Wall clock time and date at job start Tue Mar 31 2020 22:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34776 * 120.00084 * 2 1 4 4 O 1.21283 * 120.00496 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99942 * 359.97438 * 3 2 1 6 6 S 1.81004 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.76206 * 99.99903 * 179.97438 * 6 5 3 8 8 H 1.07995 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.38800 * 119.99616 * 179.97438 * 7 6 5 10 10 N 1.31630 * 120.00369 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99826 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47278 * 60.00108 * 11 9 7 13 13 H 1.48500 * 109.47176 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46914 * 300.00049 * 11 9 7 15 15 C 1.46500 * 120.00431 * 179.97438 * 2 1 3 16 16 C 1.53495 * 114.20485 * 300.00615 * 15 2 1 17 17 N 1.47069 * 87.98587 * 87.71438 * 16 15 2 18 18 C 1.34784 * 136.05474 * 207.08488 * 17 16 15 19 19 O 1.21552 * 120.00134 * 359.72482 * 18 17 16 20 20 C 1.47871 * 119.99878 * 179.97438 * 18 17 16 21 21 N 1.34550 * 126.04621 * 359.69568 * 20 18 17 22 22 C 1.30871 * 107.26782 * 179.86495 * 21 20 18 23 23 N 1.34590 * 107.62370 * 0.39226 * 22 21 20 24 24 C 1.46498 * 125.74735 * 179.73403 * 23 22 21 25 25 N 1.28848 * 108.50114 * 359.74396 * 23 22 21 26 26 C 1.47068 * 87.88651 * 27.34115 * 17 16 15 27 27 H 1.08998 * 109.47595 * 270.00298 * 1 2 3 28 28 H 1.09008 * 109.47122 * 30.00158 * 1 2 3 29 29 H 1.09003 * 109.46941 * 149.99864 * 1 2 3 30 30 H 1.09001 * 109.47074 * 300.00105 * 5 3 2 31 31 H 1.09004 * 109.47209 * 60.00225 * 5 3 2 32 32 H 0.96996 * 120.00045 * 180.02562 * 10 9 7 33 33 H 1.08995 * 113.28775 * 166.93455 * 15 2 1 34 34 H 1.08994 * 113.47293 * 332.93274 * 16 15 2 35 35 H 1.09000 * 113.46642 * 202.48740 * 16 15 2 36 36 H 1.08002 * 126.18924 * 180.13910 * 22 21 20 37 37 H 1.09005 * 109.46656 * 269.99467 * 24 23 22 38 38 H 1.08999 * 109.47460 * 29.99225 * 24 23 22 39 39 H 1.08997 * 109.47162 * 149.99443 * 24 23 22 40 40 H 1.08999 * 113.46642 * 87.43975 * 26 17 16 41 41 H 1.09001 * 113.46436 * 217.87945 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5615 3.8481 0.0003 7 6 1.4414 5.2082 -0.0013 8 1 0.3761 5.0305 -0.0020 9 6 1.9281 6.5081 -0.0006 10 7 3.2265 6.7247 0.0008 11 14 0.7407 7.9501 -0.0016 12 1 -0.1157 7.8870 1.2100 13 1 1.5068 9.2222 -0.0013 14 1 -0.1131 7.8873 -1.2151 15 6 2.1975 -1.2687 0.0006 16 6 1.9059 -2.1632 1.2133 17 7 0.7773 -2.7291 0.4591 18 6 -0.4052 -3.2995 0.7643 19 8 -0.7302 -3.4398 1.9271 20 6 -1.3046 -3.7596 -0.3155 21 7 -1.0687 -3.6646 -1.6367 22 6 -2.0989 -4.1850 -2.2537 23 7 -2.9730 -4.5926 -1.3149 24 6 -4.2679 -5.2284 -1.5695 25 7 -2.4789 -4.3290 -0.1544 26 6 1.5095 -2.4046 -0.7743 27 1 -0.3634 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 0.7590 2.5298 -0.8908 31 1 0.7583 2.5303 0.8892 32 1 3.5666 7.6331 0.0016 33 1 3.2575 -1.1543 -0.2258 34 1 1.6005 -1.6071 2.0996 35 1 2.6956 -2.8856 1.4197 36 1 -2.2267 -4.2683 -3.3229 37 1 -5.0391 -4.4624 -1.6506 38 1 -4.2183 -5.7939 -2.5001 39 1 -4.5099 -5.9020 -0.7475 40 1 2.1947 -3.1906 -1.0919 41 1 0.8662 -2.0540 -1.5815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722125308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:00 Heat of formation + Delta-G solvation = 89.562067 kcal Electronic energy + Delta-G solvation = -26477.618377 eV Core-core repulsion = 22523.804821 eV Total energy + Delta-G solvation = -3953.813555 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.84553 -41.01252 -39.01601 -37.76464 -35.03798 -34.46134 -32.41533 -32.17419 -30.61614 -28.98200 -27.92988 -26.73817 -26.15647 -25.47956 -24.19919 -22.73151 -21.80327 -20.11281 -18.78738 -18.08994 -17.64814 -17.27037 -16.93065 -16.88655 -16.46510 -15.70329 -15.48466 -15.36404 -15.03984 -14.79045 -14.21291 -13.90344 -13.79578 -13.51054 -13.41990 -13.30636 -13.05143 -12.55258 -12.50526 -12.36716 -12.15176 -12.02576 -11.92284 -11.19249 -11.03284 -11.02603 -10.85325 -10.80342 -10.75998 -10.35957 -9.99412 -9.81021 -9.46577 -9.04561 -8.95524 -8.56939 -8.22485 -6.48845 -6.20232 -3.90792 1.01606 1.68394 1.70688 2.47609 2.82365 2.96794 3.09251 3.24664 3.26129 3.30012 3.58075 3.60393 3.84904 4.13736 4.21469 4.23788 4.41328 4.51543 4.66950 4.72017 4.93113 5.11039 5.12849 5.14839 5.20579 5.32869 5.39096 5.46461 5.56411 5.58369 5.66471 5.76803 5.81764 5.87136 5.91528 6.04180 6.15331 6.59666 7.32474 7.49548 7.50855 7.60877 7.90146 8.36457 8.50373 9.25001 10.87119 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.002358 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.152341 B =11870.168251 C =12828.551294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.602 5.602 3 C 0.539 3.461 4 O -0.512 6.512 5 C -0.150 4.150 6 S -0.059 6.059 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.110 3.890 16 C 0.096 3.904 17 N -0.629 5.629 18 C 0.643 3.357 19 O -0.518 6.518 20 C 0.148 3.852 21 N -0.480 5.480 22 C 0.191 3.809 23 N -0.305 5.305 24 C 0.085 3.915 25 N -0.253 5.253 26 C 0.098 3.902 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.269 0.731 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.227 0.773 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.150 -26.622 -7.269 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C 0.327 3.673 4 O -0.386 6.386 5 C -0.300 4.300 6 S 0.167 5.833 7 C -0.683 4.683 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.200 1.200 15 C 0.004 3.996 16 C -0.028 4.028 17 N -0.365 5.365 18 C 0.428 3.572 19 O -0.390 6.390 20 C -0.132 4.132 21 N -0.205 5.205 22 C -0.104 4.104 23 N -0.100 5.100 24 C -0.056 4.056 25 N -0.092 5.092 26 C -0.025 4.025 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.243 0.757 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.600 -26.618 -6.079 29.665 hybrid contribution -2.680 0.618 -0.405 2.780 sum -14.280 -26.000 -6.484 30.364 Atomic orbital electron populations 1.21780 0.79486 1.03021 1.01884 1.47462 1.06657 1.04357 1.75193 1.20362 0.87900 0.84290 0.74707 1.90695 1.13609 1.86707 1.47575 1.23562 1.04602 0.96993 1.04865 1.85366 1.07943 0.93253 1.96717 1.22816 0.94282 0.92211 1.59039 0.91006 1.24984 0.95671 0.98349 0.94543 1.70004 1.11723 1.21757 1.46787 0.86231 0.80201 0.80314 0.78794 1.19945 1.20811 1.19964 1.22233 0.98520 0.83267 0.95593 1.23626 0.86501 0.94691 0.97962 1.49271 1.15620 1.59325 1.12255 1.15619 0.79314 0.76918 0.85342 1.90856 1.74026 1.55330 1.18830 1.23572 0.93390 1.04840 0.91350 1.71335 1.24859 1.20487 1.03859 1.26559 0.86618 0.98373 0.98884 1.47410 1.17401 1.41822 1.03409 1.22278 0.79607 0.99105 1.04580 1.74356 1.10972 1.16786 1.07098 1.23575 0.93870 0.95421 0.89661 0.92897 0.90607 0.91283 0.89144 0.89178 0.92132 0.84811 0.89531 0.88152 0.75660 0.88951 0.87868 0.88135 0.88171 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 9.35 59.84 0.56 1.59 16 2 N -0.60 -8.56 3.12 -173.56 -0.54 -9.10 16 3 C 0.54 10.05 7.69 -10.99 -0.08 9.97 16 4 O -0.51 -11.20 15.37 5.56 0.09 -11.11 16 5 C -0.15 -3.05 4.71 36.01 0.17 -2.88 16 6 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 11 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.11 1.25 4.67 -67.67 -0.32 0.94 16 16 C 0.10 1.02 8.24 -8.50 -0.07 0.95 16 17 N -0.63 -7.30 2.41 -186.16 -0.45 -7.75 16 18 C 0.64 9.02 7.67 -12.31 -0.09 8.93 16 19 O -0.52 -9.02 17.86 5.32 0.10 -8.93 16 20 C 0.15 1.83 7.93 -156.36 -1.24 0.60 16 21 N -0.48 -4.73 9.88 -12.36 -0.12 -4.86 16 22 C 0.19 1.17 12.62 -90.48 -1.14 0.03 16 23 N -0.31 -2.09 3.72 -69.39 -0.26 -2.35 16 24 C 0.09 0.13 11.38 59.85 0.68 0.81 16 25 N -0.25 -2.94 12.08 32.07 0.39 -2.56 16 26 C 0.10 0.92 6.82 -8.36 -0.06 0.87 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.92 6.44 -51.92 -0.33 0.59 16 29 H 0.07 0.82 5.39 -51.93 -0.28 0.54 16 30 H 0.09 1.71 7.40 -51.92 -0.38 1.32 16 31 H 0.09 1.75 8.11 -51.91 -0.42 1.33 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.13 1.53 7.29 -51.93 -0.38 1.15 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.23 0.21 8.06 -52.49 -0.42 -0.21 16 37 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 39 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.96 6.58 -51.93 -0.34 0.62 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -40.21 367.56 -8.23 -48.44 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -5.07 Total: -3.38 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -1.40 Total: 8.83 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.25 Total: -52.02 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -40.21 -8.23 -48.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722125308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.003 kcal (2) G-P(sol) polarization free energy of solvation -40.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds