Wall clock time and date at job start Tue Mar 31 2020 22:12:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46510 * 1
3 3 C 1.34810 * 126.59395 * 2 1
4 4 C 1.36591 * 106.83892 * 180.02562 * 3 2 1
5 5 C 1.47527 * 125.77209 * 179.97438 * 4 3 2
6 6 O 1.21590 * 119.99627 * 359.97438 * 5 4 3
7 7 N 1.34774 * 120.00098 * 179.97438 * 5 4 3
8 8 C 1.47024 * 125.64810 * 0.03912 * 7 5 4
9 9 C 1.54364 * 107.28778 * 181.05866 * 8 7 5
10 10 C 1.55150 * 102.92467 * 22.13781 * 9 8 7
11 11 H 1.08998 * 111.00640 * 82.64069 * 10 9 8
12 12 N 1.46500 * 111.00730 * 206.45445 * 10 9 8
13 13 C 1.34779 * 120.00169 * 201.81530 * 12 10 9
14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 10
15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 10
16 16 S 1.81000 * 109.46881 * 180.02562 * 15 13 12
17 17 C 1.76206 * 99.99929 * 180.02562 * 16 15 13
18 18 H 1.07998 * 119.99720 * 359.97438 * 17 16 15
19 19 C 1.38796 * 119.99847 * 180.02562 * 17 16 15
20 20 N 1.31625 * 120.00398 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16
22 22 H 1.48501 * 109.47367 * 59.99618 * 21 19 17
23 23 H 1.48498 * 109.47311 * 180.02562 * 21 19 17
24 24 H 1.48504 * 109.46831 * 299.99623 * 21 19 17
25 25 C 1.47419 * 125.65162 * 179.97438 * 7 5 4
26 26 N 1.34404 * 108.45877 * 0.23634 * 4 3 2
27 27 N 1.28757 * 109.52154 * 359.59458 * 26 4 3
28 28 H 1.08995 * 109.47272 * 89.99661 * 1 2 3
29 29 H 1.08998 * 109.46705 * 210.00314 * 1 2 3
30 30 H 1.09003 * 109.46970 * 330.00341 * 1 2 3
31 31 H 1.08001 * 126.58035 * 359.97438 * 3 2 1
32 32 H 1.09004 * 109.88050 * 300.44159 * 8 7 5
33 33 H 1.09002 * 109.88732 * 61.60637 * 8 7 5
34 34 H 1.09002 * 110.70704 * 263.78754 * 9 8 7
35 35 H 1.09000 * 110.75869 * 140.50384 * 9 8 7
36 36 H 0.96996 * 119.99986 * 21.82127 * 12 10 9
37 37 H 1.09000 * 109.47247 * 60.00371 * 15 13 12
38 38 H 1.09001 * 109.47358 * 299.99798 * 15 13 12
39 39 H 0.96996 * 120.00393 * 180.02562 * 20 19 17
40 40 H 1.09005 * 110.36922 * 37.06631 * 25 7 5
41 41 H 1.09000 * 110.36549 * 274.74546 * 25 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2688 1.0824 0.0000
4 6 3.5543 0.6207 -0.0006
5 6 4.7705 1.4557 -0.0013
6 8 4.6756 2.6679 -0.0019
7 7 5.9867 0.8749 -0.0013
8 6 6.2451 -0.5724 -0.0015
9 6 7.7764 -0.7650 0.0258
10 6 8.2849 0.5795 0.6095
11 1 8.2257 0.5803 1.6979
12 7 9.6501 0.8641 0.1606
13 6 10.4281 1.7106 0.8640
14 8 9.9982 2.2363 1.8688
15 6 11.8323 2.0037 0.4018
16 16 12.6141 3.1664 1.5477
17 6 14.1959 3.3275 0.7882
18 1 14.4185 2.7815 -0.1166
19 6 15.1560 4.1552 1.3535
20 7 14.8849 4.8201 2.4566
21 14 16.8327 4.3265 0.5479
22 1 16.6683 4.8563 -0.8296
23 1 17.6701 5.2613 1.3417
24 1 17.4929 2.9975 0.4917
25 6 7.2782 1.5856 -0.0026
26 7 3.5239 -0.7230 -0.0062
27 7 2.3009 -1.1257 -0.0005
28 1 -0.3633 0.0001 -1.0276
29 1 -0.3633 -0.8900 0.5139
30 1 -0.3633 0.8900 0.5138
31 1 1.9561 2.1161 -0.0004
32 1 5.7989 -1.0287 0.8822
33 1 5.8304 -1.0230 -0.9032
34 1 8.1634 -0.9192 -0.9814
35 1 8.0498 -1.5958 0.6764
36 1 9.9940 0.4434 -0.6428
37 1 11.8025 2.4411 -0.5961
38 1 12.4070 1.0779 0.3758
39 1 15.5557 5.3989 2.8514
40 1 7.2178 2.4835 0.6125
41 1 7.5694 1.8416 -1.0213
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001687892226.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:12:06
Heat of formation + Delta-G solvation = 39.588158 kcal
Electronic energy + Delta-G solvation = -25636.366595 eV
Core-core repulsion = 21680.386008 eV
Total energy + Delta-G solvation = -3955.980587 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 339.115 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-42.62117 -40.24247 -39.05256 -37.40791 -35.16437 -34.10327 -32.41408 -31.61607
-30.94856 -29.56043 -28.68888 -27.65255 -25.48094 -24.69072 -22.73954 -22.68937
-21.41560 -20.45769 -19.99218 -18.20564 -17.73337 -16.99979 -16.72291 -16.61487
-16.09701 -15.86994 -15.24069 -15.03983 -14.88992 -14.78671 -14.40268 -13.90494
-13.87436 -13.80772 -13.61863 -13.20632 -13.04956 -12.88802 -12.60524 -12.51313
-12.12338 -12.07350 -11.56307 -11.49640 -11.05879 -11.02615 -11.01567 -10.84505
-10.75410 -10.38751 -9.81346 -9.73193 -9.44679 -9.08916 -9.03098 -8.78681
-8.22706 -6.48558 -6.19894 -3.90690 0.69021 1.34432 1.56231 2.55937
2.99359 3.03172 3.08490 3.24978 3.29096 3.32558 3.67973 3.79079
3.85055 4.16660 4.21946 4.32797 4.37892 4.47510 4.58964 4.67634
4.78262 4.89692 4.99660 5.11412 5.15206 5.19595 5.27559 5.50162
5.57484 5.61826 5.71272 5.82983 5.83667 5.89044 5.94850 6.03443
6.14473 6.57668 7.19428 7.47825 7.60651 7.65558 7.87852 8.36489
8.57274 9.25227 10.87441
Molecular weight = 339.12amu
Principal moments of inertia in cm(-1)
A = 0.039190 B = 0.001763 C = 0.001722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 714.287609 B =15878.096889 C =16256.306747
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.087 3.913
2 N -0.364 5.364
3 C 0.095 3.905
4 C -0.097 4.097
5 C 0.618 3.382
6 O -0.534 6.534
7 N -0.603 5.603
8 C 0.112 3.888
9 C -0.140 4.140
10 C 0.137 3.863
11 H 0.107 0.893
12 N -0.728 5.728
13 C 0.533 3.467
14 O -0.512 6.512
15 C -0.154 4.154
16 S -0.059 6.059
17 C -0.537 4.537
18 H 0.072 0.928
19 C 0.074 3.926
20 N -0.867 5.867
21 Si 0.919 3.081
22 H -0.274 1.274
23 H -0.283 1.283
24 H -0.274 1.274
25 C 0.095 3.905
26 N -0.201 5.201
27 N -0.068 5.068
28 H 0.091 0.909
29 H 0.102 0.898
30 H 0.099 0.901
31 H 0.206 0.794
32 H 0.079 0.921
33 H 0.078 0.922
34 H 0.083 0.917
35 H 0.092 0.908
36 H 0.401 0.599
37 H 0.091 0.909
38 H 0.091 0.909
39 H 0.269 0.731
40 H 0.090 0.910
41 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.696 -13.808 -8.413 32.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.149 5.149
3 C -0.062 4.062
4 C -0.236 4.236
5 C 0.404 3.596
6 O -0.410 6.410
7 N -0.336 5.336
8 C -0.011 4.011
9 C -0.179 4.179
10 C 0.030 3.970
11 H 0.125 0.875
12 N -0.383 5.383
13 C 0.320 3.680
14 O -0.386 6.386
15 C -0.304 4.304
16 S 0.168 5.832
17 C -0.685 4.685
18 H 0.090 0.910
19 C -0.135 4.135
20 N -0.503 5.503
21 Si 0.745 3.255
22 H -0.199 1.199
23 H -0.208 1.208
24 H -0.200 1.200
25 C -0.028 4.028
26 N -0.075 5.075
27 N -0.048 5.048
28 H 0.109 0.891
29 H 0.120 0.880
30 H 0.117 0.883
31 H 0.223 0.777
32 H 0.097 0.903
33 H 0.096 0.904
34 H 0.102 0.898
35 H 0.111 0.889
36 H 0.236 0.764
37 H 0.109 0.891
38 H 0.109 0.891
39 H 0.079 0.921
40 H 0.108 0.892
41 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -29.467 -13.638 -6.578 33.130
hybrid contribution 1.421 0.313 -2.127 2.576
sum -28.047 -13.325 -8.705 32.248
Atomic orbital electron populations
1.22227 0.72344 1.05943 1.04887 1.50384 1.09232 1.05672 1.49569
1.23388 0.90061 0.95102 0.97631 1.21363 0.94355 0.90402 1.17465
1.16321 0.80585 0.85922 0.76733 1.90850 1.85956 1.12894 1.51341
1.48060 1.05041 1.08302 1.72231 1.22084 0.95068 0.80553 1.03372
1.23002 0.94447 0.97772 1.02656 1.21957 0.81426 0.93019 1.00614
0.87541 1.45887 1.13042 1.48982 1.30374 1.20388 0.86898 0.77600
0.83149 1.90722 1.74191 1.49020 1.24640 1.23533 0.94858 1.05957
1.06073 1.85424 1.12078 1.53413 1.32329 1.22830 0.99005 1.32702
1.13969 0.90952 1.24985 0.98948 0.94692 0.94906 1.70003 1.34940
1.26850 1.18467 0.86227 0.81929 0.78177 0.79177 1.19943 1.20823
1.19952 1.22741 0.81268 0.96825 1.01989 1.74716 1.12658 1.10232
1.09908 1.82018 0.93543 1.06527 1.22739 0.89103 0.87971 0.88252
0.77682 0.90266 0.90358 0.89823 0.88947 0.76430 0.89087 0.89097
0.92122 0.89193 0.90694
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.10 11.51 59.85 0.69 0.78 16
2 N -0.36 -2.29 4.03 -67.85 -0.27 -2.56 16
3 C 0.10 0.69 11.31 -16.84 -0.19 0.50 16
4 C -0.10 -1.01 6.85 -83.55 -0.57 -1.58 16
5 C 0.62 7.92 7.85 -12.47 -0.10 7.82 16
6 O -0.53 -8.35 17.12 5.29 0.09 -8.26 16
7 N -0.60 -7.05 3.33 -171.71 -0.57 -7.62 16
8 C 0.11 1.01 5.51 -3.04 -0.02 0.99 16
9 C -0.14 -1.09 6.59 -24.88 -0.16 -1.26 16
10 C 0.14 1.57 3.37 -65.77 -0.22 1.35 16
11 H 0.11 1.44 7.63 -51.93 -0.40 1.04 16
12 N -0.73 -9.11 5.21 -51.72 -0.27 -9.37 16
13 C 0.53 9.63 7.85 -10.99 -0.09 9.54 16
14 O -0.51 -11.44 15.55 5.56 0.09 -11.35 16
15 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16
16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16
17 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16
18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16
19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16
20 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16
21 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16
22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
25 C 0.10 1.20 6.60 -2.52 -0.02 1.18 16
26 N -0.20 -2.13 9.78 32.85 0.32 -1.81 16
27 N -0.07 -0.65 13.78 60.35 0.83 0.18 16
28 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16
29 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16
30 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16
31 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16
32 H 0.08 0.72 7.62 -51.93 -0.40 0.33 16
33 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16
34 H 0.08 0.53 8.00 -51.93 -0.42 0.11 16
35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
36 H 0.40 3.72 8.54 -40.82 -0.35 3.37 16
37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16
38 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16
39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16
40 H 0.09 1.37 8.04 -51.93 -0.42 0.95 16
41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
LS Contribution 370.79 15.07 5.59 5.59
Total: -1.00 -38.98 370.79 -6.26 -45.23
By element:
Atomic # 1 Polarization: 4.60 SS G_CDS: -5.30 Total: -0.70 kcal
Atomic # 6 Polarization: 3.84 SS G_CDS: -0.26 Total: 3.58 kcal
Atomic # 7 Polarization: -47.44 SS G_CDS: 0.77 Total: -46.67 kcal
Atomic # 8 Polarization: -19.79 SS G_CDS: 0.18 Total: -19.61 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal
Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -38.98 -6.26 -45.23 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001687892226.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.822 kcal
(2) G-P(sol) polarization free energy of solvation -38.978 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.844 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.234 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.588 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds