Wall clock time and date at job start Tue Mar 31 2020 22:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28513 * 124.44484 * 2 1 4 4 C 1.31138 * 109.05737 * 179.97438 * 3 2 1 5 5 C 1.40925 * 105.77323 * 0.26446 * 4 3 2 6 6 C 1.47807 * 127.23189 * 179.70542 * 5 4 3 7 7 O 1.21555 * 120.00029 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99660 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00087 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47486 * 179.97438 * 9 8 6 11 11 C 1.31003 * 119.99966 * 124.99501 * 10 9 8 12 12 C 1.50689 * 119.99914 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.47233 * 125.00232 * 12 11 10 14 14 C 1.34773 * 119.99773 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00919 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99583 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47008 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99657 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00609 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99666 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99830 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00114 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47089 * 90.00336 * 22 20 18 24 24 H 1.48500 * 109.47467 * 210.00469 * 22 20 18 25 25 H 1.48499 * 109.47543 * 330.00212 * 22 20 18 26 26 N 1.28588 * 124.43884 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47112 * 90.02086 * 1 2 3 28 28 H 1.08999 * 109.47349 * 210.02744 * 1 2 3 29 29 H 1.09003 * 109.46998 * 330.02797 * 1 2 3 30 30 H 1.08002 * 127.10881 * 179.97438 * 4 3 2 31 31 H 0.96999 * 120.00228 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.47067 * 300.00203 * 9 8 6 33 33 H 1.09003 * 109.47262 * 59.99654 * 9 8 6 34 34 H 1.08000 * 120.00042 * 305.00371 * 10 9 8 35 35 H 1.08000 * 119.99993 * 0.02562 * 11 10 9 36 36 H 1.08999 * 109.47663 * 245.00289 * 12 11 10 37 37 H 1.09001 * 109.47758 * 5.00577 * 12 11 10 38 38 H 0.96992 * 119.99415 * 0.02562 * 13 12 11 39 39 H 1.08999 * 109.47130 * 300.01157 * 16 14 13 40 40 H 1.09005 * 109.47010 * 60.00915 * 16 14 13 41 41 H 0.97000 * 120.00234 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7118 0.0006 5 6 3.4658 -0.6974 -0.0053 6 6 4.6486 -1.5837 -0.0132 7 8 5.7662 -1.1057 -0.0157 8 7 4.4879 -2.9218 -0.0177 9 6 5.6602 -3.8003 -0.0250 10 6 5.2102 -5.2386 -0.0282 11 6 5.6321 -6.0549 -0.9619 12 6 5.1817 -7.4928 -0.9655 13 7 4.5804 -7.8131 -2.2625 14 6 4.1037 -9.0517 -2.4968 15 8 4.1718 -9.9012 -1.6339 16 6 3.4847 -9.3809 -3.8309 17 16 2.9438 -11.1082 -3.8352 18 6 2.2804 -11.2169 -5.4640 19 1 2.2992 -10.3543 -6.1135 20 6 1.7337 -12.4113 -5.9123 21 7 1.2377 -12.4924 -7.1289 22 14 1.7017 -13.9036 -4.7893 23 1 0.4397 -13.9073 -4.0068 24 1 1.7807 -15.1405 -5.6072 25 1 2.8595 -13.8495 -3.8610 26 7 2.1922 -1.0605 0.0005 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 4.3131 1.3694 0.0003 31 1 3.5960 -3.3032 -0.0161 32 1 6.2561 -3.6037 -0.9162 33 1 6.2622 -3.6104 0.8637 34 1 4.5397 -5.5964 0.7392 35 1 6.3029 -5.6972 -1.7291 36 1 6.0394 -8.1428 -0.7923 37 1 4.4453 -7.6450 -0.1763 38 1 4.5263 -7.1338 -2.9528 39 1 2.6267 -8.7312 -4.0036 40 1 4.2206 -9.2284 -4.6204 41 1 0.8559 -13.3272 -7.4424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583080803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:47 Heat of formation + Delta-G solvation = 55.659627 kcal Electronic energy + Delta-G solvation = -24333.516854 eV Core-core repulsion = 20378.233179 eV Total energy + Delta-G solvation = -3955.283676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.17413 -39.95972 -39.33496 -36.75687 -35.03226 -34.36279 -33.41073 -32.72937 -32.45393 -29.99038 -28.80534 -27.58054 -25.64849 -24.92729 -23.42165 -22.63379 -21.10334 -20.69913 -20.02014 -18.41027 -17.92429 -17.53901 -17.43900 -16.62667 -16.32066 -16.09809 -15.67663 -15.40386 -15.29483 -14.98474 -14.64125 -14.24523 -13.94426 -13.84833 -13.62745 -13.51947 -13.26861 -12.87914 -12.82721 -12.71630 -12.43910 -11.94475 -11.61925 -11.56361 -11.28357 -11.02453 -10.98785 -10.80108 -10.63597 -10.08888 -9.99423 -9.85983 -9.58911 -9.42138 -9.04200 -8.98631 -8.52384 -6.93962 -6.30583 -4.02560 0.77768 1.39733 1.44139 1.63806 2.73595 2.78103 2.79745 2.92997 3.30931 3.36204 3.40108 3.49158 3.67657 4.17756 4.24991 4.31580 4.39669 4.43812 4.56276 4.59753 4.68305 4.71008 4.92228 5.08430 5.08469 5.13291 5.18648 5.29721 5.35519 5.45035 5.62223 5.73890 5.81306 5.95153 5.98732 6.10377 6.18585 6.47445 6.93417 7.54775 7.55495 7.67442 7.92426 8.39964 8.43698 9.15512 10.78605 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.001629 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.279473 B =17188.730430 C =18553.420505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.140 5.140 3 N -0.290 5.290 4 C 0.037 3.963 5 C -0.050 4.050 6 C 0.612 3.388 7 O -0.526 6.526 8 N -0.712 5.712 9 C 0.150 3.850 10 C -0.165 4.165 11 C -0.140 4.140 12 C 0.147 3.853 13 N -0.734 5.734 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.249 5.249 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.209 0.791 31 H 0.410 0.590 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.401 0.599 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 27.373 16.201 31.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.043 5.043 3 N -0.129 5.129 4 C -0.147 4.147 5 C -0.213 4.213 6 C 0.395 3.605 7 O -0.400 6.400 8 N -0.364 5.364 9 C 0.027 3.973 10 C -0.184 4.184 11 C -0.159 4.159 12 C 0.024 3.976 13 N -0.389 5.389 14 C 0.317 3.683 15 O -0.394 6.394 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 N -0.098 5.098 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.226 0.774 31 H 0.246 0.754 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.235 0.765 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.482 26.164 17.510 31.580 hybrid contribution 0.113 0.456 -1.148 1.240 sum 2.595 26.619 16.362 31.353 Atomic orbital electron populations 1.22329 0.69315 1.06457 1.05695 1.48082 1.09399 0.99139 1.47713 1.74062 1.03860 1.15421 1.19603 1.24884 0.94350 0.93581 1.01866 1.23010 0.91266 0.94886 1.12100 1.16585 0.86019 0.81423 0.76498 1.90837 1.23774 1.75363 1.50051 1.45811 1.10934 1.05118 1.74488 1.20422 0.87436 0.86090 1.03339 1.22908 1.01475 0.94060 0.99958 1.23065 0.99294 0.95023 0.98535 1.20307 0.98387 0.92461 0.86474 1.45934 1.63354 1.13240 1.16377 1.20307 0.77349 0.81355 0.89328 1.90705 1.55374 1.46896 1.46406 1.23281 1.03533 1.04113 0.96534 1.84792 1.78229 1.06463 1.22072 1.22317 1.45063 1.02195 0.97372 0.89372 1.24719 0.93428 0.98340 0.94854 1.69937 1.37975 1.27377 1.16362 0.86728 0.81151 0.82303 0.81627 1.19214 1.19928 1.15922 1.74369 1.02966 1.15924 1.16494 0.88532 0.87359 0.87397 0.77389 0.75444 0.90388 0.89976 0.86028 0.86112 0.90386 0.90969 0.76500 0.88468 0.88389 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.23 11.55 59.85 0.69 0.92 16 2 N -0.14 -0.99 4.34 -16.63 -0.07 -1.07 16 3 N -0.29 -2.39 12.01 30.90 0.37 -2.02 16 4 C 0.04 0.30 12.04 -16.83 -0.20 0.10 16 5 C -0.05 -0.44 7.21 -82.68 -0.60 -1.04 16 6 C 0.61 5.76 7.83 -12.35 -0.10 5.66 16 7 O -0.53 -6.31 16.95 5.32 0.09 -6.22 16 8 N -0.71 -5.19 5.55 -62.44 -0.35 -5.53 16 9 C 0.15 0.98 6.11 -5.19 -0.03 0.94 16 10 C -0.16 -0.99 9.24 -36.03 -0.33 -1.32 16 11 C -0.14 -0.95 9.24 -36.03 -0.33 -1.28 16 12 C 0.15 1.45 6.11 -5.20 -0.03 1.42 16 13 N -0.73 -8.66 5.55 -61.47 -0.34 -9.01 16 14 C 0.53 9.08 7.85 -10.98 -0.09 8.99 16 15 O -0.52 -10.92 15.86 5.56 0.09 -10.83 16 16 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 17 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 18 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 21 N -0.88 -26.38 13.97 55.49 0.78 -25.61 16 22 Si 0.86 21.63 27.74 -169.99 -4.71 16.91 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.93 6.74 56.52 0.38 -5.54 16 26 N -0.25 -2.06 11.84 33.42 0.40 -1.67 16 27 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.21 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.41 2.54 8.23 -40.82 -0.34 2.21 16 32 H 0.08 0.53 7.79 -51.93 -0.40 0.12 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.12 0.68 7.84 -52.49 -0.41 0.27 16 35 H 0.12 0.70 7.84 -52.49 -0.41 0.29 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.75 7.79 -51.93 -0.40 0.35 16 38 H 0.40 3.64 8.46 -40.82 -0.35 3.30 16 39 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -37.92 381.54 -5.85 -43.78 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.27 Total: 0.72 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.58 Total: 0.34 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.78 Total: -44.90 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.18 Total: -17.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.92 -5.85 -43.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583080803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.437 kcal (2) G-P(sol) polarization free energy of solvation -37.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds