Wall clock time and date at job start Tue Mar 31 2020 22:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86791 * 120.00181 * 2 1 4 4 H 1.48502 * 109.47173 * 269.99572 * 3 2 1 5 5 H 1.48500 * 109.47591 * 29.99489 * 3 2 1 6 6 H 1.48506 * 109.47167 * 149.99548 * 3 2 1 7 7 C 1.38952 * 119.99370 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99312 * 197.91890 * 7 2 1 9 9 N 1.37088 * 120.00225 * 17.92313 * 7 2 1 10 10 C 1.46498 * 120.00069 * 20.90762 * 9 7 2 11 11 C 1.50699 * 109.47060 * 263.87996 * 10 9 7 12 12 O 1.20818 * 119.99936 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99807 * 179.97438 * 11 10 9 14 14 C 1.34779 * 120.00056 * 200.90129 * 9 7 2 15 15 O 1.21292 * 119.99940 * 0.02562 * 14 9 7 16 16 C 1.50703 * 120.00192 * 179.97438 * 14 9 7 17 17 C 1.52995 * 109.47179 * 174.40220 * 16 14 9 18 18 N 1.46505 * 109.54221 * 55.77658 * 17 16 14 19 19 C 1.34594 * 126.43348 * 46.33084 * 18 17 16 20 20 N 1.31071 * 106.67902 * 179.97438 * 19 18 17 21 21 N 1.28842 * 107.98913 * 0.02562 * 20 19 18 22 22 N 1.28738 * 109.39602 * 359.97438 * 21 20 19 23 23 C 1.53178 * 109.61864 * 176.00009 * 17 16 14 24 24 C 1.53083 * 109.16627 * 176.89387 * 23 17 16 25 25 O 1.42906 * 109.41761 * 302.39022 * 24 23 17 26 26 C 1.42907 * 114.09314 * 61.15903 * 25 24 23 27 27 C 1.53098 * 109.41538 * 298.84206 * 26 25 24 28 28 H 0.97007 * 119.99552 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47296 * 23.88698 * 10 9 7 30 30 H 1.09003 * 109.47172 * 143.88292 * 10 9 7 31 31 H 0.96705 * 117.00366 * 180.02562 * 13 11 10 32 32 H 1.08999 * 109.46644 * 54.40678 * 16 14 9 33 33 H 1.08992 * 109.47272 * 294.41009 * 16 14 9 34 34 H 1.07998 * 126.66328 * 0.02562 * 19 18 17 35 35 H 1.09002 * 109.52083 * 296.80434 * 23 17 16 36 36 H 1.09001 * 109.52207 * 56.98301 * 23 17 16 37 37 H 1.09001 * 109.48397 * 182.40694 * 24 23 17 38 38 H 1.09001 * 109.49279 * 62.38138 * 24 23 17 39 39 H 1.09001 * 109.48152 * 178.86390 * 26 25 24 40 40 H 1.08990 * 109.49217 * 58.83449 * 26 25 24 41 41 H 1.08999 * 109.52042 * 297.70564 * 27 26 25 42 42 H 1.08992 * 109.52201 * 177.51686 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5457 1.4401 0.7002 7 6 2.0088 -1.2034 0.0005 8 1 3.0495 -1.2260 0.2883 9 7 1.3732 -2.3620 -0.3643 10 6 0.1528 -2.3046 -1.1727 11 6 -1.0517 -2.3804 -0.2701 12 8 -0.9056 -2.4725 0.9257 13 8 -2.2867 -2.3447 -0.7947 14 6 1.8711 -3.5538 0.0206 15 8 2.8813 -3.6013 0.6902 16 6 1.1720 -4.8274 -0.3799 17 6 2.0097 -6.0293 0.0609 18 7 2.2628 -5.9483 1.5017 19 6 1.3568 -5.6724 2.4581 20 7 1.9969 -5.6996 3.6016 21 7 3.2316 -5.9772 3.3600 22 7 3.3957 -6.1283 2.0921 23 6 1.2563 -7.3250 -0.2550 24 6 2.1353 -8.5214 0.1185 25 8 3.3710 -8.4442 -0.5951 26 6 4.1410 -7.2761 -0.3036 27 6 3.3425 -6.0296 -0.6941 28 1 -0.4850 0.8401 -0.0004 29 1 0.1303 -1.3687 -1.7308 30 1 0.1384 -3.1432 -1.8689 31 1 -3.0281 -2.3960 -0.1760 32 1 1.0479 -4.8485 -1.4626 33 1 0.1938 -4.8710 0.0988 34 1 0.3063 -5.4689 2.3118 35 1 0.3316 -7.3583 0.3212 36 1 1.0246 -7.3614 -1.3195 37 1 1.6212 -9.4461 -0.1438 38 1 2.3330 -8.5069 1.1903 39 1 5.0719 -7.3037 -0.8700 40 1 4.3651 -7.2451 0.7626 41 1 3.1531 -6.0398 -1.7674 42 1 3.9099 -5.1367 -0.4319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:41 Heat of formation + Delta-G solvation = -21.929503 kcal Electronic energy + Delta-G solvation = -32314.209373 eV Core-core repulsion = 27912.808310 eV Total energy + Delta-G solvation = -4401.401064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.76335 -40.17832 -39.41836 -38.29551 -36.09069 -35.30540 -34.62257 -32.81665 -31.98911 -31.70400 -31.14105 -29.20598 -27.88014 -25.47056 -24.29026 -24.06431 -22.81389 -22.77475 -21.33254 -20.43670 -19.25602 -17.40168 -17.30566 -17.05350 -16.67443 -16.20436 -16.05472 -15.91335 -15.90368 -15.46834 -14.91309 -14.71571 -14.64085 -14.41789 -14.00075 -13.62268 -13.28001 -12.94994 -12.74076 -12.61682 -12.31915 -12.29739 -11.99827 -11.77397 -11.71356 -11.54319 -11.41289 -11.13313 -11.00543 -10.75115 -10.60244 -10.55453 -10.48885 -10.38650 -10.28264 -9.82435 -9.73664 -9.56985 -9.24661 -8.75619 -8.09299 -6.62969 -4.12251 1.78718 2.34135 2.79833 3.00531 3.14063 3.18370 3.22296 3.40085 3.73639 3.78989 4.03365 4.09839 4.29223 4.39853 4.58959 4.63128 4.72821 4.84673 5.00448 5.08537 5.21714 5.29027 5.32325 5.35971 5.39163 5.54378 5.57828 5.63241 5.68091 5.74806 5.81483 6.11083 6.20847 6.24149 6.27247 6.35113 6.72140 7.10240 7.29390 7.37561 7.74821 8.14166 8.81875 8.87382 9.07243 9.13216 9.56403 10.45780 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.004546 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.992563 B = 6158.213639 C = 6564.358134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.033 3.967 3 Si 0.932 3.068 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.107 0.893 9 N -0.423 5.423 10 C 0.144 3.856 11 C 0.488 3.512 12 O -0.500 6.500 13 O -0.535 6.535 14 C 0.453 3.547 15 O -0.562 6.562 16 C -0.150 4.150 17 C 0.195 3.805 18 N -0.270 5.270 19 C 0.166 3.834 20 N -0.311 5.311 21 N -0.093 5.093 22 N -0.078 5.078 23 C -0.163 4.163 24 C 0.062 3.938 25 O -0.382 6.382 26 C 0.044 3.956 27 C -0.154 4.154 28 H 0.273 0.727 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.394 0.606 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.219 0.781 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 -11.642 -7.941 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.170 4.170 3 Si 0.759 3.241 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.125 0.875 9 N -0.142 5.142 10 C 0.017 3.983 11 C 0.328 3.672 12 O -0.385 6.385 13 O -0.346 6.346 14 C 0.241 3.759 15 O -0.445 6.445 16 C -0.192 4.192 17 C 0.111 3.889 18 N -0.072 5.072 19 C -0.133 4.133 20 N -0.159 5.159 21 N -0.086 5.086 22 N -0.063 5.063 23 C -0.202 4.202 24 C -0.015 4.015 25 O -0.300 6.300 26 C -0.032 4.032 27 C -0.192 4.192 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.095 0.905 31 H 0.250 0.750 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.235 0.765 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.309 -11.790 -6.821 13.815 hybrid contribution -1.621 1.686 -0.096 2.341 sum -3.930 -10.103 -6.917 12.859 Atomic orbital electron populations 1.69694 1.06055 1.28117 1.48090 1.25291 0.95390 1.00161 0.96189 0.85810 0.79533 0.80365 0.78402 1.20136 1.20909 1.19280 1.19688 0.96105 0.82558 1.45004 0.87545 1.43369 1.20632 1.05433 1.44735 1.20657 0.81692 1.04491 0.91446 1.23722 0.83433 0.70935 0.89106 1.90627 1.85962 1.45015 1.16934 1.84515 1.17239 1.86923 1.45913 1.19708 0.87990 0.84184 0.83998 1.90615 1.26540 1.86269 1.41077 1.22200 0.99799 0.93375 1.03817 1.20903 0.98282 0.95615 0.74118 1.48379 1.05672 1.43478 1.09643 1.27248 1.00151 1.01919 0.84006 1.74872 1.00149 1.18102 1.22780 1.78496 1.09613 1.15224 1.05300 1.78493 1.07336 1.17670 1.02837 1.22716 0.99321 0.93472 1.04711 1.22483 0.85244 0.97667 0.96094 1.87906 1.31943 1.43080 1.67113 1.23038 0.93785 0.83057 1.03337 1.22544 0.94387 1.02335 0.99910 0.91687 0.85501 0.90537 0.74963 0.87338 0.89010 0.76453 0.89654 0.87720 0.88222 0.93553 0.88467 0.89629 0.89280 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.78 9.08 55.50 0.50 -21.28 16 2 C 0.03 0.82 4.93 -17.46 -0.09 0.73 16 3 Si 0.93 19.89 29.59 -169.99 -5.03 14.86 16 4 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 7 C -0.31 -7.85 9.28 -14.94 -0.14 -7.99 16 8 H 0.11 2.93 7.42 -52.49 -0.39 2.54 16 9 N -0.42 -9.43 2.17 -116.10 -0.25 -9.68 16 10 C 0.14 2.69 4.97 -5.20 -0.03 2.67 16 11 C 0.49 9.42 5.97 36.01 0.21 9.64 16 12 O -0.50 -11.60 16.59 -18.74 -0.31 -11.91 16 13 O -0.53 -8.25 13.42 -39.25 -0.53 -8.78 16 14 C 0.45 9.39 6.72 -10.98 -0.07 9.32 16 15 O -0.56 -13.69 12.57 5.55 0.07 -13.62 16 16 C -0.15 -2.16 3.15 -27.88 -0.09 -2.25 16 17 C 0.19 2.64 0.44 -131.64 -0.06 2.58 16 18 N -0.27 -4.52 1.08 -49.64 -0.05 -4.57 16 19 C 0.17 2.88 11.68 -90.39 -1.06 1.82 16 20 N -0.31 -6.28 12.36 29.59 0.37 -5.91 16 21 N -0.09 -1.94 13.43 60.35 0.81 -1.13 16 22 N -0.08 -1.48 9.58 60.35 0.58 -0.90 16 23 C -0.16 -1.59 5.04 -26.60 -0.13 -1.72 16 24 C 0.06 0.67 6.68 37.20 0.25 0.92 16 25 O -0.38 -4.87 10.77 -35.23 -0.38 -5.25 16 26 C 0.04 0.59 6.61 37.21 0.25 0.83 16 27 C -0.15 -2.11 4.47 -26.59 -0.12 -2.23 16 28 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 29 H 0.13 2.55 6.57 -51.93 -0.34 2.20 16 30 H 0.08 1.07 6.54 -51.93 -0.34 0.73 16 31 H 0.39 4.55 9.10 45.56 0.41 4.97 16 32 H 0.11 1.20 7.12 -51.93 -0.37 0.83 16 33 H 0.09 1.25 7.31 -51.93 -0.38 0.87 16 34 H 0.22 3.08 7.76 -52.49 -0.41 2.67 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.58 7.75 -51.93 -0.40 0.18 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.31 5.38 -51.93 -0.28 1.03 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.11 1.95 6.19 -51.93 -0.32 1.63 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -34.76 342.05 -4.20 -38.96 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.06 Total: 9.76 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: -1.07 Total: 14.31 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 1.95 Total: -43.48 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.15 Total: -39.56 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.76 -4.20 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.031 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds