Wall clock time and date at job start Tue Mar 31 2020 22:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47454 * 300.00615 * 3 2 1 6 6 H 1.48509 * 109.47005 * 60.00206 * 3 2 1 7 7 C 1.37872 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99909 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00487 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47434 * 180.02562 * 9 7 2 11 11 C 1.38286 * 119.92533 * 90.00155 * 10 9 7 12 12 C 1.38104 * 120.07376 * 180.27908 * 11 10 9 13 13 C 1.38918 * 119.92017 * 359.44392 * 12 11 10 14 14 N 1.39675 * 120.07039 * 180.27814 * 13 12 11 15 15 C 1.46500 * 120.00199 * 0.25610 * 14 13 12 16 16 C 1.52998 * 109.47174 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.24228 * 65.55404 * 16 15 14 18 18 C 1.52590 * 109.24027 * 306.14499 * 16 15 14 19 19 C 1.53039 * 109.98528 * 169.71092 * 18 16 15 20 20 S 1.81674 * 108.99218 * 63.65721 * 19 18 16 21 21 O 1.42107 * 108.65944 * 191.37101 * 20 19 18 22 22 O 1.42098 * 108.75312 * 60.06093 * 20 19 18 23 23 C 1.81669 * 101.30803 * 305.69672 * 20 19 18 24 24 C 1.52592 * 109.24320 * 184.99988 * 16 15 14 25 25 C 1.38905 * 119.85223 * 0.52779 * 13 12 11 26 26 C 1.38099 * 119.92825 * 359.75374 * 25 13 12 27 27 H 0.96995 * 119.99967 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46701 * 59.99816 * 9 7 2 29 29 H 1.08997 * 109.46777 * 300.00602 * 9 7 2 30 30 H 1.08002 * 119.96057 * 359.97438 * 11 10 9 31 31 H 1.07998 * 120.04042 * 179.72222 * 12 11 10 32 32 H 0.96998 * 120.00193 * 180.24886 * 14 13 12 33 33 H 1.09005 * 109.46762 * 299.99634 * 15 14 13 34 34 H 1.09001 * 109.47248 * 59.99432 * 15 14 13 35 35 H 0.96693 * 114.00038 * 300.00143 * 17 16 15 36 36 H 1.08993 * 109.38760 * 289.87986 * 18 16 15 37 37 H 1.09002 * 109.38077 * 49.56387 * 18 16 15 38 38 H 1.08994 * 109.55314 * 303.80042 * 19 18 16 39 39 H 1.09000 * 109.55116 * 183.50386 * 19 18 16 40 40 H 1.08998 * 109.54971 * 294.44645 * 23 20 19 41 41 H 1.09000 * 109.54942 * 174.15628 * 23 20 19 42 42 H 1.09005 * 109.38358 * 310.43948 * 24 16 15 43 43 H 1.08997 * 109.38725 * 70.22152 * 24 16 15 44 44 H 1.08007 * 120.03682 * 179.76844 * 25 13 12 45 45 H 1.07997 * 119.96578 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.6787 -4.1689 1.1980 12 6 3.5806 -5.2148 1.2015 13 6 4.0286 -5.7476 -0.0007 14 7 4.9362 -6.8093 -0.0007 15 6 5.4126 -7.3658 1.2680 16 6 6.3905 -8.5087 0.9884 17 8 7.5584 -7.9845 0.3533 18 6 5.7269 -9.5228 0.0612 19 6 6.7627 -10.5345 -0.4344 20 16 7.3978 -11.4740 0.9850 21 8 8.5347 -12.2168 0.5666 22 8 6.3141 -12.1519 1.6059 23 6 7.9498 -10.1342 2.0808 24 6 6.7872 -9.1652 2.3075 25 6 3.5758 -5.2189 -1.2027 26 6 2.6784 -4.1692 -1.1991 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.3269 -3.7568 2.1322 31 1 3.9338 -5.6210 2.1379 32 1 5.2511 -7.1782 -0.8407 33 1 5.9182 -6.5871 1.8393 34 1 4.5652 -7.7438 1.8400 35 1 7.3834 -7.5434 -0.4892 36 1 4.9394 -10.0468 0.6026 37 1 5.2925 -9.0023 -0.7923 38 1 7.5840 -10.0076 -0.9199 39 1 6.2953 -11.2173 -1.1439 40 1 8.7818 -9.6037 1.6177 41 1 8.2681 -10.5519 3.0359 42 1 7.0907 -8.3959 3.0176 43 1 5.9350 -9.7127 2.7099 44 1 3.9250 -5.6284 -2.1391 45 1 2.3263 -3.7573 -2.1333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647545290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:20 Heat of formation + Delta-G solvation = -127.010387 kcal Electronic energy + Delta-G solvation = -26871.957752 eV Core-core repulsion = 22980.000502 eV Total energy + Delta-G solvation = -3891.957249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89506 -39.85135 -38.04852 -37.07513 -36.50117 -34.92902 -34.76117 -32.89532 -32.24544 -31.61020 -29.84630 -27.72407 -25.49881 -25.00018 -24.27429 -23.12792 -21.65310 -21.26998 -19.83641 -18.63211 -18.45647 -18.05149 -17.44854 -17.22268 -16.91946 -16.70802 -16.54794 -15.84791 -15.77961 -15.45133 -15.17559 -14.83512 -14.56358 -14.44247 -14.33089 -14.08919 -13.96835 -13.82808 -13.40731 -13.25286 -13.19600 -13.11089 -13.08571 -12.87950 -12.78606 -12.60909 -12.55333 -12.38789 -12.00850 -11.70885 -11.60479 -11.56781 -11.34862 -11.18686 -10.82023 -10.58674 -10.56105 -9.65620 -8.30389 -7.95518 -6.30050 -0.90197 0.69931 0.90207 1.39739 1.40097 1.53730 1.76191 2.41354 2.46377 2.72815 2.91856 3.12798 3.14825 3.19735 3.45921 3.53362 3.63342 3.68981 4.04426 4.13823 4.15178 4.26285 4.30520 4.43283 4.53351 4.62222 4.68120 4.75403 4.80109 4.82519 4.86949 4.93829 5.00165 5.06943 5.15529 5.21792 5.38260 5.41529 5.56962 5.71732 5.82266 6.01182 6.24409 6.26049 6.55382 6.68157 6.83953 6.94212 7.38395 8.92085 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.033099 B = 0.001927 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.749267 B =14527.003385 C =14674.690891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.061 3.939 10 C -0.123 4.123 11 C -0.093 4.093 12 C -0.190 4.190 13 C 0.200 3.800 14 N -0.741 5.741 15 C 0.101 3.899 16 C 0.120 3.880 17 O -0.557 6.557 18 C -0.145 4.145 19 C -0.583 4.583 20 S 2.412 3.588 21 O -0.991 6.991 22 O -0.979 6.979 23 C -0.581 4.581 24 C -0.104 4.104 25 C -0.186 4.186 26 C -0.093 4.093 27 H 0.264 0.736 28 H -0.003 1.003 29 H -0.004 1.004 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.405 0.595 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.392 0.608 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.142 0.858 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.581 -22.813 1.204 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.071 0.929 9 C 0.024 3.976 10 C -0.124 4.124 11 C -0.112 4.112 12 C -0.213 4.213 13 C 0.098 3.902 14 N -0.376 5.376 15 C -0.024 4.024 16 C 0.079 3.921 17 O -0.365 6.365 18 C -0.184 4.184 19 C -0.715 4.715 20 S 2.600 3.400 21 O -0.989 6.989 22 O -0.976 6.976 23 C -0.712 4.712 24 C -0.142 4.142 25 C -0.208 4.208 26 C -0.111 4.111 27 H 0.073 0.927 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.124 0.876 31 H 0.155 0.845 32 H 0.243 0.757 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.242 0.758 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.177 0.823 39 H 0.166 0.834 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.160 0.840 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.825 -23.982 2.051 29.951 hybrid contribution -0.404 2.097 -0.926 2.327 sum 17.421 -21.886 1.125 27.995 Atomic orbital electron populations 1.70097 1.07682 1.27733 1.51810 1.25967 0.95790 1.03180 0.94865 0.85397 0.78937 0.78804 0.77903 1.18897 1.20211 1.20233 1.21471 0.93009 0.91448 1.50122 0.92893 1.17998 0.92898 0.91526 0.95138 1.20143 1.00614 0.97629 0.94062 1.20843 0.97245 0.96125 0.96995 1.20696 1.02789 1.00352 0.97438 1.17559 0.90660 0.88950 0.93021 1.44331 1.49092 1.36131 1.08063 1.22010 0.97658 0.95674 0.87019 1.21377 0.85412 0.92084 0.93266 1.86526 1.31741 1.77220 1.41027 1.22112 0.97694 0.96523 1.02060 1.29971 1.11057 1.12204 1.18231 1.07891 0.74618 0.78197 0.79322 1.93539 1.52434 1.70242 1.82646 1.93544 1.55519 1.72445 1.76073 1.29936 1.09539 1.15098 1.16662 1.21375 0.97365 0.99172 0.96312 1.20664 1.02674 1.00147 0.97311 1.20840 0.97260 0.96064 0.96980 0.92701 0.98488 0.98570 0.87555 0.84534 0.75666 0.91194 0.90451 0.75757 0.88214 0.87509 0.82345 0.83352 0.82879 0.83301 0.87351 0.87296 0.84004 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.52 -30.24 9.09 25.60 0.23 -30.00 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.06 3.35 5.10 29.10 0.15 3.50 16 10 C -0.12 -5.41 5.07 -19.84 -0.10 -5.51 16 11 C -0.09 -3.57 9.69 22.25 0.22 -3.35 16 12 C -0.19 -5.51 9.31 22.40 0.21 -5.30 16 13 C 0.20 4.93 6.65 38.21 0.25 5.18 16 14 N -0.74 -10.36 5.11 -339.41 -1.73 -12.09 16 15 C 0.10 1.09 4.03 86.38 0.35 1.44 16 16 C 0.12 0.80 0.70 -11.07 -0.01 0.80 16 17 O -0.56 -3.67 10.72 -148.98 -1.60 -5.26 16 18 C -0.15 -0.82 4.69 30.47 0.14 -0.67 16 19 C -0.58 -3.15 6.17 71.99 0.44 -2.71 16 20 S 2.41 28.25 5.30 -56.49 -0.30 27.95 16 21 O -0.99 -20.13 18.10 -127.38 -2.31 -22.44 16 22 O -0.98 -18.50 17.95 -127.38 -2.29 -20.79 16 23 C -0.58 -3.89 6.17 71.99 0.44 -3.44 16 24 C -0.10 -0.65 4.83 30.47 0.15 -0.51 16 25 C -0.19 -5.20 9.90 22.40 0.22 -4.98 16 26 C -0.09 -3.49 9.69 22.25 0.22 -3.28 16 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 29 H 0.00 -0.24 8.08 -2.39 -0.02 -0.26 16 30 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.14 3.13 6.73 -2.91 -0.02 3.11 16 32 H 0.41 3.50 6.29 -92.71 -0.58 2.91 16 33 H 0.07 0.88 7.94 -2.38 -0.02 0.86 16 34 H 0.08 0.82 7.96 -2.39 -0.02 0.80 16 35 H 0.39 0.96 8.20 -74.06 -0.61 0.36 16 36 H 0.10 0.62 8.02 -2.39 -0.02 0.60 16 37 H 0.11 0.39 6.18 -2.39 -0.01 0.38 16 38 H 0.16 0.33 7.35 -2.39 -0.02 0.31 16 39 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.15 0.83 7.35 -2.39 -0.02 0.82 16 41 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.11 0.57 8.10 -2.38 -0.02 0.55 16 43 H 0.11 0.54 8.01 -2.39 -0.02 0.52 16 44 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 45 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -82.57 372.68 -2.71 -85.28 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -0.18 Total: 5.79 kcal Atomic # 6 Polarization: -51.79 SS G_CDS: 3.38 Total: -48.41 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -1.45 Total: -68.73 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -6.19 Total: -48.49 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 28.25 SS G_CDS: -0.30 Total: 27.95 kcal Total: -82.57 -2.71 -85.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647545290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.733 kcal (2) G-P(sol) polarization free energy of solvation -82.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds