Wall clock time and date at job start Tue Mar 31 2020 22:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00186 * 2 1 4 4 H 1.48507 * 109.47260 * 270.00203 * 3 2 1 5 5 H 1.48502 * 109.47098 * 30.00103 * 3 2 1 6 6 H 1.48505 * 109.47311 * 149.99885 * 3 2 1 7 7 C 1.38956 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99874 * 0.02562 * 7 2 1 9 9 N 1.37094 * 119.99623 * 179.97438 * 7 2 1 10 10 C 1.34786 * 119.99626 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99698 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99840 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46931 * 179.97438 * 12 10 9 14 14 C 1.46906 * 111.00039 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47108 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.51374 * 305.00405 * 15 14 13 17 17 C 1.53296 * 109.51012 * 184.89820 * 15 14 13 18 18 N 1.47158 * 108.38079 * 187.72312 * 17 15 14 19 19 C 1.34770 * 120.98244 * 230.51158 * 18 17 15 20 20 O 1.21507 * 120.00122 * 173.83113 * 19 18 17 21 21 C 1.48277 * 120.00345 * 353.84046 * 19 18 17 22 22 C 1.47484 * 128.71658 * 173.47968 * 21 19 18 23 23 N 1.30643 * 102.72095 * 179.97438 * 22 21 19 24 24 O 1.20841 * 109.61586 * 0.02562 * 23 22 21 25 25 N 1.20901 * 115.91232 * 359.72601 * 24 23 22 26 26 C 1.47155 * 118.03302 * 50.54091 * 18 17 15 27 27 C 1.53296 * 108.38681 * 309.46055 * 26 18 17 28 28 O 1.42963 * 109.22140 * 52.30135 * 27 26 18 29 29 H 0.97007 * 119.99822 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00870 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47336 * 59.99914 * 12 10 9 32 32 H 1.08997 * 109.47418 * 299.99741 * 12 10 9 33 33 H 1.00897 * 111.00430 * 303.95488 * 13 12 10 34 34 H 1.09006 * 109.46780 * 60.00455 * 14 13 12 35 35 H 1.08992 * 109.47272 * 300.00029 * 14 13 12 36 36 H 1.08991 * 109.68257 * 307.44890 * 17 15 14 37 37 H 1.09003 * 109.67543 * 68.00642 * 17 15 14 38 38 H 1.07998 * 128.63736 * 359.97438 * 22 21 19 39 39 H 1.09001 * 109.67992 * 69.18203 * 26 18 17 40 40 H 1.09003 * 109.67721 * 189.70010 * 26 18 17 41 41 H 1.08997 * 109.51244 * 172.22909 * 27 26 18 42 42 H 1.08999 * 109.50977 * 292.33339 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0021 11 8 3.4472 -3.4210 -0.0021 12 6 5.5606 -2.3706 -0.0021 13 7 6.0503 -3.7556 -0.0027 14 6 7.5188 -3.7948 -0.0034 15 6 7.9901 -5.2504 -0.0034 16 1 7.5420 -5.7782 0.8384 17 6 9.5175 -5.2940 0.1194 18 7 9.9587 -6.6851 -0.0697 19 6 10.7905 -7.2750 0.8115 20 8 11.0547 -8.4558 0.7009 21 6 11.3830 -6.4831 1.9163 22 6 12.2007 -6.9509 3.0511 23 7 12.4470 -5.8458 3.7029 24 8 11.9246 -4.9153 3.1360 25 7 11.3152 -5.1858 2.1274 26 6 9.4655 -7.4128 -1.2498 27 6 7.9406 -7.2659 -1.3059 28 8 7.5979 -5.8803 -1.2254 29 1 -0.4850 0.8401 -0.0004 30 1 3.8648 -0.3634 -0.0007 31 1 5.9240 -1.8575 0.8883 32 1 5.9240 -1.8560 -0.8916 33 1 5.6748 -4.2722 0.7783 34 1 7.8961 -3.2911 0.8867 35 1 7.8953 -3.2906 -0.8933 36 1 9.9655 -4.6596 -0.6453 37 1 9.8164 -4.9452 1.1079 38 1 12.5171 -7.9566 3.2849 39 1 9.9083 -6.9916 -2.1524 40 1 9.7306 -8.4669 -1.1683 41 1 7.5693 -7.6789 -2.2438 42 1 7.4922 -7.8018 -0.4693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724818103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:05 Heat of formation + Delta-G solvation = 8.115271 kcal Electronic energy + Delta-G solvation = -28864.260072 eV Core-core repulsion = 24464.161848 eV Total energy + Delta-G solvation = -4400.098225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.03575 -41.62754 -40.30539 -39.64945 -36.87244 -36.42154 -35.88696 -35.67431 -35.43327 -33.74920 -32.94704 -30.17926 -28.75382 -27.10526 -26.65464 -25.20730 -24.91025 -23.80544 -22.46791 -21.28694 -21.14598 -20.25909 -20.16531 -19.30441 -18.80367 -17.98060 -17.76469 -17.49323 -16.93813 -16.72083 -16.46449 -16.22188 -16.03091 -15.83568 -15.40481 -15.33908 -14.94121 -14.80015 -14.53350 -14.44533 -14.12558 -13.96641 -13.66546 -13.31593 -13.18396 -12.95926 -12.72320 -12.66099 -12.39862 -12.36630 -12.28070 -11.96342 -11.93005 -11.89666 -11.50134 -11.46795 -11.18714 -10.43467 -10.23699 -9.84443 -9.27932 -8.40112 -6.01164 -0.48823 0.26144 1.21065 1.31627 1.37737 1.46400 1.59667 1.97620 2.12811 2.24723 2.37745 2.64065 2.70749 2.75811 3.16292 3.26791 3.36551 3.65527 3.72216 3.84119 3.88741 4.01691 4.13903 4.19944 4.29329 4.38274 4.41035 4.47854 4.55388 4.59449 4.66418 4.68671 4.78315 4.94206 5.07638 5.53562 5.82097 5.90636 6.03103 6.16932 6.39327 6.52035 6.61196 6.89534 7.28496 7.41264 7.98505 8.77626 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.002142 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.447002 B =13070.091048 C =14218.097887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.329 4.329 8 H 0.053 0.947 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.616 6.616 12 C 0.064 3.936 13 N -0.684 5.684 14 C 0.071 3.929 15 C 0.085 3.915 16 H 0.053 0.947 17 C 0.071 3.929 18 N -0.597 5.597 19 C 0.608 3.392 20 O -0.538 6.538 21 C -0.053 4.053 22 C 0.053 3.947 23 N -0.359 5.359 24 O 0.341 5.659 25 N -0.318 5.318 26 C 0.081 3.919 27 C 0.045 3.955 28 O -0.376 6.376 29 H 0.279 0.721 30 H 0.391 0.609 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.341 0.659 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.255 0.745 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.478 -9.088 2.921 32.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.458 4.458 8 H 0.071 0.929 9 N -0.233 5.233 10 C 0.236 3.764 11 O -0.500 6.500 12 C -0.069 4.069 13 N -0.316 5.316 14 C -0.058 4.058 15 C 0.025 3.975 16 H 0.071 0.929 17 C -0.052 4.052 18 N -0.329 5.329 19 C 0.393 3.607 20 O -0.413 6.413 21 C -0.217 4.217 22 C -0.132 4.132 23 N -0.083 5.083 24 O 0.116 5.884 25 N -0.039 5.039 26 C -0.041 4.041 27 C -0.032 4.032 28 O -0.294 6.294 29 H 0.088 0.912 30 H 0.226 0.774 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.160 0.840 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.139 0.861 38 H 0.271 0.729 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 30.934 -9.168 2.372 32.351 hybrid contribution -0.295 -0.070 0.740 0.799 sum 30.639 -9.238 3.112 32.153 Atomic orbital electron populations 1.69812 1.08208 1.29249 1.50356 1.26159 0.96507 1.02849 0.96069 0.85338 0.79540 0.76506 0.79950 1.18187 1.20113 1.15154 1.19000 0.81597 0.94867 1.50353 0.92858 1.42027 1.05761 1.07653 1.67858 1.21053 0.91159 0.83240 0.80997 1.90549 1.71480 1.32923 1.55097 1.21633 0.89335 0.91602 1.04281 1.59907 1.07903 1.12135 1.51664 1.22003 0.86765 0.93712 1.03339 1.22462 0.92611 0.94710 0.87671 0.92858 1.22969 0.94621 0.81388 1.06242 1.48046 1.45501 1.14968 1.24419 1.16659 0.78862 0.85302 0.79863 1.90834 1.61981 1.14833 1.73694 1.26105 1.04708 0.89799 1.01101 1.28218 0.94903 1.01524 0.88589 1.75134 1.15815 0.97055 1.20291 1.85123 1.45262 1.32417 1.25553 1.75307 1.10644 1.15626 1.02304 1.22577 0.95217 0.99339 0.86921 1.23102 0.93101 0.82888 1.04138 1.88145 1.80724 1.23151 1.37388 0.91167 0.77372 0.90031 0.86606 0.84010 0.90796 0.88751 0.88168 0.86109 0.72853 0.88369 0.87468 0.85618 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.64 13.96 21.66 0.30 -56.33 16 2 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 3 Si 0.97 38.46 27.73 68.60 1.90 40.37 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 7 C -0.33 -19.35 10.16 84.04 0.85 -18.49 16 8 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 9 N -0.59 -27.72 5.09 -306.98 -1.56 -29.28 16 10 C 0.45 20.11 7.82 87.65 0.69 20.80 16 11 O -0.62 -34.52 15.78 -3.06 -0.05 -34.57 16 12 C 0.06 1.86 6.17 85.56 0.53 2.38 16 13 N -0.68 -19.52 6.08 -517.93 -3.15 -22.67 16 14 C 0.07 1.32 5.36 86.30 0.46 1.78 16 15 C 0.08 1.56 2.96 30.70 0.09 1.65 16 16 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 17 C 0.07 1.00 5.61 86.35 0.48 1.48 16 18 N -0.60 -9.38 3.02 -820.25 -2.48 -11.85 16 19 C 0.61 10.53 7.72 86.92 0.67 11.20 16 20 O -0.54 -11.65 16.52 -3.74 -0.06 -11.71 16 21 C -0.05 -0.74 7.18 44.29 0.32 -0.43 16 22 C 0.05 0.55 12.63 87.31 1.10 1.65 16 23 N -0.36 -4.56 12.22 -61.45 -0.75 -5.31 16 24 O 0.34 4.46 11.65 140.85 1.64 6.10 16 25 N -0.32 -4.28 9.08 -52.06 -0.47 -4.76 16 26 C 0.08 1.13 6.65 86.35 0.57 1.70 16 27 C 0.05 0.75 6.99 72.08 0.50 1.25 16 28 O -0.38 -8.43 10.34 -148.98 -1.54 -9.97 16 29 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 30 H 0.39 14.94 5.76 -92.71 -0.53 14.41 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.34 10.57 8.43 -89.70 -0.76 9.81 16 34 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 37 H 0.12 1.59 4.47 -2.39 -0.01 1.58 16 38 H 0.26 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.48 7.06 -2.39 -0.02 1.47 16 41 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -82.35 359.69 0.28 -82.06 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.25 Total: 33.48 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 6.74 Total: 24.47 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -8.11 Total: -130.21 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.01 Total: -50.16 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.90 Total: 40.37 kcal Total: -82.35 0.28 -82.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724818103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.179 kcal (2) G-P(sol) polarization free energy of solvation -82.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds