Wall clock time and date at job start Tue Mar 31 2020 22:08:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.45208 * 109.47181 * 2 1
4 4 C 1.34821 * 117.00172 * 180.02562 * 3 2 1
5 5 O 1.21597 * 120.00212 * 359.97438 * 4 3 2
6 6 C 1.46746 * 120.00286 * 180.02562 * 4 3 2
7 7 C 1.41466 * 126.51125 * 0.02562 * 6 4 3
8 8 N 1.30310 * 108.17289 * 179.97438 * 7 6 4
9 9 N 1.39899 * 109.20805 * 359.77620 * 8 7 6
10 10 C 1.46490 * 125.74718 * 180.24523 * 9 8 7
11 11 C 1.50701 * 109.47174 * 271.54868 * 10 9 8
12 12 H 1.07999 * 119.99895 * 359.97438 * 11 10 9
13 13 C 1.37872 * 120.00320 * 179.97438 * 11 10 9
14 14 N 1.31513 * 120.00343 * 179.97438 * 13 11 10
15 15 Si 1.86797 * 119.99967 * 0.02562 * 13 11 10
16 16 H 1.48500 * 109.47341 * 89.99731 * 15 13 11
17 17 H 1.48505 * 109.47166 * 209.99982 * 15 13 11
18 18 H 1.48507 * 109.47019 * 329.99833 * 15 13 11
19 19 C 1.34775 * 108.50698 * 0.37828 * 9 8 7
20 20 N 1.38483 * 126.42840 * 179.90717 * 19 9 8
21 21 C 1.34776 * 119.99733 * 288.63006 * 20 19 9
22 22 O 1.21274 * 120.00270 * 355.63910 * 21 20 19
23 23 C 1.50699 * 120.00259 * 175.63934 * 21 20 19
24 24 H 1.09000 * 109.47345 * 59.99229 * 23 21 20
25 25 C 1.53006 * 109.47135 * 300.00054 * 23 21 20
26 26 C 1.50697 * 109.47520 * 180.02562 * 23 21 20
27 27 O 1.20822 * 119.99850 * 359.97438 * 26 23 21
28 28 O 1.34232 * 120.00105 * 180.02562 * 26 23 21
29 29 H 1.09000 * 109.46910 * 299.99866 * 1 2 3
30 30 H 1.08993 * 109.47182 * 59.99656 * 1 2 3
31 31 H 1.08998 * 109.46986 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.46910 * 240.00134 * 2 1 3
33 33 H 1.08997 * 109.47652 * 120.00334 * 2 1 3
34 34 H 1.08003 * 125.91761 * 359.94657 * 7 6 4
35 35 H 1.09003 * 109.47569 * 31.54821 * 10 9 8
36 36 H 1.08999 * 109.47568 * 151.55009 * 10 9 8
37 37 H 0.96999 * 120.00199 * 179.97438 * 14 13 11
38 38 H 0.97005 * 120.00601 * 108.63158 * 20 19 9
39 39 H 1.09000 * 109.46875 * 300.00332 * 25 23 21
40 40 H 1.09001 * 109.47065 * 59.99940 * 25 23 21
41 41 H 1.09000 * 109.47469 * 179.97438 * 25 23 21
42 42 H 0.96696 * 116.99667 * 179.97438 * 28 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3506 1.5457 -0.0005
5 8 4.0914 0.5814 -0.0005
6 6 3.9115 2.9017 0.0000
7 6 3.1826 4.1141 0.0016
8 7 4.0343 5.1004 0.0021
9 7 5.3350 4.5853 0.0061
10 6 6.5684 5.3756 0.0130
11 6 6.9764 5.6824 -1.4050
12 1 6.3770 5.3241 -2.2288
13 6 8.1147 6.4205 -1.6505
14 7 8.4710 6.6878 -2.8879
15 14 9.1518 7.0397 -0.2256
16 1 10.1822 6.0257 0.1141
17 1 9.8161 8.3103 -0.6123
18 1 8.2814 7.2753 0.9544
19 6 5.2622 3.2396 -0.0004
20 7 6.3304 2.3583 -0.0010
21 6 7.0911 2.2222 -1.1053
22 8 6.7938 2.8112 -2.1228
23 6 8.3112 1.3381 -1.0757
24 1 8.0147 0.3177 -0.8327
25 6 9.2874 1.8516 -0.0153
26 6 8.9800 1.3595 -2.4259
27 8 8.5136 2.0241 -3.3206
28 8 10.0934 0.6395 -2.6348
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5139 0.8899
34 1 2.1065 4.2064 0.0018
35 1 6.3997 6.3078 0.5522
36 1 7.3599 4.8098 0.5043
37 1 9.2717 7.2074 -3.0606
38 1 6.5312 1.8388 0.7932
39 1 9.5839 2.8720 -0.2581
40 1 8.8039 1.8364 0.9615
41 1 10.1697 1.2119 0.0065
42 1 10.4863 0.6847 -3.5172
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001591269410.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:08:26
Heat of formation + Delta-G solvation = -154.525883 kcal
Electronic energy + Delta-G solvation = -30749.734628 eV
Core-core repulsion = 26310.291002 eV
Total energy + Delta-G solvation = -4439.443625 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.135 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.79869 -41.70311 -40.90828 -40.08424 -37.46419 -37.06660 -36.03901 -35.67848
-34.54949 -33.78899 -32.53600 -30.52570 -29.80879 -26.55141 -25.80312 -24.48392
-24.29895 -23.30723 -22.09179 -21.54890 -21.02970 -19.31210 -19.18300 -19.05183
-18.46415 -17.94351 -17.53269 -17.39778 -17.20306 -16.79979 -16.51836 -16.16155
-15.77241 -15.36978 -15.30748 -14.80365 -14.73725 -14.56214 -14.45260 -14.33253
-13.97987 -13.52534 -13.50220 -13.17880 -13.14177 -12.84577 -12.80671 -12.67703
-12.49222 -12.48045 -12.29194 -12.15527 -11.81496 -11.55113 -11.42079 -11.38075
-11.08253 -10.88759 -10.80172 -10.30183 -9.73450 -8.34398 -6.44939 0.12561
0.97971 1.18654 1.21904 1.26698 1.33164 1.41208 1.50035 1.62389
1.92195 2.16326 2.24587 2.31705 2.94258 3.30430 3.60541 3.79431
3.87872 3.95923 4.10508 4.13991 4.17717 4.30244 4.37905 4.42399
4.47693 4.67510 4.72939 4.75654 4.92617 4.96361 5.01194 5.15970
5.17529 5.21012 5.43975 5.51595 5.62531 5.77275 6.18207 6.19671
6.55353 6.65887 6.85931 6.96982 7.13087 7.16100 8.83370
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.010458 B = 0.004732 C = 0.003607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2676.732308 B = 5915.545378 C = 7761.489570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.056 3.944
3 O -0.354 6.354
4 C 0.556 3.444
5 O -0.540 6.540
6 C -0.311 4.311
7 C 0.107 3.893
8 N -0.311 5.311
9 N -0.325 5.325
10 C 0.235 3.765
11 C -0.529 4.529
12 H 0.021 0.979
13 C 0.016 3.984
14 N -0.938 5.938
15 Si 0.943 3.057
16 H -0.251 1.251
17 H -0.280 1.280
18 H -0.235 1.235
19 C 0.380 3.620
20 N -0.642 5.642
21 C 0.506 3.494
22 O -0.501 6.501
23 C -0.085 4.085
24 H 0.182 0.818
25 C -0.140 4.140
26 C 0.475 3.525
27 O -0.522 6.522
28 O -0.501 6.501
29 H 0.072 0.928
30 H 0.064 0.936
31 H 0.101 0.899
32 H 0.061 0.939
33 H 0.076 0.924
34 H 0.233 0.767
35 H 0.064 0.936
36 H 0.065 0.935
37 H 0.268 0.732
38 H 0.437 0.563
39 H 0.039 0.961
40 H 0.109 0.891
41 H 0.114 0.886
42 H 0.427 0.573
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.372 -17.154 13.588 22.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.018 4.018
3 O -0.271 6.271
4 C 0.403 3.597
5 O -0.431 6.431
6 C -0.326 4.326
7 C -0.079 4.079
8 N -0.131 5.131
9 N -0.104 5.104
10 C 0.116 3.884
11 C -0.568 4.568
12 H 0.039 0.961
13 C -0.183 4.183
14 N -0.577 5.577
15 Si 0.763 3.237
16 H -0.175 1.175
17 H -0.205 1.205
18 H -0.158 1.158
19 C 0.151 3.849
20 N -0.301 5.301
21 C 0.292 3.708
22 O -0.369 6.369
23 C -0.107 4.107
24 H 0.199 0.801
25 C -0.197 4.197
26 C 0.316 3.684
27 O -0.409 6.409
28 O -0.314 6.314
29 H 0.091 0.909
30 H 0.083 0.917
31 H 0.120 0.880
32 H 0.080 0.920
33 H 0.094 0.906
34 H 0.249 0.751
35 H 0.082 0.918
36 H 0.082 0.918
37 H 0.077 0.923
38 H 0.280 0.720
39 H 0.059 0.941
40 H 0.127 0.873
41 H 0.133 0.867
42 H 0.289 0.711
Dipole moment (debyes) X Y Z Total
from point charges -4.253 -15.402 12.833 20.494
hybrid contribution 0.819 -0.387 -0.865 1.253
sum -3.433 -15.789 11.968 20.108
Atomic orbital electron populations
1.21821 0.90299 1.04362 1.03728 1.23301 0.97009 0.78893 1.02563
1.86543 1.22364 1.33845 1.84322 1.19520 0.80902 0.87497 0.71740
1.90762 1.60892 1.42470 1.49016 1.19080 0.90870 0.93053 1.29646
1.24542 1.01357 0.87348 0.94699 1.77202 0.86708 1.23721 1.25510
1.49287 1.07295 1.03865 1.49948 1.19918 0.78500 0.92336 0.97650
1.21022 1.10385 1.34780 0.90571 0.96097 1.25860 0.98213 0.95256
0.98924 1.70104 1.25834 1.39643 1.22109 0.85825 0.79599 0.78936
0.79343 1.17462 1.20486 1.15759 1.17957 0.88456 0.82377 0.96089
1.42264 1.28849 1.41480 1.17504 1.20858 0.84635 0.82528 0.82809
1.91051 1.69669 1.44276 1.31930 1.20915 0.92944 1.04311 0.92548
0.80096 1.21875 0.99296 1.01709 0.96821 1.23035 0.79105 0.75858
0.90433 1.90976 1.63932 1.39600 1.46347 1.84383 1.39523 1.65135
1.42406 0.90858 0.91718 0.88039 0.92016 0.90593 0.75111 0.91783
0.91769 0.92285 0.72024 0.94125 0.87267 0.86700 0.71139
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.86 10.29 71.98 0.74 -1.12 16
2 C 0.06 1.10 6.20 71.98 0.45 1.54 16
3 O -0.35 -9.43 10.07 -57.33 -0.58 -10.01 16
4 C 0.56 18.04 7.94 70.05 0.56 18.59 16
5 O -0.54 -18.39 16.09 19.52 0.31 -18.08 16
6 C -0.31 -11.18 6.15 -20.02 -0.12 -11.30 16
7 C 0.11 3.66 11.86 85.71 1.02 4.68 16
8 N -0.31 -13.11 12.47 -56.22 -0.70 -13.81 16
9 N -0.33 -14.47 3.58 -347.32 -1.24 -15.72 16
10 C 0.24 11.13 5.12 85.64 0.44 11.57 16
11 C -0.53 -31.71 8.83 25.60 0.23 -31.48 16
12 H 0.02 1.52 7.59 -2.91 -0.02 1.50 16
13 C 0.02 0.96 5.47 84.65 0.46 1.42 16
14 N -0.94 -61.22 13.96 21.45 0.30 -60.92 16
15 Si 0.94 41.45 27.47 68.60 1.88 43.34 16
16 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16
17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16
18 H -0.23 -9.13 6.54 99.48 0.65 -8.48 16
19 C 0.38 14.99 6.48 132.54 0.86 15.85 16
20 N -0.64 -21.28 4.30 -307.35 -1.32 -22.60 16
21 C 0.51 19.65 7.05 87.66 0.62 20.27 16
22 O -0.50 -27.11 12.54 20.43 0.26 -26.86 16
23 C -0.09 -2.30 3.16 -12.29 -0.04 -2.33 16
24 H 0.18 3.09 8.14 -2.39 -0.02 3.07 16
25 C -0.14 -2.81 9.02 71.98 0.65 -2.16 16
26 C 0.48 15.89 7.62 71.23 0.54 16.43 16
27 O -0.52 -25.06 14.94 29.73 0.44 -24.61 16
28 O -0.50 -11.33 13.33 -51.43 -0.69 -12.01 16
29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16
32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
34 H 0.23 5.63 8.06 -2.91 -0.02 5.60 16
35 H 0.06 2.92 7.20 -2.39 -0.02 2.91 16
36 H 0.06 2.70 7.47 -2.39 -0.02 2.68 16
37 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16
38 H 0.44 9.99 8.38 -92.70 -0.78 9.21 16
39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16
40 H 0.11 1.46 7.67 -2.39 -0.02 1.44 16
41 H 0.11 1.61 8.11 -2.39 -0.02 1.59 16
42 H 0.43 6.77 9.10 -74.06 -0.67 6.10 16
Total: -1.00 -97.69 373.55 4.65 -93.04
By element:
Atomic # 1 Polarization: 26.71 SS G_CDS: -0.41 Total: 26.29 kcal
Atomic # 6 Polarization: 35.55 SS G_CDS: 6.39 Total: 41.95 kcal
Atomic # 7 Polarization: -110.08 SS G_CDS: -2.97 Total: -113.05 kcal
Atomic # 8 Polarization: -91.32 SS G_CDS: -0.25 Total: -91.57 kcal
Atomic # 14 Polarization: 41.45 SS G_CDS: 1.88 Total: 43.34 kcal
Total: -97.69 4.65 -93.04 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001591269410.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.488 kcal
(2) G-P(sol) polarization free energy of solvation -97.692 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.180 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.038 kcal
(6) G-S(sol) free energy of system = (1) + (5) -154.526 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds