Wall clock time and date at job start Tue Mar 31 2020 22:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86791 * 120.00181 * 2 1 4 4 H 1.48502 * 109.47173 * 269.99572 * 3 2 1 5 5 H 1.48500 * 109.47591 * 29.99489 * 3 2 1 6 6 H 1.48506 * 109.47167 * 149.99548 * 3 2 1 7 7 C 1.38952 * 119.99370 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99312 * 197.91890 * 7 2 1 9 9 N 1.37088 * 120.00225 * 17.92313 * 7 2 1 10 10 C 1.46498 * 120.00069 * 20.90762 * 9 7 2 11 11 C 1.50699 * 109.47060 * 263.87996 * 10 9 7 12 12 O 1.20818 * 119.99936 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99807 * 179.97438 * 11 10 9 14 14 C 1.34779 * 120.00056 * 200.90129 * 9 7 2 15 15 O 1.21292 * 119.99940 * 0.02562 * 14 9 7 16 16 C 1.50703 * 120.00192 * 179.97438 * 14 9 7 17 17 C 1.52995 * 109.47179 * 174.40220 * 16 14 9 18 18 N 1.46505 * 109.54221 * 55.77658 * 17 16 14 19 19 C 1.34594 * 126.43348 * 46.33084 * 18 17 16 20 20 N 1.31071 * 106.67902 * 179.97438 * 19 18 17 21 21 N 1.28842 * 107.98913 * 0.02562 * 20 19 18 22 22 N 1.28738 * 109.39602 * 359.97438 * 21 20 19 23 23 C 1.53178 * 109.61864 * 176.00009 * 17 16 14 24 24 C 1.53083 * 109.16627 * 176.89387 * 23 17 16 25 25 O 1.42906 * 109.41761 * 302.39022 * 24 23 17 26 26 C 1.42907 * 114.09314 * 61.15903 * 25 24 23 27 27 C 1.53098 * 109.41538 * 298.84206 * 26 25 24 28 28 H 0.97007 * 119.99552 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47296 * 23.88698 * 10 9 7 30 30 H 1.09003 * 109.47172 * 143.88292 * 10 9 7 31 31 H 0.96705 * 117.00366 * 180.02562 * 13 11 10 32 32 H 1.08999 * 109.46644 * 54.40678 * 16 14 9 33 33 H 1.08992 * 109.47272 * 294.41009 * 16 14 9 34 34 H 1.07998 * 126.66328 * 0.02562 * 19 18 17 35 35 H 1.09002 * 109.52083 * 296.80434 * 23 17 16 36 36 H 1.09001 * 109.52207 * 56.98301 * 23 17 16 37 37 H 1.09001 * 109.48397 * 182.40694 * 24 23 17 38 38 H 1.09001 * 109.49279 * 62.38138 * 24 23 17 39 39 H 1.09001 * 109.48152 * 178.86390 * 26 25 24 40 40 H 1.08990 * 109.49217 * 58.83449 * 26 25 24 41 41 H 1.08999 * 109.52042 * 297.70564 * 27 26 25 42 42 H 1.08992 * 109.52201 * 177.51686 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5457 1.4401 0.7002 7 6 2.0088 -1.2034 0.0005 8 1 3.0495 -1.2260 0.2883 9 7 1.3732 -2.3620 -0.3643 10 6 0.1528 -2.3046 -1.1727 11 6 -1.0517 -2.3804 -0.2701 12 8 -0.9056 -2.4725 0.9257 13 8 -2.2867 -2.3447 -0.7947 14 6 1.8711 -3.5538 0.0206 15 8 2.8813 -3.6013 0.6902 16 6 1.1720 -4.8274 -0.3799 17 6 2.0097 -6.0293 0.0609 18 7 2.2628 -5.9483 1.5017 19 6 1.3568 -5.6724 2.4581 20 7 1.9969 -5.6996 3.6016 21 7 3.2316 -5.9772 3.3600 22 7 3.3957 -6.1283 2.0921 23 6 1.2563 -7.3250 -0.2550 24 6 2.1353 -8.5214 0.1185 25 8 3.3710 -8.4442 -0.5951 26 6 4.1410 -7.2761 -0.3036 27 6 3.3425 -6.0296 -0.6941 28 1 -0.4850 0.8401 -0.0004 29 1 0.1303 -1.3687 -1.7308 30 1 0.1384 -3.1432 -1.8689 31 1 -3.0281 -2.3960 -0.1760 32 1 1.0479 -4.8485 -1.4626 33 1 0.1938 -4.8710 0.0988 34 1 0.3063 -5.4689 2.3118 35 1 0.3316 -7.3583 0.3212 36 1 1.0246 -7.3614 -1.3195 37 1 1.6212 -9.4461 -0.1438 38 1 2.3330 -8.5069 1.1903 39 1 5.0719 -7.3037 -0.8700 40 1 4.3651 -7.2451 0.7626 41 1 3.1531 -6.0398 -1.7674 42 1 3.9099 -5.1367 -0.4319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:40 Heat of formation + Delta-G solvation = -47.668861 kcal Electronic energy + Delta-G solvation = -32315.325515 eV Core-core repulsion = 27912.808310 eV Total energy + Delta-G solvation = -4402.517206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.14380 -41.51095 -40.71203 -39.71834 -37.37894 -36.71804 -36.23087 -34.19530 -33.71650 -33.00329 -32.12902 -30.44960 -29.39944 -26.99366 -25.72037 -25.15728 -24.10179 -23.96701 -22.76349 -21.61161 -20.80023 -19.00391 -18.68991 -18.42259 -17.99343 -17.62786 -17.42345 -17.09635 -16.99791 -16.73840 -16.37723 -16.16657 -15.97243 -15.69998 -15.51395 -14.86214 -14.50130 -14.15788 -14.11322 -13.80277 -13.71355 -13.49923 -13.39494 -13.26579 -13.06687 -12.91733 -12.72226 -12.47778 -12.35746 -12.25109 -12.18443 -12.06368 -12.03844 -11.63056 -11.45426 -11.36127 -11.10260 -10.96537 -10.64515 -10.34008 -9.82942 -8.47563 -6.01612 0.43768 1.15225 1.31387 1.33601 1.38705 1.48126 1.71810 1.88455 2.19362 2.55567 2.76707 2.88263 3.05652 3.11366 3.30871 3.38943 3.43690 3.75586 3.88933 3.97113 4.13947 4.19955 4.29271 4.36677 4.39830 4.46185 4.49538 4.55973 4.71145 4.76137 4.78087 4.87723 4.97591 4.98176 5.00277 5.13283 5.41480 5.51431 5.98506 6.02739 6.15901 6.34680 7.09300 7.29599 7.50174 7.68979 7.89633 8.58257 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.004546 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.992563 B = 6158.213639 C = 6564.358134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.333 4.333 8 H 0.070 0.930 9 N -0.440 5.440 10 C 0.140 3.860 11 C 0.496 3.504 12 O -0.546 6.546 13 O -0.519 6.519 14 C 0.449 3.551 15 O -0.608 6.608 16 C -0.140 4.140 17 C 0.184 3.816 18 N -0.260 5.260 19 C 0.164 3.836 20 N -0.341 5.341 21 N -0.129 5.129 22 N -0.083 5.083 23 C -0.153 4.153 24 C 0.056 3.944 25 O -0.385 6.385 26 C 0.049 3.951 27 C -0.151 4.151 28 H 0.273 0.727 29 H 0.112 0.888 30 H 0.133 0.867 31 H 0.414 0.586 32 H 0.156 0.844 33 H 0.110 0.890 34 H 0.250 0.750 35 H 0.109 0.891 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.020 0.980 39 H 0.109 0.891 40 H 0.058 0.942 41 H 0.121 0.879 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.785 -13.004 -10.815 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.461 4.461 8 H 0.088 0.912 9 N -0.160 5.160 10 C 0.015 3.985 11 C 0.339 3.661 12 O -0.435 6.435 13 O -0.332 6.332 14 C 0.239 3.761 15 O -0.493 6.493 16 C -0.181 4.181 17 C 0.102 3.898 18 N -0.062 5.062 19 C -0.135 4.135 20 N -0.190 5.190 21 N -0.123 5.123 22 N -0.070 5.070 23 C -0.191 4.191 24 C -0.020 4.020 25 O -0.304 6.304 26 C -0.028 4.028 27 C -0.189 4.189 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.150 0.850 31 H 0.273 0.727 32 H 0.174 0.826 33 H 0.128 0.872 34 H 0.266 0.734 35 H 0.127 0.873 36 H 0.160 0.840 37 H 0.150 0.850 38 H 0.038 0.962 39 H 0.127 0.873 40 H 0.076 0.924 41 H 0.139 0.861 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.867 -13.162 -9.743 17.084 hybrid contribution -0.870 2.075 0.750 2.372 sum -5.738 -11.087 -8.993 15.385 Atomic orbital electron populations 1.69772 1.06366 1.28418 1.48225 1.25803 0.96128 1.01941 0.95867 0.85094 0.77568 0.77593 0.79020 1.18125 1.20852 1.21209 1.19419 0.95210 0.84852 1.46581 0.91226 1.43489 1.21862 1.04977 1.45624 1.20855 0.80168 1.06128 0.91397 1.23745 0.84454 0.69635 0.88312 1.90623 1.86772 1.47283 1.18784 1.84449 1.16730 1.86025 1.45972 1.20773 0.87113 0.85691 0.82519 1.90611 1.28639 1.87284 1.42792 1.22255 0.99446 0.89532 1.06850 1.21421 0.98701 0.97580 0.72141 1.48699 1.04693 1.41963 1.10849 1.27762 1.01254 1.01008 0.83478 1.74754 1.00290 1.19257 1.24699 1.78451 1.10373 1.17046 1.06407 1.78462 1.08534 1.17540 1.02436 1.22807 0.99075 0.89872 1.07380 1.22697 0.84901 0.99835 0.94605 1.87905 1.32838 1.42525 1.67140 1.22889 0.94595 0.83435 1.01837 1.22499 0.94181 1.00473 1.01752 0.91730 0.86981 0.84976 0.72690 0.82645 0.87228 0.73426 0.87275 0.83981 0.85022 0.96164 0.87300 0.92402 0.86081 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.57 9.08 21.66 0.20 -43.38 16 2 C 0.00 0.23 4.93 84.93 0.42 0.65 16 3 Si 0.98 41.33 29.59 68.60 2.03 43.36 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.33 -17.48 9.28 84.04 0.78 -16.70 16 8 H 0.07 4.08 7.42 -2.91 -0.02 4.05 16 9 N -0.44 -19.36 2.17 -639.61 -1.39 -20.75 16 10 C 0.14 4.87 4.97 85.63 0.43 5.29 16 11 C 0.50 17.82 5.97 71.24 0.42 18.24 16 12 O -0.55 -24.48 16.59 21.99 0.36 -24.12 16 13 O -0.52 -14.09 13.42 -51.39 -0.69 -14.78 16 14 C 0.45 18.20 6.72 87.66 0.59 18.79 16 15 O -0.61 -30.43 12.57 -3.07 -0.04 -30.47 16 16 C -0.14 -3.48 3.15 29.85 0.09 -3.39 16 17 C 0.18 4.45 0.44 3.72 0.00 4.45 16 18 N -0.26 -8.52 1.08 -310.96 -0.33 -8.85 16 19 C 0.16 5.59 11.68 180.27 2.10 7.70 16 20 N -0.34 -14.17 12.36 -60.30 -0.75 -14.91 16 21 N -0.13 -5.66 13.43 37.01 0.50 -5.16 16 22 N -0.08 -3.28 9.58 37.02 0.35 -2.93 16 23 C -0.15 -2.21 5.04 30.68 0.15 -2.05 16 24 C 0.06 1.03 6.68 72.01 0.48 1.51 16 25 O -0.39 -8.81 10.77 -148.98 -1.60 -10.41 16 26 C 0.05 1.26 6.61 72.01 0.48 1.73 16 27 C -0.15 -3.87 4.47 30.69 0.14 -3.74 16 28 H 0.27 12.88 8.31 -92.70 -0.77 12.11 16 29 H 0.11 4.28 6.57 -2.39 -0.02 4.27 16 30 H 0.13 3.01 6.54 -2.39 -0.02 2.99 16 31 H 0.41 8.05 9.10 -74.05 -0.67 7.37 16 32 H 0.16 2.42 7.12 -2.39 -0.02 2.40 16 33 H 0.11 2.44 7.31 -2.39 -0.02 2.42 16 34 H 0.25 6.50 7.76 -2.91 -0.02 6.48 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.02 0.48 7.75 -2.39 -0.02 0.46 16 39 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.06 1.82 5.38 -2.39 -0.01 1.80 16 41 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.07 2.51 6.19 -2.39 -0.01 2.49 16 Total: -1.00 -82.13 342.05 5.15 -76.98 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.42 Total: 22.93 kcal Atomic # 6 Polarization: 26.40 SS G_CDS: 6.09 Total: 32.48 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -1.42 Total: -95.98 kcal Atomic # 8 Polarization: -77.81 SS G_CDS: -1.97 Total: -79.78 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -82.13 5.15 -76.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.311 kcal (2) G-P(sol) polarization free energy of solvation -82.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds