Wall clock time and date at job start Tue Mar 31 2020 22:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28517 * 124.44321 * 2 1 4 4 C 1.31139 * 109.05657 * 179.75528 * 3 2 1 5 5 C 1.40921 * 105.77442 * 0.38941 * 4 3 2 6 6 C 1.47806 * 127.23716 * 179.87715 * 5 4 3 7 7 O 1.21561 * 119.99407 * 359.70660 * 6 5 4 8 8 N 1.34773 * 120.00059 * 179.43651 * 6 5 4 9 9 C 1.47014 * 125.65113 * 0.02562 * 8 6 5 10 10 C 1.54322 * 107.27676 * 181.02629 * 9 8 6 11 11 C 1.55159 * 102.93935 * 22.19043 * 10 9 8 12 12 H 1.09004 * 111.00338 * 82.57339 * 11 10 9 13 13 N 1.46504 * 111.00704 * 206.38679 * 11 10 9 14 14 C 1.34776 * 120.00137 * 204.99971 * 13 11 10 15 15 O 1.21280 * 119.99607 * 0.02562 * 14 13 11 16 16 C 1.50695 * 119.99978 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.47126 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00146 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99910 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00286 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99889 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00258 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46814 * 89.99688 * 22 20 18 24 24 H 1.48492 * 109.47308 * 209.99760 * 22 20 18 25 25 H 1.48493 * 109.47016 * 330.00146 * 22 20 18 26 26 C 1.47422 * 125.64459 * 179.71418 * 8 6 5 27 27 N 1.28592 * 124.44160 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47702 * 269.98212 * 1 2 3 29 29 H 1.09002 * 109.47038 * 29.98626 * 1 2 3 30 30 H 1.09006 * 109.46920 * 149.97921 * 1 2 3 31 31 H 1.07999 * 127.11090 * 180.24411 * 4 3 2 32 32 H 1.08998 * 109.88508 * 300.44338 * 9 8 6 33 33 H 1.09002 * 109.88312 * 61.60907 * 9 8 6 34 34 H 1.08995 * 110.72455 * 140.55753 * 10 9 8 35 35 H 1.09002 * 110.71810 * 263.65733 * 10 9 8 36 36 H 0.96994 * 119.99815 * 25.00311 * 13 11 10 37 37 H 1.09004 * 109.47281 * 300.00439 * 16 14 13 38 38 H 1.08998 * 109.47219 * 60.00435 * 16 14 13 39 39 H 0.97000 * 120.00380 * 179.97438 * 21 20 18 40 40 H 1.08994 * 110.37065 * 274.74193 * 26 8 6 41 41 H 1.09000 * 110.36795 * 37.07247 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4563 0.7119 0.0053 5 6 3.4658 -0.6972 -0.0005 6 6 4.6486 -1.5836 -0.0004 7 8 5.7663 -1.1056 -0.0002 8 7 4.4879 -2.9217 0.0051 9 6 3.1997 -3.6301 0.0107 10 6 3.5080 -5.1418 0.0421 11 6 4.9457 -5.1912 0.6235 12 1 4.9294 -5.1303 1.7117 13 7 5.6512 -6.3955 0.1783 14 6 6.6622 -6.8957 0.9159 15 8 6.9877 -6.3491 1.9484 16 6 7.3875 -8.1348 0.4581 17 16 8.6814 -8.5526 1.6529 18 6 9.3479 -9.9945 0.8906 19 1 8.9353 -10.3524 -0.0412 20 6 10.4023 -10.6711 1.4879 21 7 10.9048 -10.2351 2.6237 22 14 11.1085 -12.2002 0.6800 23 1 12.2059 -11.8110 -0.2416 24 1 11.6395 -13.1118 1.7250 25 1 10.0414 -12.8930 -0.0856 26 6 5.5750 -3.9176 -0.0001 27 7 2.1923 -1.0605 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5142 31 1 4.3130 1.3694 0.0104 32 1 2.6266 -3.3502 0.8946 33 1 2.6380 -3.3850 -0.8907 34 1 2.8096 -5.6644 0.6957 35 1 3.4811 -5.5619 -0.9634 36 1 5.3907 -6.8328 -0.6474 37 1 6.6817 -8.9622 0.3832 38 1 7.8384 -7.9525 -0.5173 39 1 11.6415 -10.7081 3.0415 40 1 5.9039 -4.1148 -1.0203 41 1 6.4101 -3.5707 0.6084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523043449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:29 Heat of formation + Delta-G solvation = 22.613725 kcal Electronic energy + Delta-G solvation = -25749.218684 eV Core-core repulsion = 21792.502031 eV Total energy + Delta-G solvation = -3956.716653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.73936 -41.36682 -40.39873 -38.53400 -35.46118 -34.78506 -34.56790 -33.83551 -32.19044 -30.73478 -29.63413 -28.59387 -27.63689 -25.78366 -23.91304 -23.04300 -22.41291 -21.76535 -20.78872 -19.85209 -18.59400 -18.20435 -18.15565 -17.96677 -17.39853 -16.86649 -16.83355 -16.42641 -16.39271 -15.78017 -15.70865 -15.31205 -14.77270 -14.50575 -14.45915 -14.09666 -14.02468 -13.79313 -13.61824 -13.48848 -13.14958 -13.12930 -12.88550 -12.86225 -12.63679 -12.55800 -12.05908 -11.88497 -11.70733 -11.55175 -11.50812 -11.12972 -10.98642 -10.53413 -10.26909 -10.24729 -9.80215 -8.64951 -8.33157 -6.11048 0.13684 0.81994 1.17243 1.27900 1.43655 1.46596 1.55525 1.58547 1.74964 2.03431 2.27840 2.32630 2.77292 3.01161 3.30383 3.35671 3.51010 3.70824 3.92313 3.97408 3.99637 4.17731 4.26189 4.30004 4.33368 4.34692 4.46064 4.54522 4.58468 4.67736 4.75712 4.78331 4.84754 4.95983 5.09578 5.12376 5.43584 5.45236 5.51517 6.21384 6.22250 6.49487 6.78936 7.02907 7.08292 7.23801 8.75981 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036858 B = 0.001797 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.490505 B =15580.773105 C =15971.526254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.132 5.132 3 N -0.299 5.299 4 C 0.029 3.971 5 C -0.065 4.065 6 C 0.617 3.383 7 O -0.567 6.567 8 N -0.603 5.603 9 C 0.111 3.889 10 C -0.121 4.121 11 C 0.136 3.864 12 H 0.085 0.915 13 N -0.698 5.698 14 C 0.536 3.464 15 O -0.563 6.563 16 C -0.129 4.129 17 S -0.156 6.156 18 C -0.545 4.545 19 H 0.085 0.915 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.256 1.256 26 C 0.096 3.904 27 N -0.238 5.238 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.218 0.782 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.423 0.577 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.270 0.730 40 H 0.087 0.913 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.598 16.859 -11.458 35.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.037 5.037 3 N -0.139 5.139 4 C -0.154 4.154 5 C -0.226 4.226 6 C 0.404 3.596 7 O -0.444 6.444 8 N -0.336 5.336 9 C -0.011 4.011 10 C -0.159 4.159 11 C 0.029 3.971 12 H 0.103 0.897 13 N -0.353 5.353 14 C 0.323 3.677 15 O -0.441 6.441 16 C -0.280 4.280 17 S 0.071 5.929 18 C -0.692 4.692 19 H 0.103 0.897 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.180 1.180 26 C -0.028 4.028 27 N -0.089 5.089 28 H 0.130 0.870 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.235 0.765 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.261 0.739 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -28.743 18.064 -9.625 35.286 hybrid contribution 1.486 -1.341 -1.408 2.447 sum -27.257 16.723 -11.033 33.828 Atomic orbital electron populations 1.22842 0.66595 1.08313 1.07277 1.48715 1.10779 0.98585 1.45654 1.74058 1.03665 1.16034 1.20146 1.25103 0.95057 0.93497 1.01733 1.22654 0.91186 0.94774 1.13952 1.16508 0.86184 0.80528 0.76353 1.90826 1.25659 1.75300 1.52641 1.48175 1.10002 1.03993 1.71402 1.22265 0.83914 0.90848 1.04030 1.22999 0.93509 0.94974 1.04427 1.22015 0.92652 0.82681 0.99720 0.89656 1.45520 1.34288 1.28234 1.27245 1.20142 0.79729 0.84591 0.83279 1.90720 1.65858 1.61583 1.25918 1.23369 1.01591 0.98684 1.04347 1.85648 1.38908 1.35611 1.32706 1.23212 1.21618 1.12832 1.11583 0.89703 1.26137 0.96064 1.01669 0.95397 1.70189 1.25176 1.41230 1.18269 0.84949 0.78565 0.76610 0.77831 1.19472 1.20428 1.17997 1.22683 0.90160 0.88098 1.01865 1.74404 1.02307 1.15851 1.16344 0.86963 0.85805 0.85334 0.76522 0.90105 0.88841 0.86889 0.86993 0.73879 0.86645 0.87003 0.92065 0.89519 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.10 11.55 127.77 1.48 1.58 16 2 N -0.13 -1.71 4.35 -206.53 -0.90 -2.61 16 3 N -0.30 -5.05 12.01 -56.16 -0.67 -5.72 16 4 C 0.03 0.55 12.04 85.45 1.03 1.57 16 5 C -0.07 -1.38 7.03 42.24 0.30 -1.08 16 6 C 0.62 16.15 7.86 86.78 0.68 16.83 16 7 O -0.57 -19.16 17.20 -3.91 -0.07 -19.22 16 8 N -0.60 -13.07 3.32 -814.81 -2.71 -15.78 16 9 C 0.11 1.45 5.55 86.73 0.48 1.93 16 10 C -0.12 -1.23 6.59 31.78 0.21 -1.02 16 11 C 0.14 2.78 3.44 46.46 0.16 2.94 16 12 H 0.09 2.23 7.54 -2.38 -0.02 2.21 16 13 N -0.70 -15.32 5.20 -435.58 -2.26 -17.59 16 14 C 0.54 18.71 7.85 87.66 0.69 19.40 16 15 O -0.56 -25.63 15.50 -3.03 -0.05 -25.68 16 16 C -0.13 -4.85 6.16 71.23 0.44 -4.41 16 17 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 18 C -0.54 -30.79 9.50 67.95 0.65 -30.14 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.68 5.49 84.86 0.47 1.14 16 21 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 22 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 26 C 0.10 2.30 6.61 86.94 0.57 2.87 16 27 N -0.24 -3.86 9.73 -48.17 -0.47 -4.33 16 28 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.13 -0.38 8.14 -2.38 -0.02 -0.40 16 31 H 0.22 3.41 8.06 -2.91 -0.02 3.38 16 32 H 0.08 1.04 7.69 -2.39 -0.02 1.02 16 33 H 0.09 0.96 7.79 -2.39 -0.02 0.95 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 0.61 8.01 -2.39 -0.02 0.59 16 36 H 0.42 5.79 8.57 -92.71 -0.79 5.00 16 37 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.05 1.66 8.03 -2.39 -0.02 1.64 16 Total: -1.00 -89.18 370.46 1.45 -87.73 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.28 Total: 11.80 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 7.15 Total: 11.61 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -6.73 Total: -101.93 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.11 Total: -44.90 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -89.18 1.45 -87.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523043449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.340 kcal (2) G-P(sol) polarization free energy of solvation -89.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds