Wall clock time and date at job start Tue Mar 31 2020 22:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 114.00129 * 2 1 4 4 C 1.52997 * 109.47021 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46928 * 184.86347 * 4 3 2 6 6 N 1.46504 * 109.47422 * 184.85459 * 5 4 3 7 7 N 1.28387 * 119.09857 * 267.47663 * 6 5 4 8 8 C 1.31471 * 122.25378 * 180.27126 * 7 6 5 9 9 C 1.47747 * 119.90111 * 179.74053 * 8 7 6 10 10 O 1.21602 * 120.00165 * 186.18968 * 9 8 7 11 11 N 1.34778 * 119.99794 * 6.19429 * 9 8 7 12 12 C 1.36836 * 119.99728 * 186.00670 * 11 9 8 13 13 H 1.08002 * 119.99696 * 215.68017 * 12 11 9 14 14 C 1.39061 * 120.00596 * 35.67969 * 12 11 9 15 15 N 1.31353 * 119.99911 * 18.83468 * 14 12 11 16 16 Si 1.86800 * 120.00367 * 198.84391 * 14 12 11 17 17 H 1.48503 * 109.46799 * 4.99995 * 16 14 12 18 18 H 1.48500 * 109.47618 * 124.99947 * 16 14 12 19 19 H 1.48497 * 109.46917 * 245.00327 * 16 14 12 20 20 C 1.46495 * 120.00288 * 6.00053 * 11 9 8 21 21 C 1.50703 * 109.47220 * 273.39458 * 20 11 9 22 22 O 1.20829 * 119.99991 * 359.97438 * 21 20 11 23 23 O 1.34229 * 119.99929 * 179.97438 * 21 20 11 24 24 C 1.41631 * 120.20191 * 359.46721 * 8 7 6 25 25 C 1.36303 * 118.23526 * 0.25237 * 24 8 7 26 26 C 1.34603 * 119.09617 * 87.20973 * 6 5 4 27 27 O 1.21975 * 120.22311 * 0.03052 * 26 6 5 28 28 H 1.08997 * 109.46996 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46645 * 300.00774 * 1 2 3 30 30 H 1.08997 * 109.47003 * 60.00308 * 1 2 3 31 31 H 1.08996 * 109.47056 * 59.99433 * 3 2 1 32 32 H 1.09006 * 109.46423 * 299.99655 * 3 2 1 33 33 H 1.08999 * 109.47153 * 64.86117 * 4 3 2 34 34 H 1.08996 * 109.47276 * 304.86038 * 4 3 2 35 35 H 1.08999 * 109.47283 * 64.85389 * 5 4 3 36 36 H 1.09000 * 109.47363 * 304.85487 * 5 4 3 37 37 H 0.96997 * 120.00221 * 184.94375 * 15 14 12 38 38 H 1.09001 * 109.47033 * 33.39055 * 20 11 9 39 39 H 1.08994 * 109.47357 * 153.38845 * 20 11 9 40 40 H 0.96706 * 117.00070 * 179.97438 * 23 21 20 41 41 H 1.08004 * 120.88609 * 180.27033 * 24 8 7 42 42 H 1.07995 * 121.03158 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1575 2.5771 0.1217 6 7 5.6141 2.4734 0.0047 7 7 6.3185 2.3451 1.0704 8 6 7.6295 2.2520 1.0380 9 6 8.3893 2.1115 2.2973 10 8 9.6049 2.1383 2.2803 11 7 7.7350 1.9534 3.4650 12 6 8.4305 1.9465 4.6434 13 1 8.1171 1.3024 5.4516 14 6 9.5409 2.7689 4.8004 15 7 9.7136 3.7984 4.0031 16 14 10.7870 2.4094 6.1447 17 1 10.4314 1.1362 6.8215 18 1 12.1408 2.2904 5.5461 19 1 10.7793 3.5155 7.1354 20 6 6.2794 1.7890 3.4726 21 6 5.6208 3.1444 3.4930 22 8 6.2981 4.1450 3.5009 23 8 4.2820 3.2400 3.5024 24 6 8.3153 2.2802 -0.2009 25 6 7.5809 2.4106 -1.3417 26 6 6.1769 2.5098 -1.2175 27 8 5.4796 2.6283 -2.2112 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8629 0.7209 -0.9312 34 1 3.8517 0.5702 0.8423 35 1 3.9004 3.0061 1.0901 36 1 3.7739 3.2174 -0.6727 37 1 10.5228 4.3296 4.0653 38 1 5.9701 1.2483 2.5781 39 1 5.9818 1.2271 4.3579 40 1 3.9055 4.1306 3.5159 41 1 9.3917 2.2002 -0.2407 42 1 8.0573 2.4368 -2.3106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599230411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:11 Heat of formation + Delta-G solvation = -126.428772 kcal Electronic energy + Delta-G solvation = -31131.379207 eV Core-core repulsion = 26693.153964 eV Total energy + Delta-G solvation = -4438.225243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.22243 -41.14006 -40.00460 -38.92725 -38.71086 -36.88986 -36.58713 -35.93549 -34.04313 -33.64732 -32.08064 -29.26275 -28.65490 -27.33467 -26.62392 -25.61922 -24.58112 -23.17373 -22.72588 -21.73174 -19.94588 -18.99725 -18.82078 -18.16975 -17.85201 -17.68000 -17.50592 -17.22436 -17.07106 -16.72647 -16.53698 -16.36945 -15.76970 -15.65804 -15.15336 -15.06812 -14.97161 -14.74490 -14.25262 -14.11684 -13.75987 -13.56135 -13.35071 -13.24449 -13.08948 -12.80174 -12.75624 -12.61963 -12.32511 -12.18381 -12.06048 -12.01218 -11.95349 -11.45390 -11.41357 -10.98543 -10.85054 -10.58901 -10.36814 -9.62351 -9.30188 -8.17078 -5.97627 -0.61411 0.16707 1.07581 1.46671 1.51620 1.61191 1.62324 1.92364 2.23327 2.42810 2.71288 2.80824 2.91889 3.06508 3.41099 3.66583 3.74231 3.82742 3.87883 3.98125 4.07149 4.32988 4.35154 4.40693 4.47232 4.55035 4.56980 4.59590 4.61149 4.71754 4.76513 4.88256 4.90529 4.95512 5.02243 5.10753 5.46804 5.86542 6.06619 6.24666 6.41518 6.86380 6.91097 7.06956 7.31695 7.51557 8.14194 8.86443 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.003997 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.349917 B = 7004.298360 C = 8181.945196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.070 3.930 4 C -0.123 4.123 5 C 0.111 3.889 6 N -0.338 5.338 7 N -0.205 5.205 8 C 0.038 3.962 9 C 0.518 3.482 10 O -0.555 6.555 11 N -0.422 5.422 12 C -0.358 4.358 13 H 0.106 0.894 14 C 0.014 3.986 15 N -0.836 5.836 16 Si 0.975 3.025 17 H -0.249 1.249 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.111 3.889 21 C 0.474 3.526 22 O -0.536 6.536 23 O -0.510 6.510 24 C -0.031 4.031 25 C -0.188 4.188 26 C 0.472 3.528 27 O -0.561 6.561 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.259 0.741 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.415 0.585 41 H 0.164 0.836 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.597 -4.642 -5.754 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.007 4.007 4 C -0.162 4.162 5 C -0.008 4.008 6 N -0.158 5.158 7 N -0.035 5.035 8 C -0.132 4.132 9 C 0.305 3.695 10 O -0.433 6.433 11 N -0.142 5.142 12 C -0.486 4.486 13 H 0.123 0.877 14 C -0.195 4.195 15 N -0.470 5.470 16 Si 0.799 3.201 17 H -0.172 1.172 18 H -0.218 1.218 19 H -0.209 1.209 20 C -0.015 4.015 21 C 0.315 3.685 22 O -0.424 6.424 23 O -0.323 6.323 24 C -0.054 4.054 25 C -0.217 4.217 26 C 0.272 3.728 27 O -0.443 6.443 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.068 0.932 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.275 0.725 41 H 0.182 0.818 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.603 -4.636 -5.777 18.181 hybrid contribution 1.107 1.199 -0.121 1.637 sum -15.496 -3.437 -5.899 16.933 Atomic orbital electron populations 1.22932 0.79183 1.03803 1.01077 1.87833 1.21729 1.28574 1.95686 1.22347 0.91377 0.84874 1.02063 1.21665 0.95472 0.95751 1.03305 1.22087 0.72863 0.99423 1.06466 1.47008 1.09918 1.55775 1.03113 1.71601 1.07861 1.09452 1.14550 1.22296 0.88698 1.05158 0.97065 1.17207 0.86426 0.84055 0.81802 1.90601 1.14051 1.53455 1.85182 1.43073 1.03610 1.62443 1.05077 1.19676 1.13116 1.22857 0.92925 0.87671 1.26093 1.01275 0.92681 0.99441 1.70109 1.24774 1.13436 1.38668 0.85187 0.78062 0.78898 0.77915 1.17240 1.21794 1.20854 1.21570 0.81867 0.91505 1.06550 1.24314 0.80364 0.93243 0.70576 1.90806 1.65494 1.40046 1.46039 1.84489 1.22182 1.39738 1.85859 1.22307 1.03394 0.89772 0.89963 1.22887 0.91600 1.05693 1.01551 1.18281 0.91044 0.80037 0.83459 1.90903 1.64807 1.53085 1.35467 0.88771 0.92683 0.93165 0.90588 0.92012 0.92264 0.90322 0.86224 0.87108 0.93169 0.85166 0.85585 0.72495 0.81835 0.79063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.48 10.70 -148.98 -1.59 -10.07 16 3 C 0.07 1.19 5.94 71.98 0.43 1.62 16 4 C -0.12 -2.64 5.89 30.59 0.18 -2.46 16 5 C 0.11 2.53 5.52 86.38 0.48 3.01 16 6 N -0.34 -10.33 3.22 -472.46 -1.52 -11.85 16 7 N -0.20 -7.11 5.45 -48.23 -0.26 -7.37 16 8 C 0.04 1.53 6.65 42.55 0.28 1.81 16 9 C 0.52 25.77 6.71 86.76 0.58 26.35 16 10 O -0.55 -31.60 13.69 -4.04 -0.06 -31.65 16 11 N -0.42 -20.16 2.08 -643.00 -1.33 -21.49 16 12 C -0.36 -18.56 9.31 84.11 0.78 -17.78 16 13 H 0.11 4.96 7.90 -2.91 -0.02 4.93 16 14 C 0.01 0.78 4.38 84.96 0.37 1.15 16 15 N -0.84 -49.84 11.14 21.68 0.24 -49.60 16 16 Si 0.97 43.31 29.60 68.60 2.03 45.34 16 17 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 C 0.11 4.01 5.54 85.64 0.47 4.49 16 21 C 0.47 17.17 6.60 71.24 0.47 17.64 16 22 O -0.54 -25.50 17.13 21.96 0.38 -25.12 16 23 O -0.51 -12.37 12.32 -51.41 -0.63 -13.00 16 24 C -0.03 -1.05 9.67 22.66 0.22 -0.83 16 25 C -0.19 -5.59 10.11 22.57 0.23 -5.36 16 26 C 0.47 15.33 7.45 85.02 0.63 15.96 16 27 O -0.56 -19.75 16.66 -5.23 -0.09 -19.84 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.12 2.38 6.99 -2.39 -0.02 2.37 16 36 H 0.11 2.38 7.44 -2.39 -0.02 2.36 16 37 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.13 4.20 5.66 -2.39 -0.01 4.18 16 39 H 0.13 3.88 8.01 -2.39 -0.02 3.86 16 40 H 0.42 6.82 9.10 -74.05 -0.67 6.14 16 41 H 0.16 5.40 7.73 -2.91 -0.02 5.38 16 42 H 0.19 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -80.08 364.29 3.94 -76.14 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.40 Total: 21.35 kcal Atomic # 6 Polarization: 40.80 SS G_CDS: 6.38 Total: 47.18 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -2.88 Total: -90.32 kcal Atomic # 8 Polarization: -97.69 SS G_CDS: -1.99 Total: -99.69 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -80.08 3.94 -76.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599230411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.285 kcal (2) G-P(sol) polarization free energy of solvation -80.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds