Wall clock time and date at job start Tue Mar 31 2020 22:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34813 * 126.59546 * 2 1 4 4 C 1.36594 * 106.84389 * 180.02562 * 3 2 1 5 5 C 1.47523 * 125.77415 * 179.97438 * 4 3 2 6 6 O 1.21594 * 119.99621 * 0.02562 * 5 4 3 7 7 N 1.34769 * 119.99936 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99974 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47355 * 184.97642 * 8 7 5 10 10 H 1.09003 * 112.78279 * 314.88665 * 9 8 7 11 11 C 1.53755 * 113.55226 * 85.74085 * 9 8 7 12 12 C 1.53500 * 83.25862 * 140.99071 * 11 9 8 13 13 N 1.47070 * 113.46947 * 184.10333 * 9 8 7 14 14 C 1.34769 * 136.05848 * 38.14049 * 13 9 8 15 15 O 1.21288 * 119.99831 * 354.63927 * 14 13 9 16 16 C 1.50698 * 120.00200 * 174.64564 * 14 13 9 17 17 S 1.81004 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00009 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00305 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00055 * 180.27708 * 18 17 16 21 21 N 1.31633 * 119.99584 * 359.72013 * 20 18 17 22 22 Si 1.86800 * 120.00095 * 179.72403 * 20 18 17 23 23 H 1.48498 * 109.47311 * 59.99566 * 22 20 18 24 24 H 1.48501 * 109.47123 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46653 * 299.99683 * 22 20 18 26 26 N 1.34401 * 108.45464 * 0.24814 * 4 3 2 27 27 N 1.28764 * 109.52342 * 359.58395 * 26 4 3 28 28 H 1.08992 * 109.47747 * 89.99570 * 1 2 3 29 29 H 1.09006 * 109.46769 * 210.00071 * 1 2 3 30 30 H 1.09008 * 109.46895 * 329.99086 * 1 2 3 31 31 H 1.08008 * 126.58124 * 0.02562 * 3 2 1 32 32 H 0.97000 * 120.00235 * 359.97438 * 7 5 4 33 33 H 1.08999 * 109.47114 * 64.97644 * 8 7 5 34 34 H 1.08995 * 109.47290 * 304.97639 * 8 7 5 35 35 H 1.08999 * 114.39452 * 27.42469 * 11 9 8 36 36 H 1.09004 * 114.26885 * 254.53986 * 11 9 8 37 37 H 1.08998 * 113.46473 * 218.98786 * 12 11 9 38 38 H 1.08998 * 113.46976 * 88.54857 * 12 11 9 39 39 H 1.08996 * 109.47639 * 59.99297 * 16 14 13 40 40 H 1.09001 * 109.46871 * 299.99064 * 16 14 13 41 41 H 0.96997 * 119.99362 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6208 -0.0006 5 6 4.7704 1.4558 -0.0013 6 8 4.6755 2.6680 -0.0010 7 7 5.9866 0.8750 -0.0024 8 6 7.1943 1.7043 -0.0026 9 6 8.4281 0.8084 -0.1289 10 1 8.3859 -0.0627 0.5249 11 6 8.7921 0.4655 -1.5829 12 6 10.2295 0.6420 -1.0742 13 7 9.6981 1.5449 -0.0420 14 6 10.1695 2.5854 0.6731 15 8 9.4286 3.1986 1.4121 16 6 11.6171 2.9872 0.5544 17 16 11.9392 4.4072 1.6296 18 6 13.6526 4.6561 1.3025 19 1 14.1692 4.0104 0.6079 20 6 14.3400 5.6783 1.9424 21 7 13.7104 6.4650 2.7894 22 14 16.1582 5.9373 1.6016 23 1 16.3556 6.2214 0.1574 24 1 16.6537 7.0847 2.4036 25 1 16.9107 4.7119 1.9723 26 7 3.5239 -0.7229 -0.0065 27 7 2.3009 -1.1257 -0.0007 28 1 -0.3634 0.0001 -1.0275 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5140 31 1 1.9561 2.1162 0.0004 32 1 6.0623 -0.0920 -0.0023 33 1 7.2483 2.2677 0.9289 34 1 7.1599 2.3961 -0.8441 35 1 8.4814 1.2129 -2.3130 36 1 8.5445 -0.5541 -1.8782 37 1 10.8852 1.1385 -1.7894 38 1 10.6622 -0.2730 -0.6696 39 1 11.8358 3.2571 -0.4787 40 1 12.2514 2.1530 0.8541 41 1 14.1907 7.1795 3.2363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584645136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:44 Heat of formation + Delta-G solvation = 72.480051 kcal Electronic energy + Delta-G solvation = -25427.896234 eV Core-core repulsion = 21473.341946 eV Total energy + Delta-G solvation = -3954.554287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.59119 -40.54533 -39.30596 -37.48539 -35.19498 -34.71821 -32.41181 -31.51024 -30.71210 -29.02467 -28.18769 -27.84006 -25.45821 -24.30870 -22.89411 -22.56320 -22.07469 -20.82837 -19.17581 -18.35071 -17.66477 -16.72718 -16.68436 -16.64462 -16.27488 -15.51796 -15.29948 -15.14120 -14.94110 -14.78579 -14.37655 -14.03437 -13.98478 -13.87121 -13.60673 -13.43296 -12.88399 -12.63287 -12.55538 -12.48463 -12.07131 -11.88265 -11.72479 -11.60481 -11.03695 -11.02334 -10.85028 -10.82946 -10.75253 -10.34765 -9.81557 -9.72729 -9.41896 -9.09956 -9.04255 -8.62867 -8.22107 -6.48442 -6.19626 -3.90457 0.71487 1.36296 1.58024 2.54705 2.99450 3.06484 3.12312 3.24972 3.27416 3.30673 3.58959 3.83760 3.90100 4.11565 4.22044 4.36585 4.39839 4.55464 4.62042 4.69433 4.70736 4.85197 4.93113 4.97957 5.15300 5.20487 5.35256 5.37663 5.51018 5.55455 5.68959 5.83871 5.85492 5.87546 6.00171 6.06321 6.16062 6.29392 7.20235 7.55317 7.60924 7.84913 7.98449 8.36742 8.54954 9.25283 10.87742 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028909 B = 0.001828 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.313738 B =15310.385415 C =16060.797078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.364 5.364 3 C 0.095 3.905 4 C -0.100 4.100 5 C 0.604 3.396 6 O -0.531 6.531 7 N -0.710 5.710 8 C 0.113 3.887 9 C 0.123 3.877 10 H 0.097 0.903 11 C -0.152 4.152 12 C 0.101 3.899 13 N -0.646 5.646 14 C 0.561 3.439 15 O -0.509 6.509 16 C -0.144 4.144 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.205 5.205 27 N -0.066 5.066 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.207 0.793 32 H 0.407 0.593 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.240 -17.646 -10.448 31.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.149 5.149 3 C -0.062 4.062 4 C -0.239 4.239 5 C 0.387 3.613 6 O -0.407 6.407 7 N -0.362 5.362 8 C -0.011 4.011 9 C 0.018 3.982 10 H 0.114 0.886 11 C -0.189 4.189 12 C -0.022 4.022 13 N -0.386 5.386 14 C 0.351 3.649 15 O -0.382 6.382 16 C -0.295 4.295 17 S 0.168 5.832 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 N -0.079 5.079 27 N -0.047 5.047 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.224 0.776 32 H 0.242 0.758 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.269 -16.992 -9.073 31.774 hybrid contribution 1.872 -0.017 -0.991 2.119 sum -23.396 -17.009 -10.064 30.627 Atomic orbital electron populations 1.22229 0.72336 1.05954 1.04896 1.50378 1.09235 1.05668 1.49616 1.23424 0.90126 0.95120 0.97527 1.21479 0.94635 0.90370 1.17427 1.16684 0.81638 0.86320 0.76626 1.90868 1.86495 1.13012 1.50285 1.45596 1.05075 1.10897 1.74632 1.21668 0.81415 0.93120 1.04854 1.22818 0.85243 0.93773 0.96316 0.88554 1.23634 0.96286 1.03233 0.95789 1.22893 0.96868 0.93340 0.89118 1.49759 1.14660 1.31469 1.42744 1.20001 0.89434 0.77810 0.77678 1.90727 1.58573 1.51736 1.37146 1.23477 0.93736 1.05909 1.06358 1.85423 1.11931 1.31769 1.54081 1.22823 0.94756 1.19841 1.31047 0.90980 1.24992 0.99215 0.94849 0.94487 1.70012 1.36649 1.17542 1.26036 0.86220 0.82874 0.77903 0.78473 1.19935 1.20801 1.19948 1.74611 1.13019 1.10258 1.10005 1.82004 0.93438 1.06467 1.22769 0.89088 0.87984 0.88228 0.77648 0.75807 0.89129 0.90232 0.88425 0.89148 0.90005 0.89724 0.89318 0.89296 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.11 11.51 59.85 0.69 0.80 16 2 N -0.36 -2.35 4.03 -67.85 -0.27 -2.62 16 3 C 0.10 0.70 11.31 -16.84 -0.19 0.51 16 4 C -0.10 -1.03 6.99 -83.55 -0.58 -1.62 16 5 C 0.60 7.53 7.82 -12.48 -0.10 7.44 16 6 O -0.53 -8.40 16.86 5.28 0.09 -8.31 16 7 N -0.71 -7.74 5.55 -61.36 -0.34 -8.08 16 8 C 0.11 1.46 5.40 -4.04 -0.02 1.44 16 9 C 0.12 1.33 4.09 -72.26 -0.30 1.03 16 10 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.15 -1.17 8.03 -26.08 -0.21 -1.38 16 12 C 0.10 0.95 8.41 -8.50 -0.07 0.88 16 13 N -0.65 -9.15 3.56 -177.27 -0.63 -9.78 16 14 C 0.56 10.97 8.02 -10.99 -0.09 10.89 16 15 O -0.51 -11.94 15.24 5.55 0.08 -11.85 16 16 C -0.14 -3.01 5.99 36.00 0.22 -2.80 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.46 9.50 30.94 0.29 -15.17 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 22 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 N -0.20 -2.19 12.04 32.85 0.40 -1.80 16 27 N -0.07 -0.65 13.78 60.35 0.83 0.19 16 28 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.10 -0.09 8.14 -51.92 -0.42 -0.52 16 31 H 0.21 0.93 8.06 -52.48 -0.42 0.50 16 32 H 0.41 3.51 8.16 -40.82 -0.33 3.17 16 33 H 0.09 1.52 7.05 -51.93 -0.37 1.15 16 34 H 0.08 1.11 7.90 -51.93 -0.41 0.70 16 35 H 0.10 0.79 7.97 -51.93 -0.41 0.38 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 40 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -39.86 376.83 -6.42 -46.28 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.30 Total: -0.78 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.46 Total: 4.06 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.72 Total: -47.79 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.17 Total: -20.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.86 -6.42 -46.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584645136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.763 kcal (2) G-P(sol) polarization free energy of solvation -39.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds