Wall clock time and date at job start Tue Mar 31 2020 22:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00252 * 2 1 4 4 H 1.48499 * 109.47174 * 240.00166 * 3 2 1 5 5 H 1.48502 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47286 * 120.00193 * 3 2 1 7 7 C 1.37875 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47637 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47343 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46789 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00493 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99362 * 180.02562 * 12 11 10 15 15 C 1.46511 * 119.99424 * 180.27731 * 14 12 11 16 16 C 1.53002 * 109.46554 * 179.72194 * 15 14 12 17 17 H 1.08997 * 109.47267 * 304.99030 * 16 15 14 18 18 O 1.42899 * 109.47280 * 65.00148 * 16 15 14 19 19 C 1.35944 * 116.99689 * 204.67062 * 18 16 15 20 20 C 1.38714 * 120.02990 * 174.24586 * 19 18 16 21 21 C 1.38147 * 119.96924 * 179.75380 * 20 19 18 22 22 C 1.38451 * 120.02897 * 0.52548 * 21 20 19 23 23 F 1.35105 * 119.96782 * 179.72601 * 22 21 20 24 24 C 1.38451 * 120.06433 * 359.74986 * 22 21 20 25 25 C 1.38150 * 120.02864 * 359.97438 * 24 22 21 26 26 C 1.50706 * 109.46568 * 184.99909 * 16 15 14 27 27 O 1.20825 * 119.99937 * 244.99966 * 26 16 15 28 28 O 1.34225 * 120.00020 * 65.00229 * 26 16 15 29 29 H 0.97006 * 119.99786 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47443 * 59.99322 * 9 7 2 31 31 H 1.09010 * 109.46608 * 299.99914 * 9 7 2 32 32 H 1.09003 * 109.47003 * 59.99608 * 10 9 7 33 33 H 1.09000 * 109.47035 * 300.00306 * 10 9 7 34 34 H 1.09003 * 109.46887 * 60.00154 * 11 10 9 35 35 H 1.08994 * 109.47555 * 300.00110 * 11 10 9 36 36 H 0.96992 * 120.00709 * 359.97438 * 14 12 11 37 37 H 1.08999 * 109.47031 * 299.72001 * 15 14 12 38 38 H 1.09001 * 109.46978 * 59.72429 * 15 14 12 39 39 H 1.07996 * 120.01111 * 0.02562 * 20 19 18 40 40 H 1.08001 * 119.98098 * 180.25873 * 21 20 19 41 41 H 1.07996 * 119.98629 * 179.97438 * 24 22 21 42 42 H 1.08004 * 120.01642 * 180.02562 * 25 24 22 43 43 H 0.96701 * 117.00297 * 179.97438 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4593 -6.1326 0.0005 13 8 3.6517 -5.9110 -0.0008 14 7 2.0099 -7.4032 0.0004 15 6 2.9620 -8.5168 0.0060 16 6 2.1968 -9.8418 0.0116 17 1 1.5044 -9.8579 0.8532 18 8 1.4661 -9.9751 -1.2092 19 6 0.3688 -10.7773 -1.1872 20 6 -0.4542 -10.8585 -2.3008 21 6 -1.5661 -11.6780 -2.2789 22 6 -1.8653 -12.4096 -1.1422 23 9 -2.9562 -13.2064 -1.1201 24 6 -1.0480 -12.3251 -0.0279 25 6 0.0678 -11.5108 -0.0490 26 6 3.1714 -10.9840 0.1411 27 8 3.2984 -11.7752 -0.7632 28 8 3.8982 -11.1224 1.2610 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6239 -2.5566 0.8904 32 1 2.8718 -3.6044 0.8905 33 1 2.8718 -3.6044 -0.8894 34 1 0.8531 -5.0450 -0.8886 35 1 0.8536 -5.0446 0.8913 36 1 1.0563 -7.5805 0.0011 37 1 3.5890 -8.4632 -0.8840 38 1 3.5882 -8.4551 0.8960 39 1 -0.2232 -10.2848 -3.1861 40 1 -2.2047 -11.7446 -3.1473 41 1 -1.2828 -12.8960 0.8583 42 1 0.7055 -11.4454 0.8202 43 1 4.5096 -11.8706 1.2979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:51 Heat of formation + Delta-G solvation = -194.034324 kcal Electronic energy + Delta-G solvation = -28078.419236 eV Core-core repulsion = 23617.342435 eV Total energy + Delta-G solvation = -4461.076801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.23948 -41.65005 -40.08208 -39.54768 -37.92546 -36.65038 -35.13556 -34.17556 -32.17835 -31.89031 -31.15826 -29.56304 -27.96091 -25.38579 -23.90611 -23.49207 -23.10686 -21.62374 -20.77551 -19.86657 -19.21301 -18.73463 -18.02932 -17.66341 -17.42453 -16.71237 -16.28002 -16.07580 -15.96167 -15.70988 -15.57124 -15.22451 -14.78428 -14.67199 -14.42177 -14.16652 -14.13835 -13.58656 -13.48337 -13.32848 -13.13508 -12.81467 -12.34078 -12.26652 -12.08324 -12.05738 -11.82573 -11.40064 -11.33328 -11.08194 -10.78683 -10.63219 -10.55639 -9.79649 -9.73313 -9.69047 -9.29414 -9.24344 -9.04257 -8.67941 -8.31693 -5.97589 -3.99042 0.60258 0.67385 1.42303 1.93722 2.44665 2.82081 3.04491 3.16344 3.36737 3.40248 3.44040 3.78121 3.87351 3.97159 4.15290 4.21762 4.47953 4.49829 4.57321 4.72109 4.89886 5.01619 5.14497 5.32069 5.34610 5.38479 5.55895 5.62443 5.63952 5.67972 5.69041 5.82917 6.10614 6.16713 6.25145 6.61438 6.71086 6.91315 7.15038 7.21250 7.41007 7.70469 7.83237 8.02924 8.31543 8.46772 9.07843 9.64886 11.13865 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.002001 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.502732 B =13986.313776 C =15613.925838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.137 4.137 12 C 0.517 3.483 13 O -0.533 6.533 14 N -0.738 5.738 15 C 0.133 3.867 16 C 0.086 3.914 17 H 0.122 0.878 18 O -0.272 6.272 19 C 0.118 3.882 20 C -0.111 4.111 21 C -0.110 4.110 22 C 0.064 3.936 23 F -0.140 7.140 24 C -0.110 4.110 25 C -0.181 4.181 26 C 0.459 3.541 27 O -0.485 6.485 28 O -0.507 6.507 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.403 0.597 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 -30.128 1.007 30.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.177 4.177 12 C 0.305 3.695 13 O -0.408 6.408 14 N -0.393 5.393 15 C 0.009 3.991 16 C 0.027 3.973 17 H 0.139 0.861 18 O -0.185 6.185 19 C 0.073 3.927 20 C -0.130 4.130 21 C -0.129 4.129 22 C 0.045 3.955 23 F -0.118 7.118 24 C -0.129 4.129 25 C -0.200 4.200 26 C 0.298 3.702 27 O -0.371 6.371 28 O -0.320 6.320 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.238 0.762 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.149 0.851 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -0.982 -29.648 0.562 29.670 hybrid contribution 0.162 -0.117 0.227 0.302 sum -0.820 -29.765 0.789 29.786 Atomic orbital electron populations 1.69952 1.06031 1.26660 1.51103 1.25019 0.94862 0.99248 0.95385 0.86649 0.79568 0.83065 0.78681 1.20227 1.21348 1.20238 1.21231 0.93154 0.91018 1.50292 0.92623 1.19128 0.93957 0.91426 0.97149 1.21461 0.98676 0.91477 1.01759 1.21855 0.98077 0.93798 1.03982 1.21317 0.90513 0.83288 0.74351 1.90698 1.17304 1.84549 1.48285 1.46001 1.09797 1.05353 1.78180 1.21244 0.91693 0.81099 1.05082 1.22174 0.92935 0.92864 0.89354 0.86077 1.86352 1.36933 1.62386 1.32827 1.19041 0.87134 0.91753 0.94801 1.20322 0.93763 1.00967 0.97929 1.21023 0.97839 0.96207 0.97844 1.17595 0.86721 0.95356 0.95870 1.91510 1.51642 1.71683 1.96998 1.20905 0.94319 0.99519 0.98115 1.21026 1.00010 1.00609 0.98309 1.23626 0.80516 0.86071 0.80011 1.90806 1.63828 1.42672 1.39777 1.84513 1.53227 1.53757 1.40537 0.93007 0.96584 0.96589 0.92646 0.92635 0.89124 0.89166 0.76246 0.89550 0.87853 0.83566 0.83646 0.84227 0.85055 0.72200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.00 4.44 -26.73 -0.12 -2.12 16 11 C -0.14 -2.13 5.70 -27.88 -0.16 -2.28 16 12 C 0.52 7.60 7.83 -10.98 -0.09 7.52 16 13 O -0.53 -9.98 15.98 5.56 0.09 -9.89 16 14 N -0.74 -7.51 5.50 -60.28 -0.33 -7.84 16 15 C 0.13 1.19 5.32 -4.03 -0.02 1.17 16 16 C 0.09 0.62 2.18 -27.88 -0.06 0.56 16 17 H 0.12 0.57 6.33 -51.93 -0.33 0.24 16 18 O -0.27 -2.43 9.33 -39.47 -0.37 -2.80 16 19 C 0.12 0.98 6.46 -39.23 -0.25 0.73 16 20 C -0.11 -0.85 9.99 -39.44 -0.39 -1.25 16 21 C -0.11 -0.79 10.02 -39.54 -0.40 -1.19 16 22 C 0.06 0.52 7.30 -39.42 -0.29 0.23 16 23 F -0.14 -1.25 17.27 2.25 0.04 -1.22 16 24 C -0.11 -0.78 10.02 -39.54 -0.40 -1.18 16 25 C -0.18 -1.30 8.70 -39.44 -0.34 -1.64 16 26 C 0.46 3.58 6.71 36.01 0.24 3.82 16 27 O -0.49 -5.42 17.14 -25.46 -0.44 -5.86 16 28 O -0.51 -2.59 13.39 -39.25 -0.53 -3.11 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.40 3.08 8.47 -40.82 -0.35 2.74 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 0.89 8.12 -51.93 -0.42 0.47 16 39 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.71 5.68 -52.48 -0.30 0.41 16 43 H 0.42 0.48 9.10 45.56 0.41 0.89 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -36.83 381.80 -7.63 -44.47 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.74 Total: -1.29 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.82 Total: -8.92 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.40 Total: -34.01 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.24 Total: -21.66 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.83 -7.63 -44.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.566 kcal (2) G-P(sol) polarization free energy of solvation -36.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds