Wall clock time and date at job start Tue Mar 31 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34776 * 120.00084 * 2 1 4 4 O 1.21283 * 120.00496 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99942 * 359.97438 * 3 2 1 6 6 S 1.81004 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.76206 * 99.99903 * 179.97438 * 6 5 3 8 8 H 1.07995 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.38800 * 119.99616 * 179.97438 * 7 6 5 10 10 N 1.31630 * 120.00369 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99826 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47278 * 60.00108 * 11 9 7 13 13 H 1.48500 * 109.47176 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46914 * 300.00049 * 11 9 7 15 15 C 1.46500 * 120.00431 * 179.97438 * 2 1 3 16 16 C 1.53495 * 114.20485 * 300.00615 * 15 2 1 17 17 N 1.47069 * 87.98587 * 87.71438 * 16 15 2 18 18 C 1.34784 * 136.05474 * 207.08488 * 17 16 15 19 19 O 1.21552 * 120.00134 * 359.72482 * 18 17 16 20 20 C 1.47871 * 119.99878 * 179.97438 * 18 17 16 21 21 N 1.34550 * 126.04621 * 359.69568 * 20 18 17 22 22 C 1.30871 * 107.26782 * 179.86495 * 21 20 18 23 23 N 1.34590 * 107.62370 * 0.39226 * 22 21 20 24 24 C 1.46498 * 125.74735 * 179.73403 * 23 22 21 25 25 N 1.28848 * 108.50114 * 359.74396 * 23 22 21 26 26 C 1.47068 * 87.88651 * 27.34115 * 17 16 15 27 27 H 1.08998 * 109.47595 * 270.00298 * 1 2 3 28 28 H 1.09008 * 109.47122 * 30.00158 * 1 2 3 29 29 H 1.09003 * 109.46941 * 149.99864 * 1 2 3 30 30 H 1.09001 * 109.47074 * 300.00105 * 5 3 2 31 31 H 1.09004 * 109.47209 * 60.00225 * 5 3 2 32 32 H 0.96996 * 120.00045 * 180.02562 * 10 9 7 33 33 H 1.08995 * 113.28775 * 166.93455 * 15 2 1 34 34 H 1.08994 * 113.47293 * 332.93274 * 16 15 2 35 35 H 1.09000 * 113.46642 * 202.48740 * 16 15 2 36 36 H 1.08002 * 126.18924 * 180.13910 * 22 21 20 37 37 H 1.09005 * 109.46656 * 269.99467 * 24 23 22 38 38 H 1.08999 * 109.47460 * 29.99225 * 24 23 22 39 39 H 1.08997 * 109.47162 * 149.99443 * 24 23 22 40 40 H 1.08999 * 113.46642 * 87.43975 * 26 17 16 41 41 H 1.09001 * 113.46436 * 217.87945 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5615 3.8481 0.0003 7 6 1.4414 5.2082 -0.0013 8 1 0.3761 5.0305 -0.0020 9 6 1.9281 6.5081 -0.0006 10 7 3.2265 6.7247 0.0008 11 14 0.7407 7.9501 -0.0016 12 1 -0.1157 7.8870 1.2100 13 1 1.5068 9.2222 -0.0013 14 1 -0.1131 7.8873 -1.2151 15 6 2.1975 -1.2687 0.0006 16 6 1.9059 -2.1632 1.2133 17 7 0.7773 -2.7291 0.4591 18 6 -0.4052 -3.2995 0.7643 19 8 -0.7302 -3.4398 1.9271 20 6 -1.3046 -3.7596 -0.3155 21 7 -1.0687 -3.6646 -1.6367 22 6 -2.0989 -4.1850 -2.2537 23 7 -2.9730 -4.5926 -1.3149 24 6 -4.2679 -5.2284 -1.5695 25 7 -2.4789 -4.3290 -0.1544 26 6 1.5095 -2.4046 -0.7743 27 1 -0.3634 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 0.7590 2.5298 -0.8908 31 1 0.7583 2.5303 0.8892 32 1 3.5666 7.6331 0.0016 33 1 3.2575 -1.1543 -0.2258 34 1 1.6005 -1.6071 2.0996 35 1 2.6956 -2.8856 1.4197 36 1 -2.2267 -4.2683 -3.3229 37 1 -5.0391 -4.4624 -1.6506 38 1 -4.2183 -5.7939 -2.5001 39 1 -4.5099 -5.9020 -0.7475 40 1 2.1947 -3.1906 -1.0919 41 1 0.8662 -2.0540 -1.5815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722125308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:59 Heat of formation + Delta-G solvation = 61.360548 kcal Electronic energy + Delta-G solvation = -26478.841286 eV Core-core repulsion = 22523.804821 eV Total energy + Delta-G solvation = -3955.036465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.44992 -42.04550 -40.31418 -38.92451 -35.79210 -35.50727 -34.57721 -32.79492 -31.73198 -30.29741 -28.52676 -27.83320 -27.63027 -26.98655 -24.98581 -23.41012 -22.71403 -21.11848 -20.00338 -19.53292 -18.82924 -18.28416 -17.78551 -17.71330 -17.20971 -16.93468 -16.86212 -16.79502 -16.54362 -15.80295 -15.67166 -14.81330 -14.74050 -14.58748 -14.44307 -14.26194 -13.96177 -13.88272 -13.61636 -13.46897 -13.16513 -13.11944 -12.98878 -12.87360 -12.86359 -12.62182 -12.13386 -11.74697 -11.55496 -11.44233 -11.34442 -11.12410 -10.99344 -10.61951 -10.27733 -9.91654 -9.76948 -8.65788 -8.33847 -6.11670 0.25920 1.10105 1.16605 1.23241 1.43859 1.44024 1.49631 1.54488 1.79019 1.98687 2.20044 2.27786 2.88245 3.00015 3.22899 3.29416 3.39294 3.65677 3.76398 3.85428 4.07486 4.22121 4.24765 4.28785 4.37329 4.41344 4.43896 4.48587 4.59232 4.60234 4.69366 4.70640 4.77745 4.82644 4.90984 5.30786 5.42215 5.47664 5.65572 6.14853 6.20484 6.41873 6.72659 7.06548 7.07441 7.07612 8.75007 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.002358 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.152341 B =11870.168251 C =12828.551294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.589 5.589 3 C 0.542 3.458 4 O -0.551 6.551 5 C -0.127 4.127 6 S -0.142 6.142 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.015 3.985 10 N -0.909 5.909 11 Si 0.997 3.003 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.261 1.261 15 C 0.101 3.899 16 C 0.097 3.903 17 N -0.628 5.628 18 C 0.638 3.362 19 O -0.568 6.568 20 C 0.122 3.878 21 N -0.500 5.500 22 C 0.206 3.794 23 N -0.299 5.299 24 C 0.074 3.926 25 N -0.288 5.288 26 C 0.115 3.885 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.272 0.728 33 H 0.137 0.863 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.279 0.721 37 H 0.105 0.895 38 H 0.144 0.856 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.405 -27.902 -9.406 33.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.322 5.322 3 C 0.330 3.670 4 O -0.428 6.428 5 C -0.278 4.278 6 S 0.085 5.915 7 C -0.696 4.696 8 H 0.099 0.901 9 C -0.190 4.190 10 N -0.546 5.546 11 Si 0.818 3.182 12 H -0.189 1.189 13 H -0.203 1.203 14 H -0.186 1.186 15 C -0.004 4.004 16 C -0.026 4.026 17 N -0.362 5.362 18 C 0.425 3.575 19 O -0.445 6.445 20 C -0.156 4.156 21 N -0.226 5.226 22 C -0.088 4.088 23 N -0.095 5.095 24 C -0.064 4.064 25 N -0.130 5.130 26 C -0.007 4.007 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.294 0.706 37 H 0.123 0.877 38 H 0.162 0.838 39 H 0.114 0.886 40 H 0.151 0.849 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.885 -27.946 -8.251 32.278 hybrid contribution -2.078 0.834 0.189 2.247 sum -15.963 -27.112 -8.062 32.479 Atomic orbital electron populations 1.21854 0.78233 1.03958 1.01891 1.47362 1.07361 1.04189 1.73322 1.20009 0.87264 0.84876 0.74860 1.90682 1.15010 1.87232 1.49855 1.23391 1.02938 0.95225 1.06221 1.85486 1.12124 0.96842 1.97013 1.23155 0.94614 0.92770 1.59043 0.90142 1.26098 0.97591 1.01591 0.93744 1.70164 1.14001 1.22552 1.47844 0.85031 0.77667 0.76036 0.79431 1.18926 1.20274 1.18587 1.22450 0.98619 0.82338 0.97010 1.23737 0.87053 0.95033 0.96800 1.49346 1.15245 1.58293 1.13345 1.15943 0.79813 0.76518 0.85274 1.90810 1.75201 1.57626 1.20841 1.23254 0.93803 1.06638 0.91934 1.71267 1.26750 1.21878 1.02706 1.27529 0.84983 0.95790 1.00503 1.47802 1.18550 1.40860 1.02241 1.22757 0.77711 0.99612 1.06358 1.74268 1.11287 1.17568 1.09848 1.23646 0.93567 0.94953 0.88531 0.93346 0.89893 0.90101 0.87279 0.88109 0.91946 0.84497 0.91439 0.85107 0.70562 0.87667 0.83752 0.88613 0.84940 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 9.35 127.77 1.19 3.20 16 2 N -0.59 -16.28 3.12 -821.40 -2.56 -18.84 16 3 C 0.54 20.19 7.69 87.66 0.67 20.86 16 4 O -0.55 -24.51 15.37 -3.04 -0.05 -24.55 16 5 C -0.13 -5.15 4.71 71.24 0.34 -4.82 16 6 S -0.14 -7.88 20.57 -56.49 -1.16 -9.04 16 7 C -0.55 -31.45 9.50 67.95 0.65 -30.80 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 9 C 0.01 0.84 5.49 84.86 0.47 1.31 16 10 N -0.91 -55.81 13.22 21.65 0.29 -55.52 16 11 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 13 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 15 C 0.10 2.18 4.67 45.55 0.21 2.39 16 16 C 0.10 1.99 8.24 83.18 0.69 2.68 16 17 N -0.63 -14.02 2.41 -861.15 -2.08 -16.10 16 18 C 0.64 18.00 7.67 86.79 0.67 18.67 16 19 O -0.57 -20.59 17.86 -3.88 -0.07 -20.66 16 20 C 0.12 2.95 7.93 137.13 1.09 4.03 16 21 N -0.50 -8.74 9.88 -193.03 -1.91 -10.65 16 22 C 0.21 1.81 12.62 180.30 2.27 4.08 16 23 N -0.30 -3.38 3.72 -373.46 -1.39 -4.77 16 24 C 0.07 0.00 11.38 127.77 1.45 1.45 16 25 N -0.29 -6.53 12.08 -52.44 -0.63 -7.16 16 26 C 0.12 1.92 6.82 83.27 0.57 2.49 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.88 6.44 -2.38 -0.02 1.87 16 29 H 0.08 1.80 5.39 -2.39 -0.01 1.79 16 30 H 0.11 4.01 7.40 -2.39 -0.02 3.99 16 31 H 0.10 3.87 8.11 -2.39 -0.02 3.85 16 32 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.14 2.98 7.29 -2.39 -0.02 2.96 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.28 -1.00 8.06 -2.91 -0.02 -1.02 16 37 H 0.10 -0.22 8.14 -2.38 -0.02 -0.24 16 38 H 0.14 -1.19 8.14 -2.39 -0.02 -1.21 16 39 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 1.69 6.58 -2.39 -0.02 1.68 16 Total: -1.00 -92.48 367.56 3.80 -88.68 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.07 Total: 7.29 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 10.26 Total: 25.53 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -8.28 Total: -113.05 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.12 Total: -45.21 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -92.48 3.80 -88.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722125308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.036 kcal (2) G-P(sol) polarization free energy of solvation -92.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds