Wall clock time and date at job start Tue Mar 31 2020 22:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47603 * 2 1 4 4 C 1.50696 * 109.47480 * 120.00848 * 2 1 3 5 5 H 1.07998 * 120.00231 * 119.99793 * 4 2 1 6 6 C 1.37879 * 119.99824 * 299.99669 * 4 2 1 7 7 N 1.31521 * 119.99838 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00105 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47214 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46965 * 120.00028 * 8 6 4 11 11 H 1.48498 * 109.47443 * 239.99990 * 8 6 4 12 12 C 1.50704 * 109.47195 * 240.00463 * 2 1 3 13 13 O 1.20819 * 120.00158 * 240.00434 * 12 2 1 14 14 O 1.34239 * 119.99812 * 59.99637 * 12 2 1 15 15 C 1.45196 * 116.99827 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46871 * 180.02562 * 15 14 12 17 17 O 1.21274 * 120.00046 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99769 * 179.97438 * 16 15 14 19 19 C 1.38725 * 120.00030 * 180.02562 * 18 16 15 20 20 N 1.30982 * 126.35592 * 359.97290 * 19 18 16 21 21 N 1.28657 * 109.31579 * 179.75260 * 20 19 18 22 22 C 1.30137 * 109.51772 * 0.44787 * 21 20 19 23 23 C 1.50700 * 126.21818 * 179.82672 * 22 21 20 24 24 H 1.09003 * 110.41793 * 162.38024 * 23 22 21 25 25 C 1.54478 * 110.37139 * 284.68445 * 23 22 21 26 26 C 1.54510 * 104.06500 * 142.81210 * 25 23 22 27 27 C 1.54477 * 104.18108 * 359.93120 * 26 25 23 28 28 O 1.44415 * 110.37723 * 40.06677 * 23 22 21 29 29 O 1.34576 * 126.36315 * 179.97438 * 19 18 16 30 30 H 1.08995 * 109.46585 * 299.99400 * 1 2 3 31 31 H 1.09003 * 109.47304 * 59.99546 * 1 2 3 32 32 H 1.09007 * 109.47003 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99701 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47337 * 60.00451 * 15 14 12 35 35 H 1.09005 * 109.47302 * 299.99760 * 15 14 12 36 36 H 0.96996 * 120.00002 * 0.02562 * 18 16 15 37 37 H 1.09000 * 110.51268 * 24.16636 * 25 23 22 38 38 H 1.09007 * 110.63128 * 261.51455 * 25 23 22 39 39 H 1.09002 * 110.51305 * 118.64650 * 26 25 23 40 40 H 1.08994 * 110.51141 * 241.21979 * 26 25 23 41 41 H 1.09006 * 110.37498 * 94.92285 * 27 26 25 42 42 H 1.09000 * 110.37254 * 217.25804 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2396 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3215 -1.1208 4.0078 9 1 3.1465 -2.2874 3.6035 10 1 3.1469 -0.1878 4.8164 11 1 1.1663 -1.5871 4.8159 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1198 14 8 1.7080 -0.2516 -2.4497 15 6 2.2267 -0.9860 -3.5898 16 6 1.7627 -0.3286 -4.8641 17 8 1.0641 0.6616 -4.8160 18 7 2.1249 -0.8406 -6.0570 19 6 1.6983 -0.2352 -7.2300 20 7 0.9444 0.8319 -7.3234 21 7 0.7545 1.1114 -8.5648 22 6 1.3671 0.2350 -9.3065 23 6 1.3900 0.2038 -10.8130 24 1 2.2065 -0.4250 -11.1680 25 6 0.0395 -0.3086 -11.3608 26 6 -0.1951 0.5372 -12.6323 27 6 1.0393 1.4632 -12.7041 28 8 1.5190 1.5414 -11.3418 29 8 1.9821 -0.6351 -8.4833 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7091 1.1611 3.4845 34 1 1.8624 -2.0129 -3.5568 35 1 3.3162 -0.9857 -3.5571 36 1 2.6839 -1.6323 -6.0954 37 1 -0.7564 -0.1374 -10.6360 38 1 0.1040 -1.3672 -11.6128 39 1 -0.2442 -0.1029 -13.5132 40 1 -1.1082 1.1248 -12.5371 41 1 1.8024 1.0289 -13.3501 42 1 0.7524 2.4507 -13.0653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649879279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:31 Heat of formation + Delta-G solvation = -100.602295 kcal Electronic energy + Delta-G solvation = -28183.972065 eV Core-core repulsion = 23746.866742 eV Total energy + Delta-G solvation = -4437.105323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.52352 -40.52486 -39.95116 -39.44093 -36.52010 -35.98496 -35.46040 -33.94427 -32.83731 -32.01416 -30.78164 -29.52158 -28.13386 -25.22916 -24.90192 -24.31922 -22.97473 -22.65886 -21.83235 -20.99852 -20.01638 -19.16813 -17.99447 -17.66165 -17.45397 -16.86530 -16.75655 -16.44441 -16.20019 -15.92610 -15.76255 -15.48805 -14.88348 -14.55347 -14.37863 -14.03424 -13.78223 -13.10676 -12.79518 -12.75270 -12.57930 -12.40572 -12.24702 -12.04332 -11.98059 -11.65235 -11.56616 -11.39763 -11.14354 -11.09345 -10.82463 -10.73275 -10.50741 -10.44990 -10.34594 -10.31996 -10.09681 -9.30423 -9.14153 -9.06589 -8.48488 -6.13027 -4.19568 0.68884 0.86436 1.92691 2.37196 2.45449 3.11710 3.23519 3.27396 3.35340 3.42858 3.45465 3.73505 3.98526 4.01138 4.17858 4.25197 4.39052 4.42586 4.60477 4.63785 4.76352 4.96634 4.97515 4.99571 5.10007 5.20241 5.21918 5.25793 5.36990 5.44653 5.62599 5.87160 6.07509 6.47159 6.65884 6.83076 6.84833 7.02234 7.40064 7.52036 7.72146 7.90561 8.09372 8.12030 8.65853 8.88647 9.46218 10.94226 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.045757 B = 0.001678 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.784829 B =16683.277406 C =16990.187302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.068 0.932 4 C -0.515 4.515 5 H 0.077 0.923 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.470 3.530 13 O -0.514 6.514 14 O -0.341 6.341 15 C 0.057 3.943 16 C 0.515 3.485 17 O -0.431 6.431 18 N -0.616 5.616 19 C 0.396 3.604 20 N -0.266 5.266 21 N -0.236 5.236 22 C 0.144 3.856 23 C 0.183 3.817 24 H 0.103 0.897 25 C -0.145 4.145 26 C -0.153 4.153 27 C 0.045 3.955 28 O -0.350 6.350 29 O -0.234 6.234 30 H 0.097 0.903 31 H 0.027 0.973 32 H 0.031 0.969 33 H 0.264 0.736 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.429 0.571 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 -5.333 -31.465 31.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 H 0.086 0.914 4 C -0.553 4.553 5 H 0.095 0.905 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.315 3.685 13 O -0.400 6.400 14 O -0.258 6.258 15 C -0.021 4.021 16 C 0.300 3.700 17 O -0.293 6.293 18 N -0.277 5.277 19 C 0.097 3.903 20 N -0.121 5.121 21 N -0.083 5.083 22 C -0.069 4.069 23 C 0.124 3.876 24 H 0.121 0.879 25 C -0.184 4.184 26 C -0.190 4.190 27 C -0.032 4.032 28 O -0.268 6.268 29 O -0.113 6.113 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.267 0.733 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.140 -3.562 -30.688 30.895 hybrid contribution 1.483 -2.275 0.269 2.729 sum 1.623 -5.837 -30.419 31.017 Atomic orbital electron populations 1.21756 0.95294 1.00133 1.02142 1.18841 0.95111 0.97163 0.84788 0.91397 1.21151 1.32179 1.13349 0.88633 0.90505 1.24950 0.94866 0.95007 0.99168 1.69897 1.36284 1.22678 1.23877 0.86309 0.78638 0.79657 0.82111 1.19528 1.20875 1.20869 1.25659 0.76387 0.83248 0.83178 1.90510 1.36455 1.26694 1.86375 1.86765 1.70062 1.54726 1.14292 1.22233 1.00876 0.96227 0.82752 1.20817 0.81084 0.85242 0.82861 1.90948 1.31392 1.22155 1.84837 1.42617 1.53277 1.32099 0.99720 1.23429 0.95345 0.91558 0.79972 1.75409 1.16129 1.10777 1.09815 1.74426 1.17550 1.20290 0.96000 1.26877 0.96359 0.88189 0.95476 1.20883 0.99564 0.86951 0.80226 0.87897 1.23027 0.96209 1.00980 0.98184 1.22945 0.99885 0.98490 0.97729 1.23572 0.94800 1.01602 0.83197 1.89303 1.85342 1.25500 1.26701 1.84670 1.61019 1.50059 1.15600 0.88432 0.95376 0.94946 0.92637 0.87620 0.87610 0.73279 0.89431 0.89110 0.89788 0.89789 0.91435 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.90 37.16 0.33 -2.89 16 2 C 0.06 1.50 2.74 -92.93 -0.25 1.25 16 3 H 0.07 1.78 8.14 -51.93 -0.42 1.35 16 4 C -0.52 -14.15 8.37 -34.44 -0.29 -14.44 16 5 H 0.08 2.17 6.76 -52.49 -0.35 1.82 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.64 11.32 55.43 0.63 -24.01 16 8 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.47 10.54 7.25 36.01 0.26 10.80 16 13 O -0.51 -12.01 15.21 -18.74 -0.29 -12.30 16 14 O -0.34 -6.62 9.66 -45.93 -0.44 -7.06 16 15 C 0.06 0.77 5.94 36.01 0.21 0.98 16 16 C 0.51 7.11 7.87 -10.98 -0.09 7.02 16 17 O -0.43 -8.17 15.22 -14.10 -0.21 -8.38 16 18 N -0.62 -6.26 5.39 -12.94 -0.07 -6.33 16 19 C 0.40 5.12 9.08 -86.50 -0.79 4.34 16 20 N -0.27 -4.41 10.46 29.94 0.31 -4.09 16 21 N -0.24 -3.55 12.20 32.58 0.40 -3.16 16 22 C 0.14 1.64 7.31 -13.00 -0.10 1.54 16 23 C 0.18 1.36 3.86 -27.11 -0.10 1.26 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 25 C -0.15 -0.76 6.62 -25.16 -0.17 -0.93 16 26 C -0.15 -0.57 7.08 -25.16 -0.18 -0.75 16 27 C 0.04 0.21 7.65 37.93 0.29 0.50 16 28 O -0.35 -3.16 11.32 -35.23 -0.40 -3.56 16 29 O -0.23 -2.52 10.90 4.02 0.04 -2.47 16 30 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 31 H 0.03 0.61 8.11 -51.93 -0.42 0.18 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.11 1.17 8.13 -51.93 -0.42 0.75 16 35 H 0.11 1.17 8.13 -51.93 -0.42 0.75 16 36 H 0.43 2.25 8.82 -40.82 -0.36 1.89 16 37 H 0.09 0.61 7.86 -51.93 -0.41 0.20 16 38 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 39 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -36.60 367.87 -5.69 -42.29 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.22 Total: -2.84 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -0.96 Total: 10.26 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 1.27 Total: -37.59 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.30 Total: -33.78 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.60 -5.69 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649879279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.312 kcal (2) G-P(sol) polarization free energy of solvation -36.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds