Wall clock time and date at job start Tue Mar 31 2020 22:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46799 * 2 1 4 4 N 1.46499 * 109.47038 * 120.00422 * 2 1 3 5 5 C 1.34778 * 119.99621 * 274.99969 * 4 2 1 6 6 O 1.21550 * 119.99954 * 0.02562 * 5 4 2 7 7 C 1.47870 * 119.99768 * 180.02562 * 5 4 2 8 8 N 1.34549 * 126.05158 * 179.97438 * 7 5 4 9 9 C 1.30862 * 107.27315 * 179.97438 * 8 7 5 10 10 N 1.34584 * 107.62652 * 0.02562 * 9 8 7 11 11 H 0.97000 * 125.75481 * 179.73959 * 10 9 8 12 12 N 1.28852 * 108.50061 * 359.97438 * 10 9 8 13 13 C 1.52998 * 109.47431 * 240.00470 * 2 1 3 14 14 C 1.53939 * 113.74453 * 158.73944 * 13 2 1 15 15 N 1.47820 * 86.03770 * 222.08425 * 14 13 2 16 16 C 1.34776 * 134.45627 * 204.64506 * 15 14 13 17 17 O 1.21280 * 119.99907 * 179.86703 * 16 15 14 18 18 C 1.50711 * 119.99966 * 359.86717 * 16 15 14 19 19 S 1.80995 * 109.46749 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99696 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99902 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00101 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99903 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00069 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47148 * 59.99757 * 24 22 20 26 26 H 1.48499 * 109.47106 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46908 * 299.99627 * 24 22 20 28 28 C 1.47574 * 91.05097 * 24.54941 * 15 14 13 29 29 H 1.09005 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47431 * 299.99585 * 1 2 3 31 31 H 1.09007 * 109.46997 * 59.99813 * 1 2 3 32 32 H 0.97000 * 120.00056 * 95.00115 * 4 2 1 33 33 H 1.07997 * 126.19071 * 179.97438 * 9 8 7 34 34 H 1.08998 * 112.94405 * 290.33426 * 13 2 1 35 35 H 1.08997 * 113.77043 * 336.34564 * 14 13 2 36 36 H 1.09004 * 113.76859 * 107.74727 * 14 13 2 37 37 H 1.09002 * 109.46428 * 299.99962 * 18 16 15 38 38 H 1.08991 * 109.47034 * 59.99752 * 18 16 15 39 39 H 0.96996 * 119.99765 * 180.02562 * 23 22 20 40 40 H 1.09000 * 113.77066 * 221.15363 * 28 15 14 41 41 H 1.09004 * 113.87441 * 89.76628 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8574 1.1609 2.4118 7 6 2.6404 -0.7153 3.5643 8 7 2.8155 -0.1659 4.7799 9 6 3.2629 -1.1073 5.5711 10 7 3.3644 -2.2359 4.8449 11 1 3.6740 -3.0947 5.1725 12 7 2.9856 -1.9820 3.6398 13 6 2.0401 -0.7211 -1.2493 14 6 3.4848 -0.3519 -1.6317 15 7 2.9978 -0.3174 -3.0269 16 6 3.5782 -0.4729 -4.2333 17 8 2.9103 -0.3920 -5.2425 18 6 5.0570 -0.7472 -4.3284 19 16 5.5308 -0.9042 -6.0682 20 6 7.2565 -1.2118 -5.8887 21 1 7.6983 -1.2520 -4.9040 22 6 8.0483 -1.4013 -7.0129 23 7 7.5099 -1.3517 -8.2130 24 14 9.8776 -1.7280 -6.8226 25 1 10.0793 -2.9668 -6.0287 26 1 10.4929 -1.8946 -8.1638 27 1 10.5149 -0.5831 -6.1239 28 6 1.6214 -0.0470 -2.5685 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2490 -1.6319 1.1525 33 1 3.5074 -0.9982 6.6174 34 1 1.8529 -1.7947 -1.2264 35 1 3.8047 0.6192 -1.2540 36 1 4.2071 -1.1446 -1.4367 37 1 5.6090 0.0759 -3.8747 38 1 5.2892 -1.6735 -3.8031 39 1 8.0632 -1.4845 -8.9986 40 1 0.8586 -0.5967 -3.1200 41 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678695027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:15 Heat of formation + Delta-G solvation = 55.707131 kcal Electronic energy + Delta-G solvation = -25626.876317 eV Core-core repulsion = 21671.594701 eV Total energy + Delta-G solvation = -3955.281616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.99334 -40.65581 -39.54752 -37.66554 -35.42179 -33.92974 -32.56593 -32.42891 -31.16401 -29.91120 -27.90148 -26.21915 -25.43501 -25.42117 -23.68967 -23.13403 -20.93939 -20.74702 -19.38798 -19.06229 -17.87689 -17.63879 -16.97509 -16.82776 -16.57945 -15.53456 -15.42205 -15.31153 -15.01533 -14.80482 -14.51118 -14.12105 -13.95430 -13.63267 -13.07156 -12.87598 -12.76122 -12.72024 -12.50532 -12.42030 -11.97571 -11.80425 -11.25419 -11.18314 -11.07663 -11.04384 -11.04069 -10.99450 -10.77078 -10.56189 -10.28940 -9.83022 -9.58344 -9.30580 -9.06070 -8.59247 -8.24190 -6.50458 -6.21463 -3.92326 0.82921 1.62042 2.04195 2.46191 2.74410 2.95547 3.07126 3.23111 3.23834 3.28555 3.54979 3.70971 3.92324 4.05634 4.20271 4.33398 4.39704 4.60582 4.78467 4.96210 5.03558 5.12907 5.13894 5.28997 5.34677 5.37198 5.40820 5.48953 5.58485 5.59603 5.69252 5.82477 5.89754 5.92689 6.04356 6.07640 6.14242 6.15042 6.96314 7.44783 7.59131 7.76809 7.82002 8.35014 8.55292 9.23460 10.85936 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.002129 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.520487 B =13145.908884 C =14845.296431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 H 0.099 0.901 4 N -0.708 5.708 5 C 0.616 3.384 6 O -0.507 6.507 7 C 0.151 3.849 8 N -0.462 5.462 9 C 0.198 3.802 10 N -0.397 5.397 11 H 0.453 0.547 12 N -0.275 5.275 13 C -0.134 4.134 14 C 0.108 3.892 15 N -0.652 5.652 16 C 0.556 3.444 17 O -0.515 6.515 18 C -0.145 4.145 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.121 3.879 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.408 0.592 33 H 0.232 0.768 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.269 0.731 40 H 0.085 0.915 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.472 -3.414 30.100 32.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.116 0.884 4 N -0.361 5.361 5 C 0.397 3.603 6 O -0.377 6.377 7 C -0.130 4.130 8 N -0.186 5.186 9 C -0.100 4.100 10 N -0.120 5.120 11 H 0.300 0.700 12 N -0.117 5.117 13 C -0.153 4.153 14 C -0.015 4.015 15 N -0.391 5.391 16 C 0.346 3.654 17 O -0.389 6.389 18 C -0.296 4.296 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.002 4.002 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.244 0.756 33 H 0.248 0.752 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.704 -2.364 27.660 30.530 hybrid contribution 2.501 -1.412 1.968 3.481 sum -10.204 -3.776 29.628 31.563 Atomic orbital electron populations 1.22186 0.94300 1.02689 1.03156 1.21056 0.94720 0.97394 0.81918 0.88350 1.45801 1.66945 1.14554 1.08753 1.16259 0.77859 0.85483 0.80680 1.90857 1.48599 1.14465 1.83799 1.23875 1.05970 0.87822 0.95314 1.71326 1.16855 1.29993 1.00442 1.26786 1.00329 0.81811 1.01057 1.45149 1.46446 1.14075 1.06371 0.70021 1.74255 1.16720 1.18049 1.02658 1.23516 0.96689 1.01645 0.93480 1.23268 0.96190 1.02025 0.80012 1.50031 1.10585 1.73379 1.05073 1.20038 0.89263 0.75276 0.80859 1.90713 1.64747 1.49514 1.33906 1.23473 0.93459 1.04403 1.08223 1.85397 1.08401 1.93488 0.96081 1.22814 0.93209 1.56798 0.95544 0.91010 1.24996 0.99432 0.94708 0.94450 1.70009 1.36323 1.46276 0.97649 0.86218 0.82824 0.78898 0.77521 1.19959 1.20786 1.19932 1.23001 0.86315 1.00453 0.90444 0.92043 0.91737 0.90846 0.75624 0.75202 0.87206 0.89549 0.89754 0.89369 0.89392 0.92114 0.89661 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 9.31 37.16 0.35 -0.77 16 2 C 0.15 1.14 2.38 -67.93 -0.16 0.97 16 3 H 0.10 0.86 7.42 -51.93 -0.39 0.48 16 4 N -0.71 -5.37 5.07 -54.74 -0.28 -5.65 16 5 C 0.62 6.54 7.80 -12.32 -0.10 6.45 16 6 O -0.51 -7.13 16.75 5.32 0.09 -7.04 16 7 C 0.15 1.47 7.96 -156.35 -1.24 0.22 16 8 N -0.46 -4.42 11.41 -12.37 -0.14 -4.56 16 9 C 0.20 0.81 13.14 -90.49 -1.19 -0.38 16 10 N -0.40 -1.33 6.93 29.56 0.20 -1.12 16 11 H 0.45 -0.43 8.96 -190.21 -1.71 -2.14 16 12 N -0.28 -1.94 11.98 32.07 0.38 -1.56 16 13 C -0.13 -1.02 3.47 -89.69 -0.31 -1.33 16 14 C 0.11 1.07 8.19 -2.84 -0.02 1.05 16 15 N -0.65 -9.23 3.61 -178.13 -0.64 -9.87 16 16 C 0.56 10.95 8.08 -10.98 -0.09 10.86 16 17 O -0.51 -12.23 16.59 5.56 0.09 -12.13 16 18 C -0.15 -3.04 5.91 36.01 0.21 -2.83 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 24 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 C 0.12 1.25 7.54 -2.97 -0.02 1.23 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.44 7.52 -51.93 -0.39 0.05 16 32 H 0.41 2.41 8.30 -40.82 -0.34 2.07 16 33 H 0.23 -0.26 8.06 -52.49 -0.42 -0.68 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.80 7.99 -51.93 -0.41 0.39 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -41.48 375.22 -10.10 -51.58 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -6.58 Total: -4.69 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.38 Total: 2.38 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.26 Total: -48.35 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.18 Total: -19.18 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -41.48 -10.10 -51.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678695027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.286 kcal (2) G-P(sol) polarization free energy of solvation -41.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds