Wall clock time and date at job start Tue Mar 31 2020 22:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47454 * 300.00615 * 3 2 1 6 6 H 1.48509 * 109.47005 * 60.00206 * 3 2 1 7 7 C 1.37872 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99909 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00487 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47434 * 180.02562 * 9 7 2 11 11 C 1.38286 * 119.92533 * 90.00155 * 10 9 7 12 12 C 1.38104 * 120.07376 * 180.27908 * 11 10 9 13 13 C 1.38918 * 119.92017 * 359.44392 * 12 11 10 14 14 N 1.39675 * 120.07039 * 180.27814 * 13 12 11 15 15 C 1.46500 * 120.00199 * 0.25610 * 14 13 12 16 16 C 1.52998 * 109.47174 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.24228 * 65.55404 * 16 15 14 18 18 C 1.52590 * 109.24027 * 306.14499 * 16 15 14 19 19 C 1.53039 * 109.98528 * 169.71092 * 18 16 15 20 20 S 1.81674 * 108.99218 * 63.65721 * 19 18 16 21 21 O 1.42107 * 108.65944 * 191.37101 * 20 19 18 22 22 O 1.42098 * 108.75312 * 60.06093 * 20 19 18 23 23 C 1.81669 * 101.30803 * 305.69672 * 20 19 18 24 24 C 1.52592 * 109.24320 * 184.99988 * 16 15 14 25 25 C 1.38905 * 119.85223 * 0.52779 * 13 12 11 26 26 C 1.38099 * 119.92825 * 359.75374 * 25 13 12 27 27 H 0.96995 * 119.99967 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46701 * 59.99816 * 9 7 2 29 29 H 1.08997 * 109.46777 * 300.00602 * 9 7 2 30 30 H 1.08002 * 119.96057 * 359.97438 * 11 10 9 31 31 H 1.07998 * 120.04042 * 179.72222 * 12 11 10 32 32 H 0.96998 * 120.00193 * 180.24886 * 14 13 12 33 33 H 1.09005 * 109.46762 * 299.99634 * 15 14 13 34 34 H 1.09001 * 109.47248 * 59.99432 * 15 14 13 35 35 H 0.96693 * 114.00038 * 300.00143 * 17 16 15 36 36 H 1.08993 * 109.38760 * 289.87986 * 18 16 15 37 37 H 1.09002 * 109.38077 * 49.56387 * 18 16 15 38 38 H 1.08994 * 109.55314 * 303.80042 * 19 18 16 39 39 H 1.09000 * 109.55116 * 183.50386 * 19 18 16 40 40 H 1.08998 * 109.54971 * 294.44645 * 23 20 19 41 41 H 1.09000 * 109.54942 * 174.15628 * 23 20 19 42 42 H 1.09005 * 109.38358 * 310.43948 * 24 16 15 43 43 H 1.08997 * 109.38725 * 70.22152 * 24 16 15 44 44 H 1.08007 * 120.03682 * 179.76844 * 25 13 12 45 45 H 1.07997 * 119.96578 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.6787 -4.1689 1.1980 12 6 3.5806 -5.2148 1.2015 13 6 4.0286 -5.7476 -0.0007 14 7 4.9362 -6.8093 -0.0007 15 6 5.4126 -7.3658 1.2680 16 6 6.3905 -8.5087 0.9884 17 8 7.5584 -7.9845 0.3533 18 6 5.7269 -9.5228 0.0612 19 6 6.7627 -10.5345 -0.4344 20 16 7.3978 -11.4740 0.9850 21 8 8.5347 -12.2168 0.5666 22 8 6.3141 -12.1519 1.6059 23 6 7.9498 -10.1342 2.0808 24 6 6.7872 -9.1652 2.3075 25 6 3.5758 -5.2189 -1.2027 26 6 2.6784 -4.1692 -1.1991 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.3269 -3.7568 2.1322 31 1 3.9338 -5.6210 2.1379 32 1 5.2511 -7.1782 -0.8407 33 1 5.9182 -6.5871 1.8393 34 1 4.5652 -7.7438 1.8400 35 1 7.3834 -7.5434 -0.4892 36 1 4.9394 -10.0468 0.6026 37 1 5.2925 -9.0023 -0.7923 38 1 7.5840 -10.0076 -0.9199 39 1 6.2953 -11.2173 -1.1439 40 1 8.7818 -9.6037 1.6177 41 1 8.2681 -10.5519 3.0359 42 1 7.0907 -8.3959 3.0176 43 1 5.9350 -9.7127 2.7099 44 1 3.9250 -5.6284 -2.1391 45 1 2.3263 -3.7573 -2.1333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647545290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:21 Heat of formation + Delta-G solvation = -99.204482 kcal Electronic energy + Delta-G solvation = -26870.751997 eV Core-core repulsion = 22980.000502 eV Total energy + Delta-G solvation = -3890.751495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.29092 -38.71315 -37.42589 -36.45476 -35.35075 -34.38592 -33.02486 -32.50975 -30.87076 -30.25809 -28.82970 -26.24380 -24.79702 -24.20474 -22.80136 -21.95106 -20.97257 -20.06605 -19.33258 -17.80788 -17.60004 -16.86720 -16.54742 -16.28399 -16.21766 -15.98056 -15.22466 -15.03539 -14.72537 -14.57434 -14.17472 -14.10895 -13.72542 -13.53950 -13.33147 -13.00689 -12.83453 -12.71290 -12.56057 -12.48830 -12.44907 -12.39520 -12.21053 -11.89974 -11.63358 -11.26738 -11.24692 -11.19955 -10.75126 -10.71504 -10.54686 -10.42779 -10.17402 -9.86903 -9.47491 -9.10015 -8.41585 -8.32191 -6.90942 -6.01578 -4.05975 -0.43235 2.03676 2.19263 2.25965 3.15855 3.24423 3.28975 3.36732 3.39036 3.41661 3.56001 3.83573 3.97085 4.04935 4.10729 4.35692 4.39732 4.51676 4.59843 4.68963 4.80057 4.95924 5.16614 5.22320 5.25584 5.31360 5.33622 5.39784 5.44204 5.48326 5.51528 5.94364 6.03235 6.24070 6.30805 6.62522 6.73426 6.96412 7.21901 7.23959 7.28066 7.55549 7.66736 7.88515 7.91893 7.93984 8.36461 9.00088 9.57767 11.07105 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.033099 B = 0.001927 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.749267 B =14527.003385 C =14674.690891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.051 3.949 10 C -0.079 4.079 11 C -0.082 4.082 12 C -0.190 4.190 13 C 0.177 3.823 14 N -0.760 5.760 15 C 0.108 3.892 16 C 0.110 3.890 17 O -0.551 6.551 18 C -0.141 4.141 19 C -0.599 4.599 20 S 2.415 3.585 21 O -0.945 6.945 22 O -0.939 6.939 23 C -0.594 4.594 24 C -0.096 4.096 25 C -0.190 4.190 26 C -0.081 4.081 27 H 0.261 0.739 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.389 0.611 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.383 0.617 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.005 -22.096 1.503 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.015 3.985 10 C -0.081 4.081 11 C -0.100 4.100 12 C -0.213 4.213 13 C 0.079 3.921 14 N -0.396 5.396 15 C -0.018 4.018 16 C 0.069 3.931 17 O -0.358 6.358 18 C -0.180 4.180 19 C -0.728 4.728 20 S 2.597 3.403 21 O -0.942 6.942 22 O -0.936 6.936 23 C -0.724 4.724 24 C -0.134 4.134 25 C -0.212 4.212 26 C -0.100 4.100 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.225 0.775 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.153 0.847 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.209 -23.188 2.356 27.831 hybrid contribution 0.339 1.972 -1.025 2.248 sum 15.548 -21.217 1.330 26.337 Atomic orbital electron populations 1.69968 1.06009 1.26599 1.50884 1.25027 0.94873 0.99229 0.95376 0.86514 0.80145 0.83658 0.77592 1.19722 1.21000 1.20990 1.21149 0.93053 0.90043 1.50392 0.92526 1.18269 0.92526 0.89683 0.98056 1.20500 0.98828 0.96948 0.91807 1.20873 0.96062 0.94789 0.98310 1.20516 1.03820 1.01468 0.95450 1.17521 0.91525 0.89020 0.94082 1.44330 1.51026 1.38044 1.06195 1.21818 0.96876 0.95035 0.88028 1.21507 0.85908 0.92878 0.92829 1.86519 1.31845 1.77109 1.40374 1.22040 0.97637 0.96558 1.01719 1.30112 1.10514 1.12471 1.19687 1.08110 0.75866 0.77649 0.78659 1.93598 1.50988 1.67922 1.81715 1.93597 1.54649 1.70434 1.74901 1.30069 1.09335 1.16425 1.16570 1.21246 0.96999 0.98905 0.96253 1.20444 1.03994 1.01498 0.95248 1.20846 0.96090 0.94705 0.98325 0.92974 0.95631 0.95631 0.86539 0.87321 0.77543 0.90946 0.91149 0.76835 0.88290 0.88680 0.84198 0.84678 0.83734 0.84664 0.88202 0.88120 0.87462 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.14 9.09 -34.44 -0.31 -14.45 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.05 1.31 5.10 -29.04 -0.15 1.17 16 10 C -0.08 -1.68 5.07 -104.59 -0.53 -2.21 16 11 C -0.08 -1.54 9.69 -39.61 -0.38 -1.92 16 12 C -0.19 -2.96 9.31 -39.38 -0.37 -3.33 16 13 C 0.18 2.48 6.65 -83.79 -0.56 1.92 16 14 N -0.76 -7.07 5.11 -58.63 -0.30 -7.37 16 15 C 0.11 0.81 4.03 -4.04 -0.02 0.80 16 16 C 0.11 0.59 0.70 -91.04 -0.06 0.53 16 17 O -0.55 -3.03 10.72 -35.23 -0.38 -3.40 16 18 C -0.14 -0.68 4.69 -26.92 -0.13 -0.80 16 19 C -0.60 -2.58 6.17 37.18 0.23 -2.36 16 20 S 2.41 15.91 5.30 -107.50 -0.57 15.34 16 21 O -0.95 -9.83 18.10 -57.82 -1.05 -10.87 16 22 O -0.94 -9.22 17.95 -57.82 -1.04 -10.26 16 23 C -0.59 -2.78 6.17 37.17 0.23 -2.55 16 24 C -0.10 -0.46 4.83 -26.92 -0.13 -0.59 16 25 C -0.19 -2.90 9.90 -39.39 -0.39 -3.29 16 26 C -0.08 -1.52 9.69 -39.61 -0.38 -1.90 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.11 1.43 6.73 -52.49 -0.35 1.07 16 32 H 0.39 2.73 6.29 -40.82 -0.26 2.48 16 33 H 0.07 0.62 7.94 -51.93 -0.41 0.20 16 34 H 0.07 0.52 7.96 -51.93 -0.41 0.11 16 35 H 0.38 1.40 8.20 45.56 0.37 1.78 16 36 H 0.10 0.48 8.02 -51.93 -0.42 0.06 16 37 H 0.09 0.41 6.18 -51.93 -0.32 0.09 16 38 H 0.14 0.42 7.35 -51.93 -0.38 0.04 16 39 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.14 0.62 7.35 -51.93 -0.38 0.24 16 41 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.44 8.10 -51.93 -0.42 0.02 16 43 H 0.10 0.40 8.01 -51.93 -0.42 -0.02 16 44 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 45 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -36.38 372.68 -10.94 -47.32 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.89 Total: 0.37 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -3.05 Total: -27.52 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.44 Total: -33.01 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -2.46 Total: -24.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 15.91 SS G_CDS: -0.57 Total: 15.34 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.38 -10.94 -47.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647545290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.887 kcal (2) G-P(sol) polarization free energy of solvation -36.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds