Wall clock time and date at job start Tue Mar 31 2020 22:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28517 * 124.44321 * 2 1 4 4 C 1.31139 * 109.05657 * 179.75528 * 3 2 1 5 5 C 1.40921 * 105.77442 * 0.38941 * 4 3 2 6 6 C 1.47806 * 127.23716 * 179.87715 * 5 4 3 7 7 O 1.21561 * 119.99407 * 359.70660 * 6 5 4 8 8 N 1.34773 * 120.00059 * 179.43651 * 6 5 4 9 9 C 1.47014 * 125.65113 * 0.02562 * 8 6 5 10 10 C 1.54322 * 107.27676 * 181.02629 * 9 8 6 11 11 C 1.55159 * 102.93935 * 22.19043 * 10 9 8 12 12 H 1.09004 * 111.00338 * 82.57339 * 11 10 9 13 13 N 1.46504 * 111.00704 * 206.38679 * 11 10 9 14 14 C 1.34776 * 120.00137 * 204.99971 * 13 11 10 15 15 O 1.21280 * 119.99607 * 0.02562 * 14 13 11 16 16 C 1.50695 * 119.99978 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.47126 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00146 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99910 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00286 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99889 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00258 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46814 * 89.99688 * 22 20 18 24 24 H 1.48492 * 109.47308 * 209.99760 * 22 20 18 25 25 H 1.48493 * 109.47016 * 330.00146 * 22 20 18 26 26 C 1.47422 * 125.64459 * 179.71418 * 8 6 5 27 27 N 1.28592 * 124.44160 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47702 * 269.98212 * 1 2 3 29 29 H 1.09002 * 109.47038 * 29.98626 * 1 2 3 30 30 H 1.09006 * 109.46920 * 149.97921 * 1 2 3 31 31 H 1.07999 * 127.11090 * 180.24411 * 4 3 2 32 32 H 1.08998 * 109.88508 * 300.44338 * 9 8 6 33 33 H 1.09002 * 109.88312 * 61.60907 * 9 8 6 34 34 H 1.08995 * 110.72455 * 140.55753 * 10 9 8 35 35 H 1.09002 * 110.71810 * 263.65733 * 10 9 8 36 36 H 0.96994 * 119.99815 * 25.00311 * 13 11 10 37 37 H 1.09004 * 109.47281 * 300.00439 * 16 14 13 38 38 H 1.08998 * 109.47219 * 60.00435 * 16 14 13 39 39 H 0.97000 * 120.00380 * 179.97438 * 21 20 18 40 40 H 1.08994 * 110.37065 * 274.74193 * 26 8 6 41 41 H 1.09000 * 110.36795 * 37.07247 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4563 0.7119 0.0053 5 6 3.4658 -0.6972 -0.0005 6 6 4.6486 -1.5836 -0.0004 7 8 5.7663 -1.1056 -0.0002 8 7 4.4879 -2.9217 0.0051 9 6 3.1997 -3.6301 0.0107 10 6 3.5080 -5.1418 0.0421 11 6 4.9457 -5.1912 0.6235 12 1 4.9294 -5.1303 1.7117 13 7 5.6512 -6.3955 0.1783 14 6 6.6622 -6.8957 0.9159 15 8 6.9877 -6.3491 1.9484 16 6 7.3875 -8.1348 0.4581 17 16 8.6814 -8.5526 1.6529 18 6 9.3479 -9.9945 0.8906 19 1 8.9353 -10.3524 -0.0412 20 6 10.4023 -10.6711 1.4879 21 7 10.9048 -10.2351 2.6237 22 14 11.1085 -12.2002 0.6800 23 1 12.2059 -11.8110 -0.2416 24 1 11.6395 -13.1118 1.7250 25 1 10.0414 -12.8930 -0.0856 26 6 5.5750 -3.9176 -0.0001 27 7 2.1923 -1.0605 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5142 31 1 4.3130 1.3694 0.0104 32 1 2.6266 -3.3502 0.8946 33 1 2.6380 -3.3850 -0.8907 34 1 2.8096 -5.6644 0.6957 35 1 3.4811 -5.5619 -0.9634 36 1 5.3907 -6.8328 -0.6474 37 1 6.6817 -8.9622 0.3832 38 1 7.8384 -7.9525 -0.5173 39 1 11.6415 -10.7081 3.0415 40 1 5.9039 -4.1148 -1.0203 41 1 6.4101 -3.5707 0.6084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523043449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:29 Heat of formation + Delta-G solvation = 53.161396 kcal Electronic energy + Delta-G solvation = -25747.894038 eV Core-core repulsion = 21792.502031 eV Total energy + Delta-G solvation = -3955.392007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.07676 -40.37407 -39.13566 -37.48657 -34.39729 -34.14499 -33.09540 -32.43106 -31.14955 -29.63672 -28.80364 -27.80302 -25.51100 -24.94805 -23.15463 -22.40952 -21.51548 -20.49837 -19.93828 -18.04233 -17.69920 -17.49544 -17.39661 -16.89281 -16.18102 -15.85194 -15.21066 -15.18197 -15.05715 -14.80486 -14.45712 -13.91880 -13.78314 -13.65843 -13.52150 -13.25451 -13.09935 -12.94991 -12.61446 -12.37058 -12.16638 -12.08276 -11.61484 -11.36685 -11.14031 -11.06528 -11.02519 -10.86008 -10.76599 -10.50449 -9.88192 -9.82457 -9.48640 -9.14875 -9.06253 -8.87242 -8.24526 -6.50651 -6.21842 -3.92679 0.89860 1.54039 1.67811 2.47722 2.92734 2.99069 3.04215 3.22490 3.27818 3.31368 3.45193 3.67286 4.06848 4.19944 4.26132 4.41127 4.43460 4.52689 4.65644 4.68542 4.71638 4.92420 5.02862 5.13401 5.15549 5.22630 5.35394 5.43476 5.53309 5.57473 5.61720 5.75699 5.85578 5.87995 5.95143 6.04985 6.11595 6.52330 7.09888 7.58848 7.60943 7.61851 7.82114 8.34835 8.53085 9.23460 10.85544 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036858 B = 0.001797 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.490505 B =15580.773105 C =15971.526254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.145 5.145 3 N -0.291 5.291 4 C 0.038 3.962 5 C -0.041 4.041 6 C 0.622 3.378 7 O -0.521 6.521 8 N -0.604 5.604 9 C 0.112 3.888 10 C -0.140 4.140 11 C 0.137 3.863 12 H 0.109 0.891 13 N -0.729 5.729 14 C 0.534 3.466 15 O -0.512 6.512 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.095 3.905 27 N -0.247 5.247 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.209 0.791 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.370 17.899 -8.994 32.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.048 5.048 3 N -0.131 5.131 4 C -0.146 4.146 5 C -0.204 4.204 6 C 0.408 3.592 7 O -0.395 6.395 8 N -0.338 5.338 9 C -0.011 4.011 10 C -0.179 4.179 11 C 0.030 3.970 12 H 0.127 0.873 13 N -0.383 5.383 14 C 0.320 3.680 15 O -0.385 6.385 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.029 4.029 27 N -0.096 5.096 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.226 0.774 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.236 0.764 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.438 19.114 -7.107 32.602 hybrid contribution 0.697 -1.781 -2.144 2.873 sum -24.741 17.333 -9.250 31.593 Atomic orbital electron populations 1.22270 0.69586 1.06286 1.05470 1.48090 1.09289 0.99330 1.48088 1.74046 1.03834 1.15461 1.19714 1.24875 0.94329 0.93577 1.01811 1.22955 0.91153 0.94714 1.11543 1.16194 0.86078 0.79937 0.77015 1.90864 1.23843 1.74383 1.50389 1.48101 1.08966 1.04401 1.72335 1.22046 0.85390 0.90704 1.02974 1.22987 0.96747 0.95403 1.02744 1.22004 0.90218 0.84033 1.00768 0.87296 1.45879 1.36420 1.28519 1.27480 1.20396 0.78926 0.85146 0.83532 1.90723 1.64044 1.60254 1.23482 1.23532 1.03608 0.96994 1.06288 1.85433 1.34909 1.34708 1.28207 1.22862 1.21385 1.12894 1.11302 0.90901 1.24993 0.95715 0.97985 0.94890 1.70015 1.24424 1.39400 1.16387 0.86164 0.79137 0.81303 0.78872 1.20264 1.20757 1.19716 1.22807 0.90620 0.87395 1.02047 1.74465 1.03008 1.15433 1.16706 0.88726 0.87528 0.87533 0.77386 0.90490 0.90603 0.88990 0.89780 0.76432 0.89095 0.89065 0.92162 0.90549 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.22 11.55 59.85 0.69 0.91 16 2 N -0.15 -1.09 4.35 -16.63 -0.07 -1.17 16 3 N -0.29 -2.64 12.01 30.90 0.37 -2.27 16 4 C 0.04 0.36 12.04 -16.83 -0.20 0.16 16 5 C -0.04 -0.44 7.03 -82.68 -0.58 -1.02 16 6 C 0.62 7.92 7.86 -12.35 -0.10 7.82 16 7 O -0.52 -8.26 17.20 5.31 0.09 -8.17 16 8 N -0.60 -6.67 3.32 -171.51 -0.57 -7.24 16 9 C 0.11 0.88 5.55 -3.07 -0.02 0.86 16 10 C -0.14 -0.97 6.59 -24.90 -0.16 -1.13 16 11 C 0.14 1.48 3.44 -65.65 -0.23 1.26 16 12 H 0.11 1.41 7.54 -51.93 -0.39 1.02 16 13 N -0.73 -8.73 5.20 -51.61 -0.27 -9.00 16 14 C 0.53 9.42 7.85 -10.99 -0.09 9.33 16 15 O -0.51 -11.24 15.50 5.56 0.09 -11.15 16 16 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 17 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 18 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 22 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.09 1.13 6.61 -2.40 -0.02 1.11 16 27 N -0.25 -2.23 9.73 33.42 0.33 -1.90 16 28 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.11 0.05 8.14 -51.93 -0.42 -0.38 16 31 H 0.21 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.08 0.59 7.69 -51.93 -0.40 0.19 16 33 H 0.08 0.53 7.79 -51.93 -0.40 0.13 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.46 8.01 -51.93 -0.42 0.04 16 36 H 0.40 3.52 8.57 -40.82 -0.35 3.17 16 37 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -38.45 370.46 -6.54 -44.99 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.30 Total: -0.51 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.28 Total: 3.70 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.52 Total: -46.92 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.18 Total: -19.32 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.45 -6.54 -44.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523043449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.147 kcal (2) G-P(sol) polarization free energy of solvation -38.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds