Wall clock time and date at job start Tue Mar 31 2020 22:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47015 * 2 1 4 4 N 1.46496 * 109.46963 * 239.99933 * 2 1 3 5 5 C 1.34768 * 120.00309 * 84.99962 * 4 2 1 6 6 O 1.21618 * 119.99950 * 359.97438 * 5 4 2 7 7 C 1.47233 * 120.00187 * 179.97438 * 5 4 2 8 8 C 1.37011 * 127.19228 * 179.97438 * 7 5 4 9 9 N 1.33314 * 106.37311 * 180.02562 * 8 7 5 10 10 N 1.28518 * 109.44157 * 359.97438 * 9 8 7 11 11 N 1.28715 * 110.63847 * 0.02562 * 10 9 8 12 12 H 0.96991 * 126.03803 * 179.73772 * 11 10 9 13 13 C 1.53001 * 109.46894 * 119.99594 * 2 1 3 14 14 C 1.53951 * 113.74222 * 281.81817 * 13 2 1 15 15 N 1.47810 * 86.03492 * 222.08659 * 14 13 2 16 16 C 1.34774 * 134.45440 * 204.64239 * 15 14 13 17 17 O 1.21285 * 120.00303 * 179.87832 * 16 15 14 18 18 C 1.50697 * 120.00092 * 359.87237 * 16 15 14 19 19 S 1.81003 * 109.47373 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00242 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99487 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.00118 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00159 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99863 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46976 * 90.00569 * 24 22 20 26 26 H 1.48497 * 109.47050 * 210.00080 * 24 22 20 27 27 H 1.48493 * 109.47270 * 330.00463 * 24 22 20 28 28 C 1.47571 * 91.05403 * 24.55508 * 15 14 13 29 29 H 1.09004 * 109.46617 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46877 * 300.07663 * 1 2 3 31 31 H 1.08997 * 109.47272 * 60.08048 * 1 2 3 32 32 H 0.97005 * 119.99650 * 264.99525 * 4 2 1 33 33 H 1.07998 * 126.80823 * 0.02562 * 8 7 5 34 34 H 1.08997 * 112.94826 * 53.41679 * 13 2 1 35 35 H 1.08997 * 113.76776 * 336.35784 * 14 13 2 36 36 H 1.09004 * 113.76244 * 107.75097 * 14 13 2 37 37 H 1.09001 * 109.47252 * 300.00041 * 18 16 15 38 38 H 1.08998 * 109.47261 * 59.99827 * 18 16 15 39 39 H 0.96998 * 120.00393 * 179.97438 * 23 22 20 40 40 H 1.08998 * 113.77123 * 221.15078 * 28 15 14 41 41 H 1.08996 * 113.87930 * 89.76020 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8574 1.1615 -2.4119 7 6 2.6383 -0.7124 -3.5591 8 6 2.8243 -0.1772 -4.8065 9 7 3.2788 -1.1664 -5.5760 10 7 3.3751 -2.2414 -4.8782 11 7 3.0049 -2.0287 -3.6639 12 1 2.9852 -2.6850 -2.9501 13 6 2.0400 -0.7212 1.2493 14 6 1.9745 0.1332 2.5283 15 7 3.3098 -0.4177 2.8417 16 6 4.0082 -0.6110 3.9780 17 8 5.1170 -1.1006 3.9326 18 6 3.4116 -0.2188 5.3051 19 16 4.5842 -0.6002 6.6302 20 6 3.6560 -0.0570 8.0259 21 1 2.6695 0.3607 7.8890 22 6 4.1930 -0.1652 9.3012 23 7 3.4994 0.2401 10.3440 24 14 5.8995 -0.8871 9.5379 25 1 6.9098 0.1993 9.4741 26 1 5.9748 -1.5558 10.8617 27 1 6.1705 -1.8787 8.4663 28 6 3.5702 -0.6728 1.4117 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 2.2491 -1.6318 -1.1525 33 1 2.6394 0.8436 -5.1068 34 1 1.6177 -1.7192 1.3661 35 1 1.9751 1.2067 2.3400 36 1 1.1954 -0.1774 3.2246 37 1 3.1982 0.8501 5.3059 38 1 2.4875 -0.7739 5.4663 39 1 3.8745 0.1642 11.2353 40 1 4.0628 -1.6256 1.2179 41 1 4.0408 0.1624 0.8930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509461148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:12 Heat of formation + Delta-G solvation = 29.955166 kcal Electronic energy + Delta-G solvation = -25673.145202 eV Core-core repulsion = 21716.746897 eV Total energy + Delta-G solvation = -3956.398305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.43959 -41.64794 -40.59061 -39.03698 -36.37886 -34.72103 -34.68816 -33.02164 -32.12846 -31.26097 -28.91906 -27.85374 -27.19904 -25.86250 -24.49728 -23.77079 -22.14185 -21.74545 -20.58220 -20.14231 -19.57376 -18.15295 -17.92412 -17.56543 -17.42741 -17.18225 -16.81732 -16.67732 -16.03447 -15.77708 -15.60606 -15.35481 -15.10637 -14.92520 -14.79257 -14.04510 -13.76355 -13.60145 -13.46557 -13.35603 -13.33349 -13.06778 -12.97974 -12.79873 -12.60002 -12.40290 -11.98542 -11.89467 -11.86193 -11.79498 -11.40325 -11.18932 -10.96892 -10.69948 -10.56522 -10.25913 -9.80241 -9.02976 -8.53101 -6.24683 -0.21763 0.93407 1.17008 1.30047 1.40218 1.41566 1.48192 1.52657 1.80251 1.93740 1.95120 2.23236 2.64809 2.85107 3.16427 3.30031 3.45659 3.60719 3.65933 3.89219 3.99119 4.07677 4.10935 4.17946 4.39791 4.41993 4.45549 4.49692 4.59765 4.61960 4.78009 4.87854 4.91936 5.01542 5.17104 5.33061 5.40798 5.65394 5.69123 6.09617 6.25020 6.51178 6.90015 6.92007 7.03113 7.14514 8.59072 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.001879 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.460005 B =14899.414992 C =15587.019767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.089 0.911 4 N -0.704 5.704 5 C 0.605 3.395 6 O -0.544 6.544 7 C -0.062 4.062 8 C 0.025 3.975 9 N -0.300 5.300 10 N -0.061 5.061 11 N -0.348 5.348 12 H 0.468 0.532 13 C -0.106 4.106 14 C 0.107 3.893 15 N -0.649 5.649 16 C 0.554 3.446 17 O -0.568 6.568 18 C -0.102 4.102 19 S -0.179 6.179 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.047 3.953 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.237 1.237 28 C 0.107 3.893 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.413 0.587 33 H 0.216 0.784 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.277 0.723 40 H 0.085 0.915 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 -3.784 -28.691 30.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.108 0.892 4 N -0.356 5.356 5 C 0.389 3.611 6 O -0.419 6.419 7 C -0.197 4.197 8 C -0.135 4.135 9 N -0.164 5.164 10 N -0.043 5.043 11 N -0.079 5.079 12 H 0.319 0.681 13 C -0.125 4.125 14 C -0.015 4.015 15 N -0.385 5.385 16 C 0.343 3.657 17 O -0.447 6.447 18 C -0.252 4.252 19 S 0.048 5.952 20 C -0.676 4.676 21 H 0.082 0.918 22 C -0.159 4.159 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.161 1.161 28 C -0.015 4.015 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.250 0.750 33 H 0.233 0.767 34 H 0.151 0.849 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.667 -4.604 -29.480 30.573 hybrid contribution -0.899 0.559 1.983 2.248 sum -7.566 -4.046 -27.497 28.805 Atomic orbital electron populations 1.22158 0.93225 1.03520 1.03094 1.20981 0.95255 0.96827 0.81405 0.89248 1.45779 1.66487 1.14570 1.08741 1.16653 0.77346 0.85623 0.81511 1.90900 1.50879 1.15784 1.84370 1.22264 1.12600 0.86117 0.98733 1.24290 0.98978 1.01708 0.88570 1.75026 1.17674 0.96653 1.27077 1.78212 1.16016 1.20613 0.89502 1.45577 1.41497 1.09497 1.11329 0.68071 1.23369 0.94097 1.01917 0.93123 1.23608 0.83205 0.99933 0.94790 1.50024 1.20287 1.62779 1.05426 1.19645 0.84012 0.77454 0.84628 1.90690 1.21089 1.45922 1.87012 1.23174 1.02794 1.05928 0.93346 1.84744 1.27177 1.83396 0.99918 1.22428 1.04976 1.47452 0.92718 0.91842 1.25544 1.01435 0.94342 0.94580 1.70007 1.39464 1.46362 0.99433 0.85883 0.79913 0.80713 0.79960 1.18812 1.18236 1.16131 1.23401 0.97204 1.02557 0.78316 0.90714 0.89873 0.93136 0.75034 0.76691 0.84888 0.87615 0.87749 0.87427 0.86938 0.91334 0.89695 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 9.44 71.98 0.68 -0.09 16 2 C 0.16 0.84 2.29 44.99 0.10 0.95 16 3 H 0.09 0.79 7.48 -2.39 -0.02 0.77 16 4 N -0.70 -2.66 4.94 -446.00 -2.20 -4.86 16 5 C 0.61 6.11 7.77 86.61 0.67 6.78 16 6 O -0.54 -9.69 16.59 -4.09 -0.07 -9.76 16 7 C -0.06 -0.60 7.17 40.41 0.29 -0.31 16 8 C 0.02 0.33 11.87 84.18 1.00 1.32 16 9 N -0.30 -5.18 12.35 -57.50 -0.71 -5.89 16 10 N -0.06 -0.87 13.35 37.02 0.49 -0.38 16 11 N -0.35 -2.23 6.98 -48.52 -0.34 -2.57 16 12 H 0.47 -1.14 8.32 -219.91 -1.83 -2.97 16 13 C -0.11 -0.61 3.35 -10.13 -0.03 -0.65 16 14 C 0.11 1.16 8.08 86.44 0.70 1.86 16 15 N -0.65 -13.75 3.61 -835.96 -3.02 -16.77 16 16 C 0.55 18.63 8.07 87.66 0.71 19.33 16 17 O -0.57 -24.23 16.59 -3.04 -0.05 -24.28 16 18 C -0.10 -3.75 5.91 71.24 0.42 -3.33 16 19 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 20 C -0.53 -30.31 10.04 67.95 0.68 -29.63 16 21 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 22 C 0.05 2.70 5.50 84.86 0.47 3.17 16 23 N -0.91 -54.93 13.97 21.65 0.30 -54.63 16 24 Si 0.91 44.49 27.74 68.60 1.90 46.39 16 25 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 28 C 0.11 1.40 8.27 86.49 0.72 2.12 16 29 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.08 0.30 8.09 -2.38 -0.02 0.28 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.41 -1.03 7.87 -92.70 -0.73 -1.76 16 33 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.11 0.92 8.03 -2.39 -0.02 0.90 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 38 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 39 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 Total: -1.00 -86.04 372.64 0.16 -85.88 By element: Atomic # 1 Polarization: -3.16 SS G_CDS: -1.50 Total: -4.66 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 6.40 Total: 1.53 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -5.47 Total: -85.10 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.12 Total: -34.04 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -86.04 0.16 -85.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509461148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.831 kcal (2) G-P(sol) polarization free energy of solvation -86.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds