Wall clock time and date at job start Tue Mar 31 2020 22:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46799 * 2 1 4 4 N 1.46499 * 109.47038 * 120.00422 * 2 1 3 5 5 C 1.34778 * 119.99621 * 274.99969 * 4 2 1 6 6 O 1.21550 * 119.99954 * 0.02562 * 5 4 2 7 7 C 1.47870 * 119.99768 * 180.02562 * 5 4 2 8 8 N 1.34549 * 126.05158 * 179.97438 * 7 5 4 9 9 C 1.30862 * 107.27315 * 179.97438 * 8 7 5 10 10 N 1.34584 * 107.62652 * 0.02562 * 9 8 7 11 11 H 0.97000 * 125.75481 * 179.73959 * 10 9 8 12 12 N 1.28852 * 108.50061 * 359.97438 * 10 9 8 13 13 C 1.52998 * 109.47431 * 240.00470 * 2 1 3 14 14 C 1.53939 * 113.74453 * 158.73944 * 13 2 1 15 15 N 1.47820 * 86.03770 * 222.08425 * 14 13 2 16 16 C 1.34776 * 134.45627 * 204.64506 * 15 14 13 17 17 O 1.21280 * 119.99907 * 179.86703 * 16 15 14 18 18 C 1.50711 * 119.99966 * 359.86717 * 16 15 14 19 19 S 1.80995 * 109.46749 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99696 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99902 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00101 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99903 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00069 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47148 * 59.99757 * 24 22 20 26 26 H 1.48499 * 109.47106 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46908 * 299.99627 * 24 22 20 28 28 C 1.47574 * 91.05097 * 24.54941 * 15 14 13 29 29 H 1.09005 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47431 * 299.99585 * 1 2 3 31 31 H 1.09007 * 109.46997 * 59.99813 * 1 2 3 32 32 H 0.97000 * 120.00056 * 95.00115 * 4 2 1 33 33 H 1.07997 * 126.19071 * 179.97438 * 9 8 7 34 34 H 1.08998 * 112.94405 * 290.33426 * 13 2 1 35 35 H 1.08997 * 113.77043 * 336.34564 * 14 13 2 36 36 H 1.09004 * 113.76859 * 107.74727 * 14 13 2 37 37 H 1.09002 * 109.46428 * 299.99962 * 18 16 15 38 38 H 1.08991 * 109.47034 * 59.99752 * 18 16 15 39 39 H 0.96996 * 119.99765 * 180.02562 * 23 22 20 40 40 H 1.09000 * 113.77066 * 221.15363 * 28 15 14 41 41 H 1.09004 * 113.87441 * 89.76628 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8574 1.1609 2.4118 7 6 2.6404 -0.7153 3.5643 8 7 2.8155 -0.1659 4.7799 9 6 3.2629 -1.1073 5.5711 10 7 3.3644 -2.2359 4.8449 11 1 3.6740 -3.0947 5.1725 12 7 2.9856 -1.9820 3.6398 13 6 2.0401 -0.7211 -1.2493 14 6 3.4848 -0.3519 -1.6317 15 7 2.9978 -0.3174 -3.0269 16 6 3.5782 -0.4729 -4.2333 17 8 2.9103 -0.3920 -5.2425 18 6 5.0570 -0.7472 -4.3284 19 16 5.5308 -0.9042 -6.0682 20 6 7.2565 -1.2118 -5.8887 21 1 7.6983 -1.2520 -4.9040 22 6 8.0483 -1.4013 -7.0129 23 7 7.5099 -1.3517 -8.2130 24 14 9.8776 -1.7280 -6.8226 25 1 10.0793 -2.9668 -6.0287 26 1 10.4929 -1.8946 -8.1638 27 1 10.5149 -0.5831 -6.1239 28 6 1.6214 -0.0470 -2.5685 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2490 -1.6319 1.1525 33 1 3.5074 -0.9982 6.6174 34 1 1.8529 -1.7947 -1.2264 35 1 3.8047 0.6192 -1.2540 36 1 4.2071 -1.1446 -1.4367 37 1 5.6090 0.0759 -3.8747 38 1 5.2892 -1.6735 -3.8031 39 1 8.0632 -1.4845 -8.9986 40 1 0.8586 -0.5967 -3.1200 41 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678695027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:15 Heat of formation + Delta-G solvation = 23.552612 kcal Electronic energy + Delta-G solvation = -25628.270642 eV Core-core repulsion = 21671.594701 eV Total energy + Delta-G solvation = -3956.675940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.43949 -41.59778 -40.49503 -38.98538 -36.26434 -34.60174 -34.42192 -33.22623 -32.07595 -31.06007 -29.00024 -27.71327 -27.04201 -26.07736 -24.31604 -23.71247 -21.66172 -21.51478 -20.39281 -19.78914 -19.52808 -18.46522 -17.97086 -17.68412 -17.35419 -16.91175 -16.82336 -16.59841 -15.89107 -15.80890 -15.71177 -15.46598 -14.85595 -14.69180 -14.59202 -14.05315 -13.76406 -13.60356 -13.35863 -13.21485 -13.19734 -13.05071 -12.87540 -12.71458 -12.63082 -11.88585 -11.85728 -11.76651 -11.75855 -11.59328 -11.34030 -11.14354 -10.92062 -10.75996 -10.31562 -10.17983 -9.76802 -8.70016 -8.35841 -6.15057 0.27990 1.17479 1.20059 1.41801 1.43113 1.52608 1.55097 1.64053 1.96182 2.03309 2.26132 2.27332 2.97941 3.10547 3.21137 3.32129 3.56126 3.62414 3.66040 4.03619 4.09617 4.12989 4.23105 4.37550 4.43399 4.46417 4.50258 4.57516 4.68941 4.79301 4.88107 4.90853 5.00976 5.16476 5.27410 5.34843 5.39503 5.42634 5.94972 6.17993 6.35225 6.55383 6.96605 7.04758 7.09669 7.11928 8.73252 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.002129 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.520487 B =13145.908884 C =14845.296431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.087 0.913 4 N -0.692 5.692 5 C 0.613 3.387 6 O -0.553 6.553 7 C 0.121 3.879 8 N -0.517 5.517 9 C 0.218 3.782 10 N -0.379 5.379 11 H 0.473 0.527 12 N -0.274 5.274 13 C -0.104 4.104 14 C 0.102 3.898 15 N -0.650 5.650 16 C 0.553 3.447 17 O -0.569 6.569 18 C -0.119 4.119 19 S -0.151 6.151 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.261 1.261 26 H -0.278 1.278 27 H -0.263 1.263 28 C 0.114 3.886 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.419 0.581 33 H 0.280 0.720 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.272 0.728 40 H 0.087 0.913 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 -4.876 33.347 35.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.105 0.895 4 N -0.345 5.345 5 C 0.396 3.604 6 O -0.427 6.427 7 C -0.158 4.158 8 N -0.243 5.243 9 C -0.079 4.079 10 N -0.105 5.105 11 H 0.324 0.676 12 N -0.118 5.118 13 C -0.124 4.124 14 C -0.020 4.020 15 N -0.386 5.386 16 C 0.342 3.658 17 O -0.448 6.448 18 C -0.271 4.271 19 S 0.077 5.923 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.185 1.185 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.008 4.008 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.256 0.744 33 H 0.296 0.704 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.682 -3.883 30.986 33.341 hybrid contribution 2.098 -0.990 1.176 2.601 sum -9.584 -4.873 32.161 33.911 Atomic orbital electron populations 1.22154 0.93498 1.03458 1.02856 1.20962 0.95221 0.96728 0.81599 0.89521 1.45681 1.65932 1.14849 1.08010 1.16506 0.77260 0.85067 0.81560 1.90821 1.50873 1.16381 1.84641 1.23680 1.08094 0.88733 0.95342 1.71262 1.19166 1.32599 1.01229 1.27625 0.97561 0.80582 1.02153 1.45189 1.45030 1.15037 1.05251 0.67593 1.74160 1.16408 1.16827 1.04361 1.23295 0.94571 1.02446 0.92062 1.23641 0.97977 1.03320 0.77032 1.50057 1.12771 1.70909 1.04855 1.19739 0.88495 0.75578 0.81977 1.90686 1.65477 1.52440 1.36184 1.23272 0.95069 1.05822 1.02887 1.85574 1.09612 1.93860 1.03302 1.23147 0.93213 1.56869 0.96257 0.90007 1.26160 1.05121 0.94044 0.93870 1.70179 1.38475 1.47356 0.98684 0.84984 0.75650 0.79384 0.77848 1.18506 1.20282 1.18735 1.23339 0.84372 1.01843 0.91236 0.90730 0.93324 0.89901 0.74392 0.70434 0.85220 0.88513 0.88345 0.88034 0.87546 0.91926 0.89466 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.31 71.98 0.67 -1.26 16 2 C 0.16 2.08 2.38 44.99 0.11 2.19 16 3 H 0.09 1.42 7.42 -2.39 -0.02 1.40 16 4 N -0.69 -9.47 5.07 -445.39 -2.26 -11.73 16 5 C 0.61 12.85 7.80 86.79 0.68 13.53 16 6 O -0.55 -15.96 16.75 -3.87 -0.06 -16.03 16 7 C 0.12 2.25 7.96 137.13 1.09 3.35 16 8 N -0.52 -9.37 11.41 -193.04 -2.20 -11.58 16 9 C 0.22 1.18 13.14 180.30 2.37 3.55 16 10 N -0.38 -1.45 6.93 -60.38 -0.42 -1.87 16 11 H 0.47 -2.53 8.96 -219.80 -1.97 -4.50 16 12 N -0.27 -3.33 11.98 -52.44 -0.63 -3.96 16 13 C -0.10 -1.32 3.47 -10.13 -0.04 -1.35 16 14 C 0.10 1.76 8.19 86.44 0.71 2.46 16 15 N -0.65 -17.43 3.61 -835.87 -3.02 -20.45 16 16 C 0.55 21.74 8.08 87.66 0.71 22.45 16 17 O -0.57 -27.81 16.59 -3.03 -0.05 -27.86 16 18 C -0.12 -4.98 5.91 71.24 0.42 -4.56 16 19 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 20 C -0.55 -31.68 9.50 67.96 0.65 -31.03 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 24 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 28 C 0.11 2.14 7.54 86.49 0.65 2.79 16 29 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.84 7.52 -2.38 -0.02 0.82 16 32 H 0.42 3.99 8.30 -92.71 -0.77 3.22 16 33 H 0.28 -1.80 8.06 -2.91 -0.02 -1.82 16 34 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 1.56 7.99 -2.39 -0.02 1.54 16 36 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 38 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 39 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.10 1.64 8.10 -2.38 -0.02 1.62 16 Total: -1.00 -95.80 375.22 -0.66 -96.45 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -1.65 Total: 3.77 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 8.48 Total: 13.32 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -8.24 Total: -105.72 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -0.12 Total: -43.89 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -95.80 -0.66 -96.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678695027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.008 kcal (2) G-P(sol) polarization free energy of solvation -95.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds