Wall clock time and date at job start Tue Mar 31 2020 22:12:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46510 * 1
3 3 C 1.34810 * 126.59395 * 2 1
4 4 C 1.36591 * 106.83892 * 180.02562 * 3 2 1
5 5 C 1.47527 * 125.77209 * 179.97438 * 4 3 2
6 6 O 1.21590 * 119.99627 * 359.97438 * 5 4 3
7 7 N 1.34774 * 120.00098 * 179.97438 * 5 4 3
8 8 C 1.47024 * 125.64810 * 0.03912 * 7 5 4
9 9 C 1.54364 * 107.28778 * 181.05866 * 8 7 5
10 10 C 1.55150 * 102.92467 * 22.13781 * 9 8 7
11 11 H 1.08998 * 111.00640 * 82.64069 * 10 9 8
12 12 N 1.46500 * 111.00730 * 206.45445 * 10 9 8
13 13 C 1.34779 * 120.00169 * 201.81530 * 12 10 9
14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 10
15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 10
16 16 S 1.81000 * 109.46881 * 180.02562 * 15 13 12
17 17 C 1.76206 * 99.99929 * 180.02562 * 16 15 13
18 18 H 1.07998 * 119.99720 * 359.97438 * 17 16 15
19 19 C 1.38796 * 119.99847 * 180.02562 * 17 16 15
20 20 N 1.31625 * 120.00398 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16
22 22 H 1.48501 * 109.47367 * 59.99618 * 21 19 17
23 23 H 1.48498 * 109.47311 * 180.02562 * 21 19 17
24 24 H 1.48504 * 109.46831 * 299.99623 * 21 19 17
25 25 C 1.47419 * 125.65162 * 179.97438 * 7 5 4
26 26 N 1.34404 * 108.45877 * 0.23634 * 4 3 2
27 27 N 1.28757 * 109.52154 * 359.59458 * 26 4 3
28 28 H 1.08995 * 109.47272 * 89.99661 * 1 2 3
29 29 H 1.08998 * 109.46705 * 210.00314 * 1 2 3
30 30 H 1.09003 * 109.46970 * 330.00341 * 1 2 3
31 31 H 1.08001 * 126.58035 * 359.97438 * 3 2 1
32 32 H 1.09004 * 109.88050 * 300.44159 * 8 7 5
33 33 H 1.09002 * 109.88732 * 61.60637 * 8 7 5
34 34 H 1.09002 * 110.70704 * 263.78754 * 9 8 7
35 35 H 1.09000 * 110.75869 * 140.50384 * 9 8 7
36 36 H 0.96996 * 119.99986 * 21.82127 * 12 10 9
37 37 H 1.09000 * 109.47247 * 60.00371 * 15 13 12
38 38 H 1.09001 * 109.47358 * 299.99798 * 15 13 12
39 39 H 0.96996 * 120.00393 * 180.02562 * 20 19 17
40 40 H 1.09005 * 110.36922 * 37.06631 * 25 7 5
41 41 H 1.09000 * 110.36549 * 274.74546 * 25 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2688 1.0824 0.0000
4 6 3.5543 0.6207 -0.0006
5 6 4.7705 1.4557 -0.0013
6 8 4.6756 2.6679 -0.0019
7 7 5.9867 0.8749 -0.0013
8 6 6.2451 -0.5724 -0.0015
9 6 7.7764 -0.7650 0.0258
10 6 8.2849 0.5795 0.6095
11 1 8.2257 0.5803 1.6979
12 7 9.6501 0.8641 0.1606
13 6 10.4281 1.7106 0.8640
14 8 9.9982 2.2363 1.8688
15 6 11.8323 2.0037 0.4018
16 16 12.6141 3.1664 1.5477
17 6 14.1959 3.3275 0.7882
18 1 14.4185 2.7815 -0.1166
19 6 15.1560 4.1552 1.3535
20 7 14.8849 4.8201 2.4566
21 14 16.8327 4.3265 0.5479
22 1 16.6683 4.8563 -0.8296
23 1 17.6701 5.2613 1.3417
24 1 17.4929 2.9975 0.4917
25 6 7.2782 1.5856 -0.0026
26 7 3.5239 -0.7230 -0.0062
27 7 2.3009 -1.1257 -0.0005
28 1 -0.3633 0.0001 -1.0276
29 1 -0.3633 -0.8900 0.5139
30 1 -0.3633 0.8900 0.5138
31 1 1.9561 2.1161 -0.0004
32 1 5.7989 -1.0287 0.8822
33 1 5.8304 -1.0230 -0.9032
34 1 8.1634 -0.9192 -0.9814
35 1 8.0498 -1.5958 0.6764
36 1 9.9940 0.4434 -0.6428
37 1 11.8025 2.4411 -0.5961
38 1 12.4070 1.0779 0.3758
39 1 15.5557 5.3989 2.8514
40 1 7.2178 2.4835 0.6125
41 1 7.5694 1.8416 -1.0213
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001687892226.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:12:06
Heat of formation + Delta-G solvation = 8.634819 kcal
Electronic energy + Delta-G solvation = -25637.708833 eV
Core-core repulsion = 21680.386008 eV
Total energy + Delta-G solvation = -3957.322824 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 339.115 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.25725 -41.28181 -40.31932 -38.48644 -35.73447 -35.24693 -34.56419 -32.52931
-31.82303 -30.71704 -29.48763 -28.38795 -27.62597 -25.57882 -23.51869 -23.24157
-22.37969 -21.73781 -20.82649 -19.84770 -18.84873 -18.09607 -17.60923 -17.40786
-17.08937 -16.86042 -16.84178 -16.36808 -16.29917 -15.71752 -15.59357 -15.20815
-14.74512 -14.50917 -14.44553 -14.24338 -14.14958 -13.88632 -13.81733 -13.47292
-13.21546 -13.15039 -12.85520 -12.84570 -12.62408 -12.55477 -12.17347 -11.86425
-11.71614 -11.38257 -11.33511 -11.10979 -10.98107 -10.43379 -10.26009 -10.24731
-9.74816 -8.64585 -8.32486 -6.10616 0.11088 0.55237 1.12677 1.27406
1.45520 1.46645 1.55117 1.58686 1.77477 2.11775 2.28661 2.33738
3.01645 3.04657 3.31705 3.36194 3.49313 3.59350 3.84818 3.92948
3.98523 4.00519 4.18671 4.28560 4.34742 4.37860 4.42176 4.54704
4.60018 4.68767 4.74073 4.78786 4.83358 4.96525 5.11654 5.15700
5.41710 5.43679 5.46422 6.21604 6.28674 6.50170 6.75177 6.98911
7.08712 7.24156 8.76427
Molecular weight = 339.12amu
Principal moments of inertia in cm(-1)
A = 0.039190 B = 0.001763 C = 0.001722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 714.287609 B =15878.096889 C =16256.306747
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.074 3.926
2 N -0.350 5.350
3 C 0.110 3.890
4 C -0.125 4.125
5 C 0.613 3.387
6 O -0.574 6.574
7 N -0.605 5.605
8 C 0.114 3.886
9 C -0.122 4.122
10 C 0.137 3.863
11 H 0.084 0.916
12 N -0.699 5.699
13 C 0.536 3.464
14 O -0.563 6.563
15 C -0.129 4.129
16 S -0.155 6.155
17 C -0.547 4.547
18 H 0.085 0.915
19 C 0.013 3.987
20 N -0.912 5.912
21 Si 0.999 3.001
22 H -0.262 1.262
23 H -0.280 1.280
24 H -0.261 1.261
25 C 0.098 3.902
26 N -0.214 5.214
27 N -0.091 5.091
28 H 0.109 0.891
29 H 0.110 0.890
30 H 0.128 0.872
31 H 0.234 0.766
32 H 0.077 0.923
33 H 0.089 0.911
34 H 0.111 0.889
35 H 0.112 0.888
36 H 0.422 0.578
37 H 0.112 0.888
38 H 0.115 0.885
39 H 0.271 0.729
40 H 0.052 0.948
41 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.471 -15.847 -10.768 35.151
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.134 5.134
3 C -0.048 4.048
4 C -0.264 4.264
5 C 0.401 3.599
6 O -0.454 6.454
7 N -0.337 5.337
8 C -0.008 4.008
9 C -0.160 4.160
10 C 0.030 3.970
11 H 0.102 0.898
12 N -0.353 5.353
13 C 0.322 3.678
14 O -0.441 6.441
15 C -0.280 4.280
16 S 0.072 5.928
17 C -0.694 4.694
18 H 0.103 0.897
19 C -0.192 4.192
20 N -0.548 5.548
21 Si 0.820 3.180
22 H -0.187 1.187
23 H -0.205 1.205
24 H -0.186 1.186
25 C -0.027 4.027
26 N -0.088 5.088
27 N -0.071 5.071
28 H 0.127 0.873
29 H 0.128 0.872
30 H 0.146 0.854
31 H 0.251 0.749
32 H 0.096 0.904
33 H 0.107 0.893
34 H 0.129 0.871
35 H 0.130 0.870
36 H 0.261 0.739
37 H 0.130 0.870
38 H 0.133 0.867
39 H 0.079 0.921
40 H 0.071 0.929
41 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -30.283 -15.771 -8.985 35.306
hybrid contribution 1.426 0.886 -1.425 2.202
sum -28.857 -14.885 -10.409 34.097
Atomic orbital electron populations
1.22743 0.69218 1.07822 1.06678 1.50715 1.10755 1.04466 1.47485
1.23800 0.89126 0.96364 0.95544 1.21228 0.94514 0.90569 1.20137
1.16708 0.81474 0.85778 0.75971 1.90812 1.86639 1.14547 1.53355
1.48158 1.04482 1.09435 1.71639 1.22217 0.95953 0.78783 1.03856
1.23012 0.93019 0.95630 1.04312 1.21956 0.80254 0.95151 0.99611
0.89784 1.45535 1.12803 1.46898 1.30069 1.20149 0.86718 0.78037
0.82860 1.90717 1.74974 1.51330 1.27054 1.23370 0.95421 1.04708
1.04491 1.85636 1.13754 1.56904 1.36481 1.23188 0.99103 1.32881
1.14260 0.89725 1.26129 1.03581 0.94072 0.95389 1.70180 1.36505
1.27832 1.20326 0.85004 0.76082 0.78649 0.78254 1.18691 1.20544
1.18554 1.22596 0.82409 0.95961 1.01688 1.74666 1.13465 1.10247
1.10414 1.81923 0.93665 1.07946 1.23590 0.87266 0.87153 0.85404
0.74926 0.90428 0.89267 0.87087 0.86971 0.73896 0.86983 0.86699
0.92052 0.92911 0.89829
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 -0.05 11.51 127.77 1.47 1.42 16
2 N -0.35 -3.72 4.03 -368.58 -1.49 -5.21 16
3 C 0.11 1.45 11.31 83.85 0.95 2.39 16
4 C -0.12 -2.57 6.85 40.82 0.28 -2.29 16
5 C 0.61 16.08 7.85 86.69 0.68 16.76 16
6 O -0.57 -18.71 17.12 -4.00 -0.07 -18.78 16
7 N -0.60 -14.20 3.33 -815.43 -2.71 -16.91 16
8 C 0.11 1.88 5.51 86.74 0.48 2.36 16
9 C -0.12 -1.56 6.59 31.79 0.21 -1.35 16
10 C 0.14 3.03 3.37 46.39 0.16 3.19 16
11 H 0.08 2.32 7.63 -2.39 -0.02 2.30 16
12 N -0.70 -16.26 5.21 -435.94 -2.27 -18.54 16
13 C 0.54 19.22 7.85 87.66 0.69 19.91 16
14 O -0.56 -26.10 15.55 -3.04 -0.05 -26.14 16
15 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16
16 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16
17 C -0.55 -31.14 9.50 67.95 0.65 -30.49 16
18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16
19 C 0.01 0.74 5.49 84.86 0.47 1.21 16
20 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16
21 Si 1.00 43.62 29.55 68.60 2.03 45.64 16
22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16
23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16
24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16
25 C 0.10 2.49 6.60 86.86 0.57 3.06 16
26 N -0.21 -4.40 9.78 -49.99 -0.49 -4.89 16
27 N -0.09 -1.63 13.78 37.02 0.51 -1.12 16
28 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16
29 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16
30 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16
31 H 0.23 1.53 8.06 -2.91 -0.02 1.51 16
32 H 0.08 1.34 7.62 -2.39 -0.02 1.32 16
33 H 0.09 1.34 7.73 -2.39 -0.02 1.32 16
34 H 0.11 0.90 8.00 -2.39 -0.02 0.88 16
35 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16
36 H 0.42 6.38 8.54 -92.71 -0.79 5.58 16
37 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16
38 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16
39 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16
40 H 0.05 1.74 8.04 -2.38 -0.02 1.72 16
41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
Total: -1.00 -90.41 370.79 1.90 -88.50
By element:
Atomic # 1 Polarization: 11.40 SS G_CDS: 0.28 Total: 11.68 kcal
Atomic # 6 Polarization: 4.62 SS G_CDS: 7.04 Total: 11.65 kcal
Atomic # 7 Polarization: -96.63 SS G_CDS: -6.16 Total: -102.79 kcal
Atomic # 8 Polarization: -44.80 SS G_CDS: -0.12 Total: -44.92 kcal
Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal
Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal
Total: -90.41 1.90 -88.50 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001687892226.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.138 kcal
(2) G-P(sol) polarization free energy of solvation -90.406 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.731 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.635 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds