Wall clock time and date at job start Tue Mar 31 2020 22:14:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 N 1.28519 * 124.44678 * 2 1
4 4 C 1.31131 * 109.06178 * 179.69020 * 3 2 1
5 5 C 1.40924 * 105.77487 * 0.43424 * 4 3 2
6 6 C 1.47799 * 127.23537 * 179.84074 * 5 4 3
7 7 O 1.21561 * 120.00305 * 359.97438 * 6 5 4
8 8 N 1.34784 * 119.99736 * 179.70875 * 6 5 4
9 9 C 1.47019 * 125.64691 * 359.69101 * 8 6 5
10 10 C 1.54337 * 107.26147 * 178.85174 * 9 8 6
11 11 C 1.55150 * 103.02027 * 338.13566 * 10 9 8
12 12 H 1.08997 * 111.00858 * 277.23433 * 11 10 9
13 13 N 1.46506 * 111.03781 * 153.39995 * 11 10 9
14 14 C 1.34775 * 120.00226 * 161.33355 * 13 11 10
15 15 O 1.21280 * 120.00069 * 359.97438 * 14 13 11
16 16 C 1.50695 * 119.99860 * 180.02562 * 14 13 11
17 17 S 1.81001 * 109.47224 * 179.97438 * 16 14 13
18 18 C 1.76200 * 99.99985 * 179.97438 * 17 16 14
19 19 H 1.07999 * 120.00129 * 359.97438 * 18 17 16
20 20 C 1.38804 * 119.99661 * 180.02562 * 18 17 16
21 21 N 1.31632 * 120.00395 * 359.97438 * 20 18 17
22 22 Si 1.86803 * 119.99729 * 180.02562 * 20 18 17
23 23 H 1.48495 * 109.47161 * 59.99595 * 22 20 18
24 24 H 1.48499 * 109.46767 * 179.97438 * 22 20 18
25 25 H 1.48503 * 109.46921 * 299.99668 * 22 20 18
26 26 C 1.47426 * 125.64612 * 179.97438 * 8 6 5
27 27 N 1.28586 * 124.44510 * 179.97438 * 2 1 3
28 28 H 1.08993 * 109.47066 * 270.02489 * 1 2 3
29 29 H 1.09006 * 109.46711 * 30.02162 * 1 2 3
30 30 H 1.08995 * 109.46834 * 150.02047 * 1 2 3
31 31 H 1.08004 * 127.11274 * 180.27056 * 4 3 2
32 32 H 1.09000 * 109.88145 * 298.39274 * 9 8 6
33 33 H 1.08997 * 109.88249 * 59.56115 * 9 8 6
34 34 H 1.09007 * 110.84502 * 219.66866 * 10 9 8
35 35 H 1.09003 * 110.67176 * 96.52401 * 10 9 8
36 36 H 0.97001 * 119.99773 * 341.33188 * 13 11 10
37 37 H 1.09001 * 109.47233 * 299.99532 * 16 14 13
38 38 H 1.08999 * 109.47559 * 59.99356 * 16 14 13
39 39 H 0.96993 * 120.00535 * 180.02562 * 21 20 18
40 40 H 1.09000 * 110.36316 * 322.92768 * 26 8 6
41 41 H 1.08994 * 110.36888 * 85.14317 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.1919 1.0598 0.0000
4 6 3.4562 0.7119 0.0067
5 6 3.4659 -0.6972 0.0008
6 6 4.6487 -1.5835 0.0014
7 8 5.7664 -1.1056 0.0071
8 7 4.4880 -2.9217 0.0011
9 6 3.1997 -3.6300 0.0066
10 6 3.5081 -5.1419 -0.0256
11 6 4.9443 -5.1933 -0.6103
12 1 4.9254 -5.1364 -1.6986
13 7 5.6518 -6.3955 -0.1624
14 6 6.7407 -6.8248 -0.8305
15 8 7.1347 -6.2163 -1.8028
16 6 7.4680 -8.0618 -0.3701
17 16 8.8753 -8.3765 -1.4640
18 6 9.5249 -9.8333 -0.7153
19 1 9.0466 -10.2507 0.1584
20 6 10.6520 -10.4437 -1.2479
21 7 11.2353 -9.9347 -2.3125
22 14 11.3403 -11.9886 -0.4547
23 1 10.3095 -13.0573 -0.4759
24 1 12.5372 -12.4408 -1.2084
25 1 11.7210 -11.6959 0.9506
26 6 5.5750 -3.9176 0.0011
27 7 2.1923 -1.0604 0.0005
28 1 -0.3633 0.0004 1.0276
29 1 -0.3633 0.8899 -0.5142
30 1 -0.3633 -0.8901 -0.5135
31 1 4.3130 1.3695 0.0126
32 1 2.6443 -3.3822 0.9111
33 1 2.6205 -3.3528 -0.8742
34 1 2.8080 -5.6669 -0.6757
35 1 3.4860 -5.5607 0.9805
36 1 5.3365 -6.8825 0.6150
37 1 7.8254 -7.9149 0.6491
38 1 6.7890 -8.9140 -0.3978
39 1 12.0227 -10.3615 -2.6849
40 1 6.4056 -3.5725 -0.6147
41 1 5.9130 -4.1103 1.0192
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001688003553.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:31
Heat of formation + Delta-G solvation = 53.458488 kcal
Electronic energy + Delta-G solvation = -25772.603108 eV
Core-core repulsion = 21817.223984 eV
Total energy + Delta-G solvation = -3955.379124 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 339.115 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-44.07302 -40.37350 -39.12692 -37.47804 -34.39394 -34.14366 -33.09122 -32.42647
-31.14460 -29.63943 -28.79761 -27.79768 -25.50617 -24.95042 -23.16497 -22.40856
-21.51485 -20.47738 -19.91144 -18.03462 -17.69102 -17.49366 -17.38994 -16.89877
-16.17077 -15.84657 -15.20930 -15.17851 -15.07628 -14.80103 -14.45053 -13.91530
-13.78657 -13.65219 -13.52675 -13.24690 -13.10582 -12.93955 -12.60904 -12.36957
-12.13680 -12.07859 -11.60214 -11.35898 -11.14385 -11.04531 -11.03614 -10.85550
-10.76956 -10.49403 -9.87678 -9.82988 -9.48171 -9.14316 -9.05191 -8.86803
-8.24516 -6.50273 -6.21272 -3.92234 0.90410 1.54634 1.68185 2.48700
2.93363 2.99737 3.04811 3.23760 3.27714 3.30642 3.45660 3.67391
4.05992 4.20436 4.26310 4.40903 4.43540 4.53060 4.65437 4.68286
4.71608 4.93210 5.04226 5.13775 5.16125 5.23155 5.35325 5.42509
5.53828 5.58339 5.62512 5.77982 5.85640 5.88524 5.95584 6.05468
6.11839 6.52528 7.10971 7.58931 7.61291 7.62466 7.83082 8.35012
8.53607 9.23792 10.86046
Molecular weight = 339.12amu
Principal moments of inertia in cm(-1)
A = 0.036527 B = 0.001812 C = 0.001762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 766.374075 B =15450.534453 C =15886.713163
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.103 3.897
2 N -0.145 5.145
3 N -0.291 5.291
4 C 0.038 3.962
5 C -0.041 4.041
6 C 0.622 3.378
7 O -0.520 6.520
8 N -0.604 5.604
9 C 0.112 3.888
10 C -0.140 4.140
11 C 0.138 3.862
12 H 0.105 0.895
13 N -0.729 5.729
14 C 0.533 3.467
15 O -0.511 6.511
16 C -0.154 4.154
17 S -0.059 6.059
18 C -0.537 4.537
19 H 0.072 0.928
20 C 0.074 3.926
21 N -0.867 5.867
22 Si 0.919 3.081
23 H -0.274 1.274
24 H -0.283 1.283
25 H -0.274 1.274
26 C 0.095 3.905
27 N -0.247 5.247
28 H 0.094 0.906
29 H 0.106 0.894
30 H 0.106 0.894
31 H 0.210 0.790
32 H 0.076 0.924
33 H 0.077 0.923
34 H 0.092 0.908
35 H 0.084 0.916
36 H 0.401 0.599
37 H 0.091 0.909
38 H 0.091 0.909
39 H 0.269 0.731
40 H 0.092 0.908
41 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.408 16.964 7.945 32.378
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.036 4.036
2 N -0.048 5.048
3 N -0.131 5.131
4 C -0.146 4.146
5 C -0.203 4.203
6 C 0.407 3.593
7 O -0.394 6.394
8 N -0.338 5.338
9 C -0.011 4.011
10 C -0.178 4.178
11 C 0.031 3.969
12 H 0.123 0.877
13 N -0.384 5.384
14 C 0.320 3.680
15 O -0.384 6.384
16 C -0.304 4.304
17 S 0.168 5.832
18 C -0.685 4.685
19 H 0.090 0.910
20 C -0.136 4.136
21 N -0.502 5.502
22 Si 0.745 3.255
23 H -0.200 1.200
24 H -0.208 1.208
25 H -0.199 1.199
26 C -0.028 4.028
27 N -0.096 5.096
28 H 0.112 0.888
29 H 0.125 0.875
30 H 0.125 0.875
31 H 0.226 0.774
32 H 0.094 0.906
33 H 0.095 0.905
34 H 0.110 0.890
35 H 0.102 0.898
36 H 0.236 0.764
37 H 0.109 0.891
38 H 0.109 0.891
39 H 0.079 0.921
40 H 0.110 0.890
41 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -26.340 18.300 6.164 32.660
hybrid contribution 0.573 -1.896 2.078 2.871
sum -25.766 16.404 8.241 31.637
Atomic orbital electron populations
1.22267 0.69594 1.06344 1.05396 1.48087 1.09282 0.99332 1.48108
1.74042 1.03836 1.15465 1.19718 1.24876 0.94328 0.93583 1.01797
1.22957 0.91146 0.94718 1.11515 1.16195 0.86078 0.79938 0.77041
1.90867 1.23831 1.74376 1.50329 1.48112 1.08932 1.04412 1.72362
1.22041 0.85431 0.90641 1.02975 1.22974 0.96591 0.95503 1.02726
1.21927 0.90267 0.84202 1.00481 0.87683 1.45896 1.30581 1.28254
1.33636 1.20394 0.79388 0.85594 0.82674 1.90726 1.64788 1.56972
1.25948 1.23532 1.03900 0.97048 1.05946 1.85434 1.25938 1.35008
1.36825 1.22824 1.16105 1.12561 1.17028 0.90954 1.24993 0.95697
0.97945 0.94921 1.70003 1.20120 1.39462 1.20644 0.86225 0.78356
0.81715 0.79203 1.19960 1.20811 1.19938 1.22758 0.90598 0.87336
1.02154 1.74459 1.03011 1.15443 1.16725 0.88783 0.87514 0.87512
0.77380 0.90585 0.90494 0.88953 0.89761 0.76420 0.89082 0.89107
0.92102 0.88993 0.90579
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.22 11.55 59.85 0.69 0.92 16
2 N -0.15 -1.10 4.35 -16.64 -0.07 -1.17 16
3 N -0.29 -2.66 12.01 30.90 0.37 -2.29 16
4 C 0.04 0.36 12.04 -16.84 -0.20 0.16 16
5 C -0.04 -0.44 7.03 -82.68 -0.58 -1.02 16
6 C 0.62 8.02 7.86 -12.35 -0.10 7.92 16
7 O -0.52 -8.37 17.21 5.31 0.09 -8.28 16
8 N -0.60 -6.76 3.33 -171.66 -0.57 -7.33 16
9 C 0.11 0.88 5.56 -3.06 -0.02 0.86 16
10 C -0.14 -0.95 6.58 -24.89 -0.16 -1.11 16
11 C 0.14 1.50 3.32 -65.79 -0.22 1.28 16
12 H 0.11 1.34 7.73 -51.93 -0.40 0.94 16
13 N -0.73 -8.75 5.23 -51.74 -0.27 -9.02 16
14 C 0.53 9.43 7.85 -10.99 -0.09 9.34 16
15 O -0.51 -11.24 15.61 5.56 0.09 -11.15 16
16 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16
17 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16
18 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16
19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16
20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
21 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16
22 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16
23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16
25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
26 C 0.10 1.16 6.60 -2.54 -0.02 1.14 16
27 N -0.25 -2.24 9.73 33.42 0.33 -1.91 16
28 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16
29 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16
30 H 0.11 0.06 8.14 -51.93 -0.42 -0.37 16
31 H 0.21 1.58 8.06 -52.48 -0.42 1.15 16
32 H 0.08 0.54 7.81 -51.93 -0.41 0.13 16
33 H 0.08 0.58 7.67 -51.93 -0.40 0.19 16
34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
35 H 0.08 0.45 8.00 -51.93 -0.42 0.04 16
36 H 0.40 3.51 8.52 -40.82 -0.35 3.17 16
37 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16
38 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16
39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16
40 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16
41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
LS Contribution 370.58 15.07 5.58 5.58
Total: -1.00 -38.50 370.58 -6.54 -45.04
By element:
Atomic # 1 Polarization: 4.85 SS G_CDS: -5.31 Total: -0.46 kcal
Atomic # 6 Polarization: 4.13 SS G_CDS: -0.27 Total: 3.86 kcal
Atomic # 7 Polarization: -47.61 SS G_CDS: 0.52 Total: -47.09 kcal
Atomic # 8 Polarization: -19.61 SS G_CDS: 0.18 Total: -19.43 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal
Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -38.50 -6.54 -45.04 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001688003553.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.500 kcal
(2) G-P(sol) polarization free energy of solvation -38.501 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.999 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.041 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.458 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds