Wall clock time and date at job start Tue Mar 31 2020 22:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99873 * 2 1 4 4 O 1.20820 * 120.00268 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99962 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47246 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47122 * 180.02562 * 6 5 3 8 8 C 1.36944 * 119.99823 * 269.99947 * 7 6 5 9 9 H 1.07993 * 119.99782 * 326.21446 * 8 7 6 10 10 C 1.38805 * 119.99785 * 146.21296 * 8 7 6 11 11 N 1.31618 * 120.00094 * 337.69372 * 10 8 7 12 12 Si 1.86800 * 119.99990 * 157.68876 * 10 8 7 13 13 H 1.48496 * 109.47174 * 60.00002 * 12 10 8 14 14 H 1.48504 * 109.47434 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47079 * 300.00127 * 12 10 8 16 16 C 1.46494 * 120.00036 * 89.99833 * 7 6 5 17 17 C 1.53000 * 109.47057 * 85.78985 * 16 7 6 18 18 N 1.46499 * 109.47581 * 179.97438 * 17 16 7 19 19 C 1.35762 * 119.62448 * 89.99542 * 18 17 16 20 20 C 1.35346 * 120.70163 * 180.02562 * 19 18 17 21 21 N 1.48009 * 120.02566 * 180.02562 * 20 19 18 22 22 O 1.21797 * 119.99954 * 359.97438 * 21 20 19 23 23 O 1.21802 * 119.99800 * 179.97438 * 21 20 19 24 24 C 1.40193 * 119.95264 * 359.97438 * 20 19 18 25 25 C 1.36410 * 119.26195 * 359.97438 * 24 20 19 26 26 C 1.34661 * 119.62655 * 269.73026 * 18 17 16 27 27 O 1.22066 * 119.98234 * 359.97182 * 26 18 17 28 28 H 1.09002 * 109.47284 * 60.00021 * 1 2 3 29 29 H 1.08997 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47164 * 300.00638 * 1 2 3 31 31 H 1.08998 * 109.46705 * 59.99508 * 5 3 2 32 32 H 1.09003 * 109.47218 * 300.00058 * 5 3 2 33 33 H 1.09004 * 109.47201 * 60.00506 * 6 5 3 34 34 H 1.09003 * 109.47195 * 300.00239 * 6 5 3 35 35 H 0.97004 * 120.00162 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.47254 * 325.78844 * 16 7 6 37 37 H 1.08997 * 109.47084 * 205.78205 * 16 7 6 38 38 H 1.08999 * 109.46897 * 299.99952 * 17 16 7 39 39 H 1.09005 * 109.47435 * 59.99667 * 17 16 7 40 40 H 1.07997 * 119.65065 * 0.02562 * 19 18 17 41 41 H 1.07997 * 120.37209 * 180.02562 * 24 20 19 42 42 H 1.07995 * 120.34907 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.1469 2.8552 1.1857 9 1 5.7170 3.3539 2.0417 10 6 7.3924 2.2511 1.2875 11 7 7.7320 1.2974 0.4464 12 14 8.5868 2.7917 2.6182 13 1 7.9725 2.5745 3.9526 14 1 9.8374 1.9979 2.5133 15 1 8.9000 4.2331 2.4463 16 6 6.1946 2.8563 -1.2689 17 6 6.2824 4.3013 -1.7643 18 7 7.0144 4.3391 -3.0328 19 6 6.3366 4.2160 -4.2027 20 6 6.9910 4.2474 -5.3870 21 7 6.2371 4.1123 -6.6535 22 8 5.0274 3.9724 -6.6302 23 8 6.8265 4.1411 -7.7191 24 6 8.3833 4.4090 -5.4133 25 6 9.0625 4.5336 -4.2369 26 6 8.3512 4.5010 -3.0253 27 8 8.9459 4.6157 -1.9655 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9563 0.7805 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 3.6101 3.2367 0.8894 34 1 3.6107 3.2356 -0.8906 35 1 8.6023 0.8749 0.5178 36 1 5.6713 2.2499 -2.0082 37 1 7.1997 2.4615 -1.1207 38 1 5.2773 4.6962 -1.9125 39 1 6.8057 4.9077 -1.0251 40 1 5.2639 4.0917 -4.1881 41 1 8.9123 4.4354 -6.3545 42 1 10.1351 4.6593 -4.2367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654552737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:45 Heat of formation + Delta-G solvation = -63.988549 kcal Electronic energy + Delta-G solvation = -29554.363737 eV Core-core repulsion = 25118.846105 eV Total energy + Delta-G solvation = -4435.517632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.31873 -41.36854 -40.15735 -37.22358 -36.83833 -36.53630 -36.13068 -34.77859 -32.26619 -31.02747 -30.71149 -28.78286 -27.41304 -26.31933 -25.01467 -24.38271 -23.55193 -22.33048 -21.10092 -19.94784 -19.43984 -18.87283 -17.57830 -17.49634 -17.43603 -17.08866 -16.95869 -16.31485 -16.28128 -15.84143 -15.60627 -14.95945 -14.69142 -14.19925 -13.94809 -13.69826 -13.36736 -13.19609 -12.89293 -12.66324 -12.48900 -12.35725 -12.20651 -11.98362 -11.59712 -11.57836 -11.34741 -11.23397 -11.14021 -10.94971 -10.67616 -10.63578 -10.53366 -10.32882 -10.21727 -10.12279 -10.09058 -10.04254 -8.75966 -8.53361 -7.03115 -6.09103 -3.64441 -0.00011 0.57714 1.26228 1.66454 2.46077 2.51370 2.99658 3.27874 3.31459 3.35492 3.39032 4.04063 4.15883 4.29660 4.42673 4.65590 5.01564 5.08362 5.12944 5.13716 5.19634 5.32470 5.43220 5.49084 5.52163 5.62169 5.65608 5.71353 5.83320 5.91526 5.99410 6.15002 6.34840 6.41005 6.46241 6.58055 6.71928 6.76309 7.26790 7.58326 7.66707 7.75189 8.02004 8.17665 8.84072 9.47661 9.98587 10.92862 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007464 B = 0.004266 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3750.684506 B = 6561.418540 C = 9814.496238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.518 6.518 5 C -0.131 4.131 6 C 0.158 3.842 7 N -0.568 5.568 8 C -0.280 4.280 9 H 0.070 0.930 10 C 0.023 3.977 11 N -0.880 5.880 12 Si 0.904 3.096 13 H -0.280 1.280 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.129 3.871 17 C 0.055 3.945 18 N -0.466 5.466 19 C 0.247 3.753 20 C -0.170 4.170 21 N 0.057 4.943 22 O -0.181 6.181 23 O -0.170 6.170 24 C -0.001 4.001 25 C -0.219 4.219 26 C 0.510 3.490 27 O -0.494 6.494 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.260 0.740 36 H 0.031 0.969 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.189 0.811 41 H 0.157 0.843 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.138 2.070 -8.403 10.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.306 3.694 4 O -0.407 6.407 5 C -0.172 4.172 6 C 0.031 3.969 7 N -0.286 5.286 8 C -0.408 4.408 9 H 0.088 0.912 10 C -0.179 4.179 11 N -0.520 5.520 12 Si 0.732 3.268 13 H -0.206 1.206 14 H -0.214 1.214 15 H -0.204 1.204 16 C 0.001 3.999 17 C -0.067 4.067 18 N -0.172 5.172 19 C 0.107 3.893 20 C -0.261 4.261 21 N 0.571 4.429 22 O -0.391 6.391 23 O -0.383 6.383 24 C -0.022 4.022 25 C -0.242 4.242 26 C 0.309 3.691 27 O -0.370 6.370 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.206 0.794 41 H 0.175 0.825 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.440 2.391 -6.956 8.592 hybrid contribution 0.156 0.048 0.175 0.239 sum -4.284 2.439 -6.781 8.384 Atomic orbital electron populations 1.23172 0.77494 1.03121 1.02193 1.86593 1.22684 1.34598 1.84320 1.24586 0.92849 0.80776 0.71152 1.90608 1.67591 1.36377 1.46104 1.22384 0.84286 1.04532 1.05951 1.20877 0.84981 0.90612 1.00427 1.43774 0.99644 1.83113 1.02113 1.19081 1.00845 1.30616 0.90302 0.91188 1.25138 1.00018 0.94697 0.98067 1.69895 1.21649 1.21724 1.38765 0.86358 0.80362 0.78885 0.81172 1.20585 1.21444 1.20424 1.21350 1.02766 0.88951 0.86805 1.23671 0.95638 1.06155 0.81251 1.46253 1.09833 1.53366 1.07756 1.21766 1.00084 0.83452 0.84031 1.19937 0.93070 1.29131 0.83981 1.43011 1.00829 0.97016 1.02055 1.94545 0.96221 1.54250 1.94125 1.94523 1.71222 1.55007 1.17582 1.20960 0.90192 0.90316 1.00778 1.22130 1.02161 1.09996 0.89926 1.17419 0.80723 0.79171 0.91742 1.91094 1.65798 1.47521 1.32585 0.92225 0.88629 0.92227 0.88598 0.87261 0.92194 0.93574 0.92961 0.95057 0.86658 0.89711 0.87029 0.79427 0.82543 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -5.37 10.57 -39.25 -0.41 -5.79 16 3 C 0.46 7.53 7.96 36.01 0.29 7.82 16 4 O -0.52 -9.31 15.73 -18.75 -0.29 -9.61 16 5 C -0.13 -2.23 6.13 -27.88 -0.17 -2.40 16 6 C 0.16 2.86 4.98 -4.04 -0.02 2.84 16 7 N -0.57 -11.97 2.45 -173.25 -0.43 -12.39 16 8 C -0.28 -6.77 9.49 -15.06 -0.14 -6.91 16 9 H 0.07 1.70 7.92 -52.49 -0.42 1.28 16 10 C 0.02 0.58 4.93 -17.43 -0.09 0.49 16 11 N -0.88 -23.14 11.32 55.49 0.63 -22.51 16 12 Si 0.90 20.72 29.61 -169.99 -5.03 15.69 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.13 2.54 5.58 -4.04 -0.02 2.51 16 17 C 0.05 0.88 5.66 -4.04 -0.02 0.86 16 18 N -0.47 -6.70 2.58 -119.77 -0.31 -7.00 16 19 C 0.25 2.91 9.81 -16.84 -0.17 2.74 16 20 C -0.17 -2.05 6.82 -80.25 -0.55 -2.59 16 21 N 0.06 0.77 4.45 33.82 0.15 0.92 16 22 O -0.18 -2.55 18.39 -29.46 -0.54 -3.09 16 23 O -0.17 -2.38 18.50 -29.46 -0.54 -2.92 16 24 C 0.00 -0.01 9.59 -39.51 -0.38 -0.39 16 25 C -0.22 -2.70 9.99 -39.38 -0.39 -3.10 16 26 C 0.51 8.21 7.41 -15.45 -0.11 8.09 16 27 O -0.49 -10.15 16.63 4.86 0.08 -10.06 16 28 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 33 H 0.06 1.13 8.00 -51.93 -0.42 0.71 16 34 H 0.05 0.76 8.03 -51.93 -0.42 0.34 16 35 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 36 H 0.03 0.57 8.10 -51.93 -0.42 0.14 16 37 H 0.12 2.76 5.32 -51.93 -0.28 2.48 16 38 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 39 H 0.11 2.09 7.38 -51.93 -0.38 1.71 16 40 H 0.19 1.75 7.51 -52.49 -0.39 1.36 16 41 H 0.16 1.35 7.67 -52.49 -0.40 0.95 16 42 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -30.14 375.47 -6.97 -37.11 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.21 Total: 2.59 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -0.71 Total: 11.41 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.04 Total: -40.99 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.72 Total: -31.47 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.14 -6.97 -37.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654552737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.880 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds