Wall clock time and date at job start Tue Mar 31 2020 22:14:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 N 1.28519 * 124.44678 * 2 1
4 4 C 1.31131 * 109.06178 * 179.69020 * 3 2 1
5 5 C 1.40924 * 105.77487 * 0.43424 * 4 3 2
6 6 C 1.47799 * 127.23537 * 179.84074 * 5 4 3
7 7 O 1.21561 * 120.00305 * 359.97438 * 6 5 4
8 8 N 1.34784 * 119.99736 * 179.70875 * 6 5 4
9 9 C 1.47019 * 125.64691 * 359.69101 * 8 6 5
10 10 C 1.54337 * 107.26147 * 178.85174 * 9 8 6
11 11 C 1.55150 * 103.02027 * 338.13566 * 10 9 8
12 12 H 1.08997 * 111.00858 * 277.23433 * 11 10 9
13 13 N 1.46506 * 111.03781 * 153.39995 * 11 10 9
14 14 C 1.34775 * 120.00226 * 161.33355 * 13 11 10
15 15 O 1.21280 * 120.00069 * 359.97438 * 14 13 11
16 16 C 1.50695 * 119.99860 * 180.02562 * 14 13 11
17 17 S 1.81001 * 109.47224 * 179.97438 * 16 14 13
18 18 C 1.76200 * 99.99985 * 179.97438 * 17 16 14
19 19 H 1.07999 * 120.00129 * 359.97438 * 18 17 16
20 20 C 1.38804 * 119.99661 * 180.02562 * 18 17 16
21 21 N 1.31632 * 120.00395 * 359.97438 * 20 18 17
22 22 Si 1.86803 * 119.99729 * 180.02562 * 20 18 17
23 23 H 1.48495 * 109.47161 * 59.99595 * 22 20 18
24 24 H 1.48499 * 109.46767 * 179.97438 * 22 20 18
25 25 H 1.48503 * 109.46921 * 299.99668 * 22 20 18
26 26 C 1.47426 * 125.64612 * 179.97438 * 8 6 5
27 27 N 1.28586 * 124.44510 * 179.97438 * 2 1 3
28 28 H 1.08993 * 109.47066 * 270.02489 * 1 2 3
29 29 H 1.09006 * 109.46711 * 30.02162 * 1 2 3
30 30 H 1.08995 * 109.46834 * 150.02047 * 1 2 3
31 31 H 1.08004 * 127.11274 * 180.27056 * 4 3 2
32 32 H 1.09000 * 109.88145 * 298.39274 * 9 8 6
33 33 H 1.08997 * 109.88249 * 59.56115 * 9 8 6
34 34 H 1.09007 * 110.84502 * 219.66866 * 10 9 8
35 35 H 1.09003 * 110.67176 * 96.52401 * 10 9 8
36 36 H 0.97001 * 119.99773 * 341.33188 * 13 11 10
37 37 H 1.09001 * 109.47233 * 299.99532 * 16 14 13
38 38 H 1.08999 * 109.47559 * 59.99356 * 16 14 13
39 39 H 0.96993 * 120.00535 * 180.02562 * 21 20 18
40 40 H 1.09000 * 110.36316 * 322.92768 * 26 8 6
41 41 H 1.08994 * 110.36888 * 85.14317 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.1919 1.0598 0.0000
4 6 3.4562 0.7119 0.0067
5 6 3.4659 -0.6972 0.0008
6 6 4.6487 -1.5835 0.0014
7 8 5.7664 -1.1056 0.0071
8 7 4.4880 -2.9217 0.0011
9 6 3.1997 -3.6300 0.0066
10 6 3.5081 -5.1419 -0.0256
11 6 4.9443 -5.1933 -0.6103
12 1 4.9254 -5.1364 -1.6986
13 7 5.6518 -6.3955 -0.1624
14 6 6.7407 -6.8248 -0.8305
15 8 7.1347 -6.2163 -1.8028
16 6 7.4680 -8.0618 -0.3701
17 16 8.8753 -8.3765 -1.4640
18 6 9.5249 -9.8333 -0.7153
19 1 9.0466 -10.2507 0.1584
20 6 10.6520 -10.4437 -1.2479
21 7 11.2353 -9.9347 -2.3125
22 14 11.3403 -11.9886 -0.4547
23 1 10.3095 -13.0573 -0.4759
24 1 12.5372 -12.4408 -1.2084
25 1 11.7210 -11.6959 0.9506
26 6 5.5750 -3.9176 0.0011
27 7 2.1923 -1.0604 0.0005
28 1 -0.3633 0.0004 1.0276
29 1 -0.3633 0.8899 -0.5142
30 1 -0.3633 -0.8901 -0.5135
31 1 4.3130 1.3695 0.0126
32 1 2.6443 -3.3822 0.9111
33 1 2.6205 -3.3528 -0.8742
34 1 2.8080 -5.6669 -0.6757
35 1 3.4860 -5.5607 0.9805
36 1 5.3365 -6.8825 0.6150
37 1 7.8254 -7.9149 0.6491
38 1 6.7890 -8.9140 -0.3978
39 1 12.0227 -10.3615 -2.6849
40 1 6.4056 -3.5725 -0.6147
41 1 5.9130 -4.1103 1.0192
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001688003553.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:31
Heat of formation + Delta-G solvation = 22.763714 kcal
Electronic energy + Delta-G solvation = -25773.934134 eV
Core-core repulsion = 21817.223984 eV
Total energy + Delta-G solvation = -3956.710149 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 339.115 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-44.74172 -41.37592 -40.39440 -38.53556 -35.46493 -34.78712 -34.56562 -33.83711
-32.19030 -30.73874 -29.63669 -28.59606 -27.63375 -25.79385 -23.93347 -23.04745
-22.41190 -21.73611 -20.78681 -19.84285 -18.59457 -18.21470 -18.15221 -17.95186
-17.41578 -16.86442 -16.84019 -16.43208 -16.39850 -15.77488 -15.71519 -15.32838
-14.76659 -14.52072 -14.46099 -14.08755 -14.04302 -13.78612 -13.62073 -13.48335
-13.15342 -13.13092 -12.86822 -12.85245 -12.62923 -12.54320 -12.05516 -11.89582
-11.72558 -11.55357 -11.51250 -11.11247 -10.98361 -10.53459 -10.27740 -10.25020
-9.80746 -8.64918 -8.32794 -6.10882 0.13470 0.81836 1.17204 1.27808
1.45159 1.46525 1.54857 1.58559 1.74913 2.02988 2.28085 2.32478
2.77042 3.01306 3.29332 3.35438 3.52016 3.70327 3.92066 3.97963
3.98980 4.17272 4.26797 4.29953 4.33634 4.34749 4.45853 4.54430
4.58868 4.67839 4.75631 4.78096 4.84577 4.95727 5.09680 5.12150
5.43346 5.45039 5.51529 6.21276 6.22233 6.49814 6.78794 7.02725
7.08393 7.24043 8.76074
Molecular weight = 339.12amu
Principal moments of inertia in cm(-1)
A = 0.036527 B = 0.001812 C = 0.001762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 766.374075 B =15450.534453 C =15886.713163
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.087 3.913
2 N -0.132 5.132
3 N -0.298 5.298
4 C 0.029 3.971
5 C -0.065 4.065
6 C 0.617 3.383
7 O -0.567 6.567
8 N -0.603 5.603
9 C 0.111 3.889
10 C -0.120 4.120
11 C 0.138 3.862
12 H 0.084 0.916
13 N -0.699 5.699
14 C 0.536 3.464
15 O -0.563 6.563
16 C -0.129 4.129
17 S -0.156 6.156
18 C -0.546 4.546
19 H 0.085 0.915
20 C 0.012 3.988
21 N -0.912 5.912
22 Si 0.998 3.002
23 H -0.261 1.261
24 H -0.281 1.281
25 H -0.262 1.262
26 C 0.096 3.904
27 N -0.238 5.238
28 H 0.115 0.885
29 H 0.122 0.878
30 H 0.127 0.873
31 H 0.218 0.782
32 H 0.093 0.907
33 H 0.082 0.918
34 H 0.116 0.884
35 H 0.111 0.889
36 H 0.423 0.577
37 H 0.112 0.888
38 H 0.115 0.885
39 H 0.270 0.730
40 H 0.050 0.950
41 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.875 15.750 10.248 35.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 N -0.037 5.037
3 N -0.139 5.139
4 C -0.154 4.154
5 C -0.225 4.225
6 C 0.404 3.596
7 O -0.445 6.445
8 N -0.336 5.336
9 C -0.011 4.011
10 C -0.158 4.158
11 C 0.031 3.969
12 H 0.102 0.898
13 N -0.353 5.353
14 C 0.322 3.678
15 O -0.440 6.440
16 C -0.280 4.280
17 S 0.071 5.929
18 C -0.693 4.693
19 H 0.103 0.897
20 C -0.193 4.193
21 N -0.549 5.549
22 Si 0.820 3.180
23 H -0.185 1.185
24 H -0.206 1.206
25 H -0.187 1.187
26 C -0.028 4.028
27 N -0.089 5.089
28 H 0.133 0.867
29 H 0.141 0.859
30 H 0.145 0.855
31 H 0.234 0.766
32 H 0.111 0.889
33 H 0.100 0.900
34 H 0.135 0.865
35 H 0.130 0.870
36 H 0.262 0.738
37 H 0.130 0.870
38 H 0.134 0.866
39 H 0.079 0.921
40 H 0.069 0.931
41 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -29.890 17.070 8.517 35.459
hybrid contribution 1.428 -1.406 1.392 2.440
sum -28.462 15.664 9.909 33.965
Atomic orbital electron populations
1.22844 0.66570 1.08237 1.07374 1.48718 1.10784 0.98580 1.45625
1.74054 1.03647 1.16039 1.20149 1.25099 0.95063 0.93497 1.01736
1.22638 0.91170 0.94758 1.13980 1.16526 0.86198 0.80547 0.76356
1.90828 1.25704 1.75321 1.52629 1.48189 1.09989 1.03984 1.71409
1.22278 0.83871 0.90859 1.04078 1.22995 0.93336 0.95007 1.04431
1.21949 0.92695 0.82689 0.99566 0.89789 1.45536 1.28450 1.28143
1.33206 1.20147 0.80379 0.84904 0.82385 1.90723 1.66534 1.58330
1.28424 1.23368 1.01108 0.98901 1.04609 1.85653 1.30659 1.35855
1.40711 1.23182 1.16432 1.12478 1.17245 0.89694 1.26141 0.96021
1.01716 0.95378 1.70182 1.20757 1.41407 1.22511 0.85004 0.77650
0.77021 0.78321 1.18502 1.20591 1.18700 1.22622 0.90196 0.88269
1.01731 1.74397 1.02275 1.15849 1.16340 0.86691 0.85920 0.85454
0.76552 0.88882 0.89951 0.86545 0.87042 0.73845 0.87016 0.86647
0.92062 0.93087 0.89885
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.10 11.55 127.77 1.48 1.57 16
2 N -0.13 -1.71 4.35 -206.55 -0.90 -2.60 16
3 N -0.30 -5.08 12.01 -56.16 -0.67 -5.75 16
4 C 0.03 0.55 12.04 85.46 1.03 1.58 16
5 C -0.06 -1.39 7.03 42.24 0.30 -1.09 16
6 C 0.62 16.42 7.86 86.77 0.68 17.10 16
7 O -0.57 -19.56 17.21 -3.91 -0.07 -19.62 16
8 N -0.60 -13.33 3.33 -815.26 -2.71 -16.04 16
9 C 0.11 1.44 5.56 86.73 0.48 1.92 16
10 C -0.12 -1.17 6.58 31.79 0.21 -0.96 16
11 C 0.14 2.81 3.32 46.37 0.15 2.96 16
12 H 0.08 2.15 7.73 -2.39 -0.02 2.13 16
13 N -0.70 -15.35 5.23 -436.01 -2.28 -17.63 16
14 C 0.54 18.74 7.85 87.66 0.69 19.43 16
15 O -0.56 -25.68 15.61 -3.03 -0.05 -25.73 16
16 C -0.13 -4.86 6.16 71.23 0.44 -4.42 16
17 S -0.16 -8.60 20.57 -56.49 -1.16 -9.76 16
18 C -0.55 -30.88 9.50 67.96 0.65 -30.24 16
19 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16
20 C 0.01 0.69 5.49 84.86 0.47 1.15 16
21 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16
22 Si 1.00 43.41 29.55 68.60 2.03 45.44 16
23 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16
24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16
25 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16
26 C 0.10 2.38 6.60 86.85 0.57 2.95 16
27 N -0.24 -3.86 9.73 -48.17 -0.47 -4.33 16
28 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16
29 H 0.12 -0.21 8.14 -2.38 -0.02 -0.22 16
30 H 0.13 -0.34 8.14 -2.39 -0.02 -0.36 16
31 H 0.22 3.47 8.06 -2.91 -0.02 3.44 16
32 H 0.09 0.97 7.81 -2.39 -0.02 0.95 16
33 H 0.08 1.03 7.67 -2.39 -0.02 1.01 16
34 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16
35 H 0.11 0.59 8.00 -2.39 -0.02 0.57 16
36 H 0.42 5.77 8.52 -92.71 -0.79 4.98 16
37 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16
38 H 0.12 3.81 8.14 -2.40 -0.02 3.79 16
39 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16
40 H 0.05 1.68 8.04 -2.39 -0.02 1.66 16
41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16
Total: -1.00 -89.68 370.58 1.43 -88.25
By element:
Atomic # 1 Polarization: 11.55 SS G_CDS: 0.28 Total: 11.83 kcal
Atomic # 6 Polarization: 4.82 SS G_CDS: 7.14 Total: 11.96 kcal
Atomic # 7 Polarization: -95.62 SS G_CDS: -6.75 Total: -102.36 kcal
Atomic # 8 Polarization: -45.24 SS G_CDS: -0.11 Total: -45.36 kcal
Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal
Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal
Total: -89.68 1.43 -88.25 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001688003553.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.011 kcal
(2) G-P(sol) polarization free energy of solvation -89.677 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.334 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.247 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.764 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds