Wall clock time and date at job start Tue Mar 31 2020 22:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00252 * 2 1 4 4 H 1.48499 * 109.47174 * 240.00166 * 3 2 1 5 5 H 1.48502 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47286 * 120.00193 * 3 2 1 7 7 C 1.37875 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47637 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47343 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46789 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00493 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99362 * 180.02562 * 12 11 10 15 15 C 1.46511 * 119.99424 * 180.27731 * 14 12 11 16 16 C 1.53002 * 109.46554 * 179.72194 * 15 14 12 17 17 H 1.08997 * 109.47267 * 304.99030 * 16 15 14 18 18 O 1.42899 * 109.47280 * 65.00148 * 16 15 14 19 19 C 1.35944 * 116.99689 * 204.67062 * 18 16 15 20 20 C 1.38714 * 120.02990 * 174.24586 * 19 18 16 21 21 C 1.38147 * 119.96924 * 179.75380 * 20 19 18 22 22 C 1.38451 * 120.02897 * 0.52548 * 21 20 19 23 23 F 1.35105 * 119.96782 * 179.72601 * 22 21 20 24 24 C 1.38451 * 120.06433 * 359.74986 * 22 21 20 25 25 C 1.38150 * 120.02864 * 359.97438 * 24 22 21 26 26 C 1.50706 * 109.46568 * 184.99909 * 16 15 14 27 27 O 1.20825 * 119.99937 * 244.99966 * 26 16 15 28 28 O 1.34225 * 120.00020 * 65.00229 * 26 16 15 29 29 H 0.97006 * 119.99786 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47443 * 59.99322 * 9 7 2 31 31 H 1.09010 * 109.46608 * 299.99914 * 9 7 2 32 32 H 1.09003 * 109.47003 * 59.99608 * 10 9 7 33 33 H 1.09000 * 109.47035 * 300.00306 * 10 9 7 34 34 H 1.09003 * 109.46887 * 60.00154 * 11 10 9 35 35 H 1.08994 * 109.47555 * 300.00110 * 11 10 9 36 36 H 0.96992 * 120.00709 * 359.97438 * 14 12 11 37 37 H 1.08999 * 109.47031 * 299.72001 * 15 14 12 38 38 H 1.09001 * 109.46978 * 59.72429 * 15 14 12 39 39 H 1.07996 * 120.01111 * 0.02562 * 20 19 18 40 40 H 1.08001 * 119.98098 * 180.25873 * 21 20 19 41 41 H 1.07996 * 119.98629 * 179.97438 * 24 22 21 42 42 H 1.08004 * 120.01642 * 180.02562 * 25 24 22 43 43 H 0.96701 * 117.00297 * 179.97438 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4593 -6.1326 0.0005 13 8 3.6517 -5.9110 -0.0008 14 7 2.0099 -7.4032 0.0004 15 6 2.9620 -8.5168 0.0060 16 6 2.1968 -9.8418 0.0116 17 1 1.5044 -9.8579 0.8532 18 8 1.4661 -9.9751 -1.2092 19 6 0.3688 -10.7773 -1.1872 20 6 -0.4542 -10.8585 -2.3008 21 6 -1.5661 -11.6780 -2.2789 22 6 -1.8653 -12.4096 -1.1422 23 9 -2.9562 -13.2064 -1.1201 24 6 -1.0480 -12.3251 -0.0279 25 6 0.0678 -11.5108 -0.0490 26 6 3.1714 -10.9840 0.1411 27 8 3.2984 -11.7752 -0.7632 28 8 3.8982 -11.1224 1.2610 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6239 -2.5566 0.8904 32 1 2.8718 -3.6044 0.8905 33 1 2.8718 -3.6044 -0.8894 34 1 0.8531 -5.0450 -0.8886 35 1 0.8536 -5.0446 0.8913 36 1 1.0563 -7.5805 0.0011 37 1 3.5890 -8.4632 -0.8840 38 1 3.5882 -8.4551 0.8960 39 1 -0.2232 -10.2848 -3.1861 40 1 -2.2047 -11.7446 -3.1473 41 1 -1.2828 -12.8960 0.8583 42 1 0.7055 -11.4454 0.8202 43 1 4.5096 -11.8706 1.2979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:50 Heat of formation + Delta-G solvation = -219.128763 kcal Electronic energy + Delta-G solvation = -28079.507413 eV Core-core repulsion = 23617.342435 eV Total energy + Delta-G solvation = -4462.164978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.86505 -42.25807 -40.71502 -40.62164 -38.52153 -37.23293 -36.27100 -35.84527 -34.01318 -32.56550 -31.93813 -30.23326 -29.56400 -26.57194 -25.08467 -24.37948 -23.73477 -22.27719 -22.21686 -21.22762 -19.78897 -19.33834 -18.66772 -18.61736 -18.27872 -18.00692 -17.33703 -17.11471 -16.82037 -16.59016 -16.47442 -16.37148 -15.89553 -15.40971 -15.35476 -15.23835 -14.75879 -14.62669 -14.32648 -14.19868 -14.09869 -13.78389 -13.73575 -13.66761 -13.07269 -12.91713 -12.68174 -12.65108 -12.56660 -12.48452 -12.39941 -11.91023 -11.73031 -11.50892 -11.44001 -11.24988 -10.78766 -10.51582 -10.25984 -10.21447 -9.26429 -8.17982 -6.27541 0.06489 0.11218 0.81732 1.41082 1.41479 1.43903 1.51941 1.64925 1.82384 2.29253 2.43969 2.50663 3.15122 3.19280 3.27484 3.46546 3.63651 3.72449 3.89011 4.03040 4.06606 4.18714 4.26981 4.28933 4.34035 4.52275 4.56370 4.82183 4.85896 5.02216 5.02530 5.07916 5.10326 5.15311 5.21720 5.30588 5.38400 5.57270 5.57657 5.79805 5.90525 6.06402 6.30184 6.47385 6.77302 6.88249 7.23038 7.40948 8.93247 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.002001 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.502732 B =13986.313776 C =15613.925838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.084 4.084 11 C -0.130 4.130 12 C 0.522 3.478 13 O -0.579 6.579 14 N -0.716 5.716 15 C 0.135 3.865 16 C 0.088 3.912 17 H 0.153 0.847 18 O -0.287 6.287 19 C 0.105 3.895 20 C -0.122 4.122 21 C -0.111 4.111 22 C 0.045 3.955 23 F -0.148 7.148 24 C -0.111 4.111 25 C -0.182 4.182 26 C 0.468 3.532 27 O -0.523 6.523 28 O -0.498 6.498 29 H 0.264 0.736 30 H 0.000 1.000 31 H 0.002 0.998 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.419 0.581 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 -30.847 1.849 30.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.122 4.122 11 C -0.170 4.170 12 C 0.311 3.689 13 O -0.458 6.458 14 N -0.370 5.370 15 C 0.011 3.989 16 C 0.030 3.970 17 H 0.170 0.830 18 O -0.200 6.200 19 C 0.060 3.940 20 C -0.140 4.140 21 C -0.129 4.129 22 C 0.026 3.974 23 F -0.127 7.127 24 C -0.129 4.129 25 C -0.200 4.200 26 C 0.308 3.692 27 O -0.412 6.412 28 O -0.313 6.313 29 H 0.073 0.927 30 H 0.018 0.982 31 H 0.021 0.979 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.256 0.744 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.171 0.829 40 H 0.179 0.821 41 H 0.176 0.824 42 H 0.168 0.832 43 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -0.992 -30.415 1.425 30.465 hybrid contribution 0.157 0.049 -0.012 0.165 sum -0.835 -30.366 1.413 30.411 Atomic orbital electron populations 1.70059 1.07467 1.27795 1.51640 1.25896 0.95818 1.03025 0.94796 0.85578 0.78395 0.78508 0.79047 1.19511 1.20496 1.19386 1.21683 0.93368 0.92850 1.50608 0.93014 1.19024 0.94244 0.92367 0.95560 1.21172 0.97637 0.92982 1.00405 1.21682 0.97901 0.91414 1.06003 1.21004 0.89411 0.84389 0.74125 1.90689 1.18920 1.85353 1.50825 1.45696 1.10983 1.04270 1.76070 1.21264 0.91520 0.81328 1.04833 1.22197 0.93210 0.91590 0.90006 0.83012 1.86321 1.37292 1.62682 1.33731 1.19240 0.87099 0.92159 0.95476 1.20500 0.93956 1.01308 0.98284 1.21213 0.97835 0.95653 0.98236 1.17851 0.86943 0.95870 0.96712 1.91487 1.52123 1.72005 1.97085 1.21149 0.93943 0.99355 0.98469 1.21218 1.00127 1.00129 0.98572 1.23626 0.80190 0.85505 0.79867 1.90802 1.65034 1.44178 1.41174 1.84479 1.53112 1.54640 1.39053 0.92706 0.98155 0.97927 0.93824 0.94172 0.87410 0.86897 0.74393 0.91085 0.86979 0.82901 0.82118 0.82426 0.83221 0.70078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.30 4.97 29.85 0.15 1.45 16 10 C -0.08 -3.54 4.44 30.59 0.14 -3.40 16 11 C -0.13 -3.87 5.70 29.85 0.17 -3.70 16 12 C 0.52 14.71 7.83 87.66 0.69 15.40 16 13 O -0.58 -21.51 15.98 -3.02 -0.05 -21.56 16 14 N -0.72 -13.06 5.50 -463.03 -2.55 -15.60 16 15 C 0.13 2.17 5.32 86.38 0.46 2.63 16 16 C 0.09 1.08 2.18 29.85 0.07 1.14 16 17 H 0.15 0.90 6.33 -2.39 -0.02 0.88 16 18 O -0.29 -4.68 9.33 -73.89 -0.69 -5.37 16 19 C 0.10 1.60 6.46 22.50 0.15 1.74 16 20 C -0.12 -1.76 9.99 22.36 0.22 -1.53 16 21 C -0.11 -1.49 10.02 22.30 0.22 -1.27 16 22 C 0.05 0.69 7.30 22.37 0.16 0.85 16 23 F -0.15 -2.56 17.27 44.97 0.78 -1.78 16 24 C -0.11 -1.38 10.02 22.30 0.22 -1.16 16 25 C -0.18 -2.23 8.70 22.36 0.19 -2.04 16 26 C 0.47 6.41 6.71 71.24 0.48 6.89 16 27 O -0.52 -11.14 17.14 28.39 0.49 -10.65 16 28 O -0.50 -3.82 13.39 -51.37 -0.69 -4.51 16 29 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 30 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 32 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 33 H 0.04 1.78 8.10 -2.39 -0.02 1.77 16 34 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.42 5.20 8.47 -92.71 -0.79 4.42 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.11 1.69 8.12 -2.39 -0.02 1.67 16 39 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.15 1.16 5.68 -2.91 -0.02 1.15 16 43 H 0.44 -0.04 9.10 -74.06 -0.67 -0.71 16 Total: -1.00 -80.37 381.80 3.22 -77.15 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -0.39 Total: 5.11 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.01 Total: -13.91 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -2.26 Total: -71.31 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.94 Total: -42.09 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -80.37 3.22 -77.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.977 kcal (2) G-P(sol) polarization free energy of solvation -80.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds