Wall clock time and date at job start Tue Mar 31 2020 22:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99873 * 2 1 4 4 O 1.20820 * 120.00268 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99962 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47246 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47122 * 180.02562 * 6 5 3 8 8 C 1.36944 * 119.99823 * 269.99947 * 7 6 5 9 9 H 1.07993 * 119.99782 * 326.21446 * 8 7 6 10 10 C 1.38805 * 119.99785 * 146.21296 * 8 7 6 11 11 N 1.31618 * 120.00094 * 337.69372 * 10 8 7 12 12 Si 1.86800 * 119.99990 * 157.68876 * 10 8 7 13 13 H 1.48496 * 109.47174 * 60.00002 * 12 10 8 14 14 H 1.48504 * 109.47434 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47079 * 300.00127 * 12 10 8 16 16 C 1.46494 * 120.00036 * 89.99833 * 7 6 5 17 17 C 1.53000 * 109.47057 * 85.78985 * 16 7 6 18 18 N 1.46499 * 109.47581 * 179.97438 * 17 16 7 19 19 C 1.35762 * 119.62448 * 89.99542 * 18 17 16 20 20 C 1.35346 * 120.70163 * 180.02562 * 19 18 17 21 21 N 1.48009 * 120.02566 * 180.02562 * 20 19 18 22 22 O 1.21797 * 119.99954 * 359.97438 * 21 20 19 23 23 O 1.21802 * 119.99800 * 179.97438 * 21 20 19 24 24 C 1.40193 * 119.95264 * 359.97438 * 20 19 18 25 25 C 1.36410 * 119.26195 * 359.97438 * 24 20 19 26 26 C 1.34661 * 119.62655 * 269.73026 * 18 17 16 27 27 O 1.22066 * 119.98234 * 359.97182 * 26 18 17 28 28 H 1.09002 * 109.47284 * 60.00021 * 1 2 3 29 29 H 1.08997 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47164 * 300.00638 * 1 2 3 31 31 H 1.08998 * 109.46705 * 59.99508 * 5 3 2 32 32 H 1.09003 * 109.47218 * 300.00058 * 5 3 2 33 33 H 1.09004 * 109.47201 * 60.00506 * 6 5 3 34 34 H 1.09003 * 109.47195 * 300.00239 * 6 5 3 35 35 H 0.97004 * 120.00162 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.47254 * 325.78844 * 16 7 6 37 37 H 1.08997 * 109.47084 * 205.78205 * 16 7 6 38 38 H 1.08999 * 109.46897 * 299.99952 * 17 16 7 39 39 H 1.09005 * 109.47435 * 59.99667 * 17 16 7 40 40 H 1.07997 * 119.65065 * 0.02562 * 19 18 17 41 41 H 1.07997 * 120.37209 * 180.02562 * 24 20 19 42 42 H 1.07995 * 120.34907 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.1469 2.8552 1.1857 9 1 5.7170 3.3539 2.0417 10 6 7.3924 2.2511 1.2875 11 7 7.7320 1.2974 0.4464 12 14 8.5868 2.7917 2.6182 13 1 7.9725 2.5745 3.9526 14 1 9.8374 1.9979 2.5133 15 1 8.9000 4.2331 2.4463 16 6 6.1946 2.8563 -1.2689 17 6 6.2824 4.3013 -1.7643 18 7 7.0144 4.3391 -3.0328 19 6 6.3366 4.2160 -4.2027 20 6 6.9910 4.2474 -5.3870 21 7 6.2371 4.1123 -6.6535 22 8 5.0274 3.9724 -6.6302 23 8 6.8265 4.1411 -7.7191 24 6 8.3833 4.4090 -5.4133 25 6 9.0625 4.5336 -4.2369 26 6 8.3512 4.5010 -3.0253 27 8 8.9459 4.6157 -1.9655 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9563 0.7805 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 3.6101 3.2367 0.8894 34 1 3.6107 3.2356 -0.8906 35 1 8.6023 0.8749 0.5178 36 1 5.6713 2.2499 -2.0082 37 1 7.1997 2.4615 -1.1207 38 1 5.2773 4.6962 -1.9125 39 1 6.8057 4.9077 -1.0251 40 1 5.2639 4.0917 -4.1881 41 1 8.9123 4.4354 -6.3545 42 1 10.1351 4.6593 -4.2367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654552737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:44 Heat of formation + Delta-G solvation = -79.996507 kcal Electronic energy + Delta-G solvation = -29555.057894 eV Core-core repulsion = 25118.846105 eV Total energy + Delta-G solvation = -4436.211789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.40149 -42.51118 -41.41041 -38.52345 -38.26642 -37.61341 -37.41008 -35.99152 -33.98249 -32.22172 -32.07508 -30.17272 -28.50696 -27.45839 -26.54632 -25.67816 -24.70977 -23.55977 -22.52670 -21.33806 -20.55275 -19.94297 -19.01174 -18.62069 -18.55567 -18.48511 -18.13266 -17.54243 -17.47516 -17.09394 -16.94535 -16.61746 -15.81406 -15.72215 -15.37494 -14.77091 -14.64629 -14.55105 -14.30799 -13.85546 -13.69851 -13.61916 -13.58326 -13.20533 -13.04541 -12.81894 -12.73225 -12.66608 -12.34265 -12.31818 -12.22387 -12.20140 -11.83768 -11.75812 -11.66126 -11.52115 -11.48687 -11.38992 -10.60813 -9.67997 -8.79028 -7.96727 -5.52988 -1.05236 -0.43754 0.18443 0.57046 1.22235 1.31522 1.42168 1.48719 1.50488 1.85518 2.20206 2.45305 3.10174 3.12155 3.19651 3.42862 3.49465 3.75054 3.95445 4.02572 4.20346 4.23271 4.34563 4.36894 4.38005 4.44268 4.45804 4.56722 4.65333 4.71623 4.76074 4.92053 4.99136 5.04178 5.21220 5.28985 5.43620 5.52952 5.62858 5.67819 6.34173 6.56072 6.56554 6.78100 7.03396 7.70797 8.17759 9.00602 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007464 B = 0.004266 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3750.684506 B = 6561.418540 C = 9814.496238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.372 6.372 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.122 4.122 6 C 0.161 3.839 7 N -0.581 5.581 8 C -0.273 4.273 9 H 0.065 0.935 10 C -0.019 4.019 11 N -0.903 5.903 12 Si 0.944 3.056 13 H -0.270 1.270 14 H -0.297 1.297 15 H -0.288 1.288 16 C 0.133 3.867 17 C 0.071 3.929 18 N -0.469 5.469 19 C 0.254 3.746 20 C -0.165 4.165 21 N 0.058 4.942 22 O -0.187 6.187 23 O -0.173 6.173 24 C 0.020 3.980 25 C -0.224 4.224 26 C 0.500 3.500 27 O -0.555 6.555 28 H 0.064 0.936 29 H 0.129 0.871 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.251 0.749 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.218 0.782 41 H 0.187 0.813 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.817 2.209 -10.357 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.317 3.683 4 O -0.426 6.426 5 C -0.163 4.163 6 C 0.035 3.965 7 N -0.301 5.301 8 C -0.403 4.403 9 H 0.083 0.917 10 C -0.218 4.218 11 N -0.546 5.546 12 Si 0.773 3.227 13 H -0.195 1.195 14 H -0.224 1.224 15 H -0.215 1.215 16 C 0.005 3.995 17 C -0.051 4.051 18 N -0.175 5.175 19 C 0.116 3.884 20 C -0.256 4.256 21 N 0.571 4.429 22 O -0.396 6.396 23 O -0.386 6.386 24 C -0.001 4.001 25 C -0.247 4.247 26 C 0.302 3.698 27 O -0.436 6.436 28 H 0.083 0.917 29 H 0.147 0.853 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.235 0.765 41 H 0.204 0.796 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.170 2.525 -8.954 11.164 hybrid contribution 0.533 0.001 0.626 0.822 sum -5.637 2.526 -8.329 10.369 Atomic orbital electron populations 1.23533 0.75030 1.05521 1.02547 1.86556 1.25039 1.33420 1.83781 1.24176 0.92344 0.81018 0.70759 1.90602 1.67876 1.37012 1.47092 1.22112 0.85325 1.03492 1.05348 1.20862 0.83132 0.91416 1.01076 1.43853 1.00764 1.83797 1.01664 1.19216 1.00837 1.28986 0.91270 0.91696 1.25576 1.01327 0.95359 0.99561 1.70007 1.21277 1.23103 1.40221 0.85708 0.78956 0.77605 0.80416 1.19515 1.22389 1.21498 1.21150 1.00528 0.91074 0.86725 1.23202 0.97103 1.03253 0.81565 1.46013 1.09494 1.53861 1.08094 1.22109 1.01254 0.82146 0.82901 1.20065 0.93487 1.28456 0.83631 1.43099 1.00802 0.96821 1.02208 1.94553 0.96447 1.54433 1.94207 1.94531 1.71173 1.55040 1.17864 1.21235 0.89712 0.87762 1.01374 1.22159 1.02937 1.10884 0.88684 1.18035 0.81184 0.78354 0.92191 1.91068 1.66973 1.50881 1.34636 0.91681 0.85307 0.92103 0.88173 0.89013 0.93124 0.91258 0.93977 0.93449 0.90794 0.86008 0.90114 0.76550 0.79557 0.79866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.37 -10.21 10.57 -51.40 -0.54 -10.75 16 3 C 0.47 14.67 7.96 71.24 0.57 15.24 16 4 O -0.54 -18.31 15.73 21.98 0.35 -17.97 16 5 C -0.12 -4.06 6.13 29.85 0.18 -3.88 16 6 C 0.16 5.68 4.98 86.38 0.43 6.11 16 7 N -0.58 -24.51 2.45 -702.03 -1.72 -26.23 16 8 C -0.27 -13.48 9.49 84.03 0.80 -12.68 16 9 H 0.07 3.21 7.92 -2.91 -0.02 3.19 16 10 C -0.02 -1.00 4.93 84.86 0.42 -0.58 16 11 N -0.90 -49.22 11.32 21.65 0.24 -48.97 16 12 Si 0.94 43.91 29.61 68.60 2.03 45.94 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 15 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 16 C 0.13 5.20 5.58 86.38 0.48 5.68 16 17 C 0.07 2.25 5.66 86.38 0.49 2.74 16 18 N -0.47 -12.97 2.58 -650.98 -1.68 -14.65 16 19 C 0.25 5.27 9.81 83.42 0.82 6.09 16 20 C -0.17 -3.47 6.82 36.18 0.25 -3.23 16 21 N 0.06 1.37 4.45 -46.93 -0.21 1.16 16 22 O -0.19 -4.66 18.39 18.89 0.35 -4.31 16 23 O -0.17 -4.28 18.50 18.88 0.35 -3.93 16 24 C 0.02 0.38 9.59 22.32 0.21 0.60 16 25 C -0.22 -5.20 9.99 22.40 0.22 -4.98 16 26 C 0.50 16.10 7.41 84.82 0.63 16.73 16 27 O -0.55 -23.84 16.63 -5.53 -0.09 -23.93 16 28 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.05 1.88 8.00 -2.39 -0.02 1.86 16 34 H 0.07 2.11 8.03 -2.39 -0.02 2.10 16 35 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 36 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 37 H 0.07 3.65 5.32 -2.39 -0.01 3.63 16 38 H 0.12 2.91 8.01 -2.39 -0.02 2.89 16 39 H 0.08 3.11 7.38 -2.38 -0.02 3.10 16 40 H 0.22 3.18 7.51 -2.91 -0.02 3.16 16 41 H 0.19 2.44 7.67 -2.91 -0.02 2.42 16 42 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -67.73 375.47 6.82 -60.91 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.06 Total: 13.19 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 6.69 Total: 29.56 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -3.37 Total: -88.69 kcal Atomic # 8 Polarization: -61.31 SS G_CDS: 0.41 Total: -60.90 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -67.73 6.82 -60.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654552737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.084 kcal (2) G-P(sol) polarization free energy of solvation -67.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds