745 0.1332 2.5283 15 7 3.3098 -0.4177 2.8417 16 6 4.0082 -0.6110 3.9780 17 8 5.1170 -1.1006 3.9326 18 6 3.4116 -0.2188 5.3051 19 16 4.5842 -0.6002 6.6302 20 6 3.6560 -0.0570 8.0259 21 1 2.6695 0.3607 7.8890 22 6 4.1930 -0.1652 9.3012 23 7 3.4994 0.2401 10.3440 24 14 5.8995 -0.8871 9.5379 25 1 6.9098 0.1993 9.4741 26 1 5.9748 -1.5558 10.8617 27 1 6.1705 -1.8787 8.4663 28 6 3.5702 -0.6728 1.4117 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 2.2491 -1.6318 -1.1525 33 1 2.6394 0.8436 -5.1068 34 1 1.6177 -1.7192 1.3661 35 1 1.9751 1.2067 2.3400 36 1 1.1954 -0.1774 3.2246 37 1 3.1982 0.8501 5.3059 38 1 2.4875 -0.7739 5.4663 39 1 3.8745 0.1642 11.2353 40 1 4.0628 -1.6256 1.2179 41 1 4.0408 0.1624 0.8930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001509461148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:13 Heat of formation + Delta-G solvation = 61.003664 kcal Electronic energy + Delta-G solvation = -25671.798838 eV Core-core repulsion = 21716.746897 eV Total energy + Delta-G solvation = -3955.051941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.94605 -40.94405 -39.86180 -37.92831 -35.78418 -34.21075 -32.49687 -32.46009 -31.31461 -30.32518 -27.95879 -26.55231 -25.67716 -25.32771 -23.93505 -23.19046 -21.58995 -21.26983 -19.78002 -19.29138 -17.85126 -17.42857 -17.14847 -16.95642 -16.72960 -15.89780 -15.62281 -15.39343 -15.03111 -14.93864 -14.81133 -14.40523 -14.19354 -13.89087 -13.11927 -13.03634 -12.94524 -12.81953 -12.79951 -12.67372 -12.27998 -12.03075 -11.88333 -11.50724 -11.37014 -11.34351 -11.22982 -11.05517 -10.83011 -10.67671 -10.18543 -9.93151 -9.87206 -9.57690 -9.05708 -8.82913 -8.56949 -6.98916 -6.33997 -4.06669 0.25644 1.70916 1.78760 2.19915 2.43260 2.44332 2.81956 3.01561 3.28988 3.45760 3.50512 3.64386 3.81818 4.00595 4.13145 4.26557 4.31463 4.38031 4.52506 4.54997 4.60468 4.81360 4.91254 4.96850 5.05019 5.08391 5.11058 5.17614 5.26662 5.36502 5.39245 5.59063 5.67683 5.68707 5.77846 5.78913 5.92988 5.93032 6.59783 7.31216 7.57559 7.65462 7.88887 8.30024 8.36053 9.11953 10.75103 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.001879 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.460005 B =14899.414992 C =15587.019767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 H 0.101 0.899 4 N -0.720 5.720 5 C 0.599 3.401 6 O -0.508 6.508 7 C -0.069 4.069 8 C 0.036 3.964 9 N -0.269 5.269 10 N -0.043 5.043 11 N -0.374 5.374 12 H 0.451 0.549 13 C -0.137 4.137 14 C 0.116 3.884 15 N -0.650 5.650 16 C 0.555 3.445 17 O -0.516 6.516 18 C -0.117 4.117 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 C 0.114 3.886 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.206 0.794 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.992 -2.937 -27.561 28.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.119 0.881 4 N -0.371 5.371 5 C 0.382 3.618 6 O -0.381 6.381 7 C -0.204 4.204 8 C -0.123 4.123 9 N -0.134 5.134 10 N -0.025 5.025 11 N -0.101 5.101 12 H 0.298 0.702 13 C -0.157 4.157 14 C -0.008 4.008 15 N -0.389 5.389 16 C 0.344 3.656 17 O -0.390 6.390 18 C -0.267 4.267 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.515 5.515 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 C -0.009 4.009 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.222 0.778 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.918 -3.717 -28.324 29.173 hybrid contribution -0.961 0.238 1.756 2.016 sum -6.879 -3.479 -26.568 27.664 Atomic orbital electron populations 1.22185 0.94002 1.02711 1.03407 1.21093 0.94857 0.97443 0.81733 0.88125 1.45934 1.67587 1.13845 1.09734 1.16711 0.77824 0.86163 0.81101 1.90905 1.49136 1.14192 1.83831 1.22386 1.12938 0.85817 0.99212 1.23979 0.98973 1.01266 0.88109 1.75051 1.16404 0.95959 1.25964 1.78279 1.15103 1.20660 0.88452 1.45625 1.43288 1.09584 1.11652 0.70224 1.23575 0.96729 1.01283 0.94079 1.23184 0.85433 0.98552 0.93650 1.49971 1.19059 1.64492 1.05405 1.20039 0.84435 0.77306 0.83778 1.90718 1.18992 1.43118 1.86178 1.23219 1.04100 1.04965 0.94409 1.84813 1.24867 1.83197 0.98731 1.22289 1.05621 1.47957 0.91078 0.89356 1.24707 0.97931 0.93917 0.94708 1.69931 1.37708 1.45107 0.98784 0.86738 0.84241 0.81322 0.79570 1.19169 1.19869 1.15972 1.23073 0.94715 1.02034 0.81051 0.92089 0.90623 0.91662 0.76983 0.77757 0.87093 0.89145 0.89100 0.88561 0.88535 0.91885 0.90122 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 9.44 37.16 0.35 -0.32 16 2 C 0.15 0.66 2.29 -67.93 -0.16 0.51 16 3 H 0.10 0.59 7.48 -51.93 -0.39 0.20 16 4 N -0.72 -2.50 4.94 -54.95 -0.27 -2.77 16 5 C 0.60 3.65 7.77 -12.61 -0.10 3.55 16 6 O -0.51 -4.87 16.59 5.26 0.09 -4.78 16 7 C -0.07 -0.39 7.17 -82.33 -0.59 -0.98 16 8 C 0.04 0.25 11.87 -17.35 -0.21 0.05 16 9 N -0.27 -2.39 12.35 30.47 0.38 -2.01 16 10 N -0.04 -0.33 13.35 60.35 0.81 0.48 16 11 N -0.37 -1.57 6.98 33.31 0.23 -1.34 16 12 H 0.45 0.09 8.32 -190.34 -1.58 -1.50 16 13 C -0.14 -0.67 3.35 -89.69 -0.30 -0.97 16 14 C 0.12 0.84 8.08 -2.84 -0.02 0.81 16 15 N -0.65 -7.73 3.61 -178.16 -0.64 -8.37 16 16 C 0.55 9.70 8.07 -10.99 -0.09 9.61 16 17 O -0.52 -11.10 16.59 5.55 0.09 -11.00 16 18 C -0.12 -2.21 5.91 36.00 0.21 -1.99 16 19 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 20 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 21 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.14 13.97 55.49 0.78 -25.37 16 24 Si 0.86 21.51 27.74 -169.99 -4.72 16.80 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 28 C 0.11 0.92 8.27 -2.97 -0.02 0.90 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.40 0.29 7.87 -40.82 -0.32 -0.03 16 33 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.56 8.03 -51.93 -0.42 0.14 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 38 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -38.56 372.64 -6.86 -45.42 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -6.51 Total: -6.44 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.71 Total: -0.65 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 1.27 Total: -39.39 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.18 Total: -15.78 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.72 Total: 16.80 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.56 -6.86 -45.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509461148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.420 kcal (2) G-P(sol) polarization free energy of solvation -38.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds