Wall clock time and date at job start Tue Mar 31 2020 22:08:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.45208 * 109.47181 * 2 1
4 4 C 1.34821 * 117.00172 * 180.02562 * 3 2 1
5 5 O 1.21597 * 120.00212 * 359.97438 * 4 3 2
6 6 C 1.46746 * 120.00286 * 180.02562 * 4 3 2
7 7 C 1.41466 * 126.51125 * 0.02562 * 6 4 3
8 8 N 1.30310 * 108.17289 * 179.97438 * 7 6 4
9 9 N 1.39899 * 109.20805 * 359.77620 * 8 7 6
10 10 C 1.46490 * 125.74718 * 180.24523 * 9 8 7
11 11 C 1.50701 * 109.47174 * 271.54868 * 10 9 8
12 12 H 1.07999 * 119.99895 * 359.97438 * 11 10 9
13 13 C 1.37872 * 120.00320 * 179.97438 * 11 10 9
14 14 N 1.31513 * 120.00343 * 179.97438 * 13 11 10
15 15 Si 1.86797 * 119.99967 * 0.02562 * 13 11 10
16 16 H 1.48500 * 109.47341 * 89.99731 * 15 13 11
17 17 H 1.48505 * 109.47166 * 209.99982 * 15 13 11
18 18 H 1.48507 * 109.47019 * 329.99833 * 15 13 11
19 19 C 1.34775 * 108.50698 * 0.37828 * 9 8 7
20 20 N 1.38483 * 126.42840 * 179.90717 * 19 9 8
21 21 C 1.34776 * 119.99733 * 288.63006 * 20 19 9
22 22 O 1.21274 * 120.00270 * 355.63910 * 21 20 19
23 23 C 1.50699 * 120.00259 * 175.63934 * 21 20 19
24 24 H 1.09000 * 109.47345 * 59.99229 * 23 21 20
25 25 C 1.53006 * 109.47135 * 300.00054 * 23 21 20
26 26 C 1.50697 * 109.47520 * 180.02562 * 23 21 20
27 27 O 1.20822 * 119.99850 * 359.97438 * 26 23 21
28 28 O 1.34232 * 120.00105 * 180.02562 * 26 23 21
29 29 H 1.09000 * 109.46910 * 299.99866 * 1 2 3
30 30 H 1.08993 * 109.47182 * 59.99656 * 1 2 3
31 31 H 1.08998 * 109.46986 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.46910 * 240.00134 * 2 1 3
33 33 H 1.08997 * 109.47652 * 120.00334 * 2 1 3
34 34 H 1.08003 * 125.91761 * 359.94657 * 7 6 4
35 35 H 1.09003 * 109.47569 * 31.54821 * 10 9 8
36 36 H 1.08999 * 109.47568 * 151.55009 * 10 9 8
37 37 H 0.96999 * 120.00199 * 179.97438 * 14 13 11
38 38 H 0.97005 * 120.00601 * 108.63158 * 20 19 9
39 39 H 1.09000 * 109.46875 * 300.00332 * 25 23 21
40 40 H 1.09001 * 109.47065 * 59.99940 * 25 23 21
41 41 H 1.09000 * 109.47469 * 179.97438 * 25 23 21
42 42 H 0.96696 * 116.99667 * 179.97438 * 28 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3506 1.5457 -0.0005
5 8 4.0914 0.5814 -0.0005
6 6 3.9115 2.9017 0.0000
7 6 3.1826 4.1141 0.0016
8 7 4.0343 5.1004 0.0021
9 7 5.3350 4.5853 0.0061
10 6 6.5684 5.3756 0.0130
11 6 6.9764 5.6824 -1.4050
12 1 6.3770 5.3241 -2.2288
13 6 8.1147 6.4205 -1.6505
14 7 8.4710 6.6878 -2.8879
15 14 9.1518 7.0397 -0.2256
16 1 10.1822 6.0257 0.1141
17 1 9.8161 8.3103 -0.6123
18 1 8.2814 7.2753 0.9544
19 6 5.2622 3.2396 -0.0004
20 7 6.3304 2.3583 -0.0010
21 6 7.0911 2.2222 -1.1053
22 8 6.7938 2.8112 -2.1228
23 6 8.3112 1.3381 -1.0757
24 1 8.0147 0.3177 -0.8327
25 6 9.2874 1.8516 -0.0153
26 6 8.9800 1.3595 -2.4259
27 8 8.5136 2.0241 -3.3206
28 8 10.0934 0.6395 -2.6348
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5139 0.8899
34 1 2.1065 4.2064 0.0018
35 1 6.3997 6.3078 0.5522
36 1 7.3599 4.8098 0.5043
37 1 9.2717 7.2074 -3.0606
38 1 6.5312 1.8388 0.7932
39 1 9.5839 2.8720 -0.2581
40 1 8.8039 1.8364 0.9615
41 1 10.1697 1.2119 0.0065
42 1 10.4863 0.6847 -3.5172
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001591269410.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:08:26
Heat of formation + Delta-G solvation = -123.880081 kcal
Electronic energy + Delta-G solvation = -30748.405726 eV
Core-core repulsion = 26310.291002 eV
Total energy + Delta-G solvation = -4438.114724 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.135 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.31883 -40.34351 -39.64703 -38.64006 -36.23811 -35.78822 -34.47943 -33.81092
-33.31489 -32.01987 -31.55220 -29.09314 -27.96727 -25.44221 -24.35989 -23.09998
-22.77316 -22.13945 -20.69266 -20.22799 -19.50258 -17.83913 -17.74976 -17.23121
-17.04485 -16.61304 -16.33209 -16.21575 -15.81358 -15.48735 -14.70380 -14.61708
-14.35464 -13.99964 -13.85557 -13.51298 -13.43478 -13.27010 -13.08358 -12.80918
-12.52627 -12.32323 -12.24814 -12.19065 -11.91188 -11.71151 -11.63699 -11.19789
-11.17250 -10.99255 -10.77127 -10.43403 -10.39211 -10.21500 -9.99927 -9.67573
-9.50750 -9.27389 -8.73544 -8.68208 -8.20435 -6.17318 -4.20397 1.60281
2.40036 2.50306 2.62219 2.83819 2.92371 3.09369 3.16724 3.18436
3.25640 3.51718 3.64896 4.21697 4.58144 4.84511 4.87593 4.87683
4.95084 4.97237 5.10701 5.21155 5.23878 5.35664 5.50118 5.56601
5.62037 5.69324 5.73260 5.84907 6.00083 6.05927 6.15682 6.34254
6.51175 6.64076 6.72188 6.88613 7.23711 7.37150 7.51516 8.04174
8.15182 8.17997 8.32189 8.51118 8.99186 9.33932 10.95027
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.010458 B = 0.004732 C = 0.003607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2676.732308 B = 5915.545378 C = 7761.489570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.065 3.935
3 O -0.356 6.356
4 C 0.553 3.447
5 O -0.529 6.529
6 C -0.305 4.305
7 C 0.091 3.909
8 N -0.274 5.274
9 N -0.300 5.300
10 C 0.224 3.776
11 C -0.531 4.531
12 H 0.093 0.907
13 C 0.083 3.917
14 N -0.875 5.875
15 Si 0.861 3.139
16 H -0.273 1.273
17 H -0.278 1.278
18 H -0.264 1.264
19 C 0.391 3.609
20 N -0.658 5.658
21 C 0.513 3.487
22 O -0.427 6.427
23 C -0.092 4.092
24 H 0.133 0.867
25 C -0.144 4.144
26 C 0.472 3.528
27 O -0.449 6.449
28 O -0.523 6.523
29 H 0.066 0.934
30 H 0.066 0.934
31 H 0.076 0.924
32 H 0.067 0.933
33 H 0.066 0.934
34 H 0.192 0.808
35 H 0.058 0.942
36 H 0.040 0.960
37 H 0.266 0.734
38 H 0.415 0.585
39 H 0.074 0.926
40 H 0.075 0.925
41 H 0.082 0.918
42 H 0.410 0.590
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.528 -15.029 9.818 18.514
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.009 4.009
3 O -0.273 6.273
4 C 0.400 3.600
5 O -0.419 6.419
6 C -0.321 4.321
7 C -0.096 4.096
8 N -0.095 5.095
9 N -0.079 5.079
10 C 0.106 3.894
11 C -0.569 4.569
12 H 0.110 0.890
13 C -0.121 4.121
14 N -0.511 5.511
15 Si 0.687 3.313
16 H -0.199 1.199
17 H -0.203 1.203
18 H -0.189 1.189
19 C 0.162 3.838
20 N -0.315 5.315
21 C 0.295 3.705
22 O -0.291 6.291
23 C -0.115 4.115
24 H 0.151 0.849
25 C -0.202 4.202
26 C 0.309 3.691
27 O -0.330 6.330
28 O -0.337 6.337
29 H 0.085 0.915
30 H 0.086 0.914
31 H 0.094 0.906
32 H 0.085 0.915
33 H 0.085 0.915
34 H 0.209 0.791
35 H 0.076 0.924
36 H 0.058 0.942
37 H 0.077 0.923
38 H 0.254 0.746
39 H 0.093 0.907
40 H 0.094 0.906
41 H 0.101 0.899
42 H 0.269 0.731
Dipole moment (debyes) X Y Z Total
from point charges -4.402 -13.197 8.989 16.563
hybrid contribution 1.025 -0.856 0.412 1.398
sum -3.377 -14.054 9.401 17.242
Atomic orbital electron populations
1.21793 0.92924 1.02637 1.03534 1.22916 0.95004 0.80674 1.02322
1.86553 1.24196 1.31566 1.85000 1.19756 0.79967 0.88370 0.71936
1.90781 1.60295 1.42356 1.48488 1.18790 0.91178 0.91791 1.30341
1.23869 0.99973 0.88419 0.97309 1.77268 0.86545 1.22078 1.23635
1.49481 1.07442 1.03168 1.47774 1.20229 0.76931 0.91273 1.00999
1.21073 1.10970 1.35172 0.89666 0.88951 1.24738 0.96699 0.95346
0.95359 1.69881 1.24748 1.37956 1.18565 0.87119 0.81394 0.79534
0.83286 1.19872 1.20349 1.18896 1.17527 0.87023 0.82616 0.96663
1.42275 1.29905 1.42253 1.17069 1.19871 0.83815 0.83169 0.83645
1.91050 1.67722 1.41132 1.29171 1.20729 0.94760 1.02955 0.93025
0.84914 1.21778 0.98559 1.03295 0.96562 1.22467 0.79039 0.77268
0.90277 1.90976 1.61746 1.36373 1.43945 1.84428 1.41378 1.66829
1.41034 0.91530 0.91449 0.90552 0.91498 0.91524 0.79081 0.92448
0.94217 0.92318 0.74602 0.90704 0.90643 0.89937 0.73113
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.19 10.29 37.16 0.38 -0.80 16
2 C 0.06 0.71 6.20 37.16 0.23 0.94 16
3 O -0.36 -5.08 10.07 -40.82 -0.41 -5.49 16
4 C 0.55 9.32 7.94 34.17 0.27 9.60 16
5 O -0.53 -9.42 16.09 -19.34 -0.31 -9.73 16
6 C -0.31 -5.58 6.15 -104.86 -0.64 -6.22 16
7 C 0.09 1.59 11.86 -16.97 -0.20 1.39 16
8 N -0.27 -5.73 12.47 30.88 0.39 -5.34 16
9 N -0.30 -6.58 3.58 -61.13 -0.22 -6.80 16
10 C 0.22 5.26 5.12 -5.20 -0.03 5.23 16
11 C -0.53 -15.08 8.83 -34.44 -0.30 -15.38 16
12 H 0.09 3.10 7.59 -52.49 -0.40 2.70 16
13 C 0.08 2.36 5.47 -17.82 -0.10 2.27 16
14 N -0.87 -26.93 13.96 55.43 0.77 -26.16 16
15 Si 0.86 20.01 27.47 -169.99 -4.67 15.34 16
16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16
18 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16
19 C 0.39 7.72 6.48 -153.42 -0.99 6.72 16
20 N -0.66 -11.18 4.30 -11.08 -0.05 -11.23 16
21 C 0.51 9.85 7.05 -10.99 -0.08 9.77 16
22 O -0.43 -10.86 12.54 -18.95 -0.24 -11.10 16
23 C -0.09 -1.32 3.16 -92.92 -0.29 -1.61 16
24 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16
25 C -0.14 -1.69 9.02 37.16 0.34 -1.35 16
26 C 0.47 7.90 7.62 36.00 0.27 8.17 16
27 O -0.45 -10.14 14.94 -26.86 -0.40 -10.55 16
28 O -0.52 -6.38 13.33 -39.26 -0.52 -6.90 16
29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.19 2.53 8.06 -52.48 -0.42 2.11 16
35 H 0.06 1.33 7.20 -51.93 -0.37 0.96 16
36 H 0.04 0.86 7.47 -51.93 -0.39 0.47 16
37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16
38 H 0.42 5.27 8.38 -40.82 -0.34 4.92 16
39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
40 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16
41 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16
42 H 0.41 3.48 9.10 45.56 0.41 3.89 16
LS Contribution 373.55 15.07 5.63 5.63
Total: -1.00 -39.73 373.55 -5.63 -45.36
By element:
Atomic # 1 Polarization: 12.70 SS G_CDS: -4.46 Total: 8.25 kcal
Atomic # 6 Polarization: 19.86 SS G_CDS: -1.15 Total: 18.71 kcal
Atomic # 7 Polarization: -50.42 SS G_CDS: 0.89 Total: -49.52 kcal
Atomic # 8 Polarization: -41.88 SS G_CDS: -1.88 Total: -43.76 kcal
Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -39.73 -5.63 -45.36 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001591269410.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.521 kcal
(2) G-P(sol) polarization free energy of solvation -39.726 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.880 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds