Wall clock time and date at job start Tue Mar 31 2020 22:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34816 * 126.59433 * 2 1 4 4 C 1.36597 * 106.83979 * 180.13371 * 3 2 1 5 5 C 1.47523 * 125.76818 * 179.89872 * 4 3 2 6 6 O 1.21597 * 120.00081 * 359.71451 * 5 4 3 7 7 N 1.34774 * 119.99908 * 179.71430 * 5 4 3 8 8 C 1.46500 * 119.99908 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47089 * 180.02562 * 8 7 5 10 10 C 1.31005 * 119.99932 * 124.72256 * 9 8 7 11 11 C 1.50699 * 119.99776 * 180.27660 * 10 9 8 12 12 N 1.46500 * 109.46915 * 125.00274 * 11 10 9 13 13 C 1.34772 * 120.00015 * 179.97438 * 12 11 10 14 14 O 1.21285 * 120.00150 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00442 * 179.97438 * 13 12 11 16 16 S 1.80991 * 109.47476 * 180.02562 * 15 13 12 17 17 C 1.76206 * 100.00146 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99385 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00017 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99863 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00287 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47220 * 89.99703 * 21 19 17 23 23 H 1.48494 * 109.47310 * 210.00301 * 21 19 17 24 24 H 1.48500 * 109.47066 * 330.00278 * 21 19 17 25 25 N 1.34396 * 108.45890 * 359.63322 * 4 3 2 26 26 N 1.28761 * 109.52195 * 0.22828 * 25 4 3 27 27 H 1.09006 * 109.47135 * 270.24310 * 1 2 3 28 28 H 1.08999 * 109.47267 * 30.24103 * 1 2 3 29 29 H 1.08998 * 109.46965 * 150.24442 * 1 2 3 30 30 H 1.07999 * 126.57766 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00136 * 0.02562 * 7 5 4 32 32 H 1.09002 * 109.47243 * 60.00184 * 8 7 5 33 33 H 1.08999 * 109.47363 * 300.00163 * 8 7 5 34 34 H 1.08002 * 120.00299 * 305.00592 * 9 8 7 35 35 H 1.08002 * 119.99713 * 0.27722 * 10 9 8 36 36 H 1.09005 * 109.46922 * 245.00183 * 11 10 9 37 37 H 1.08994 * 109.47613 * 5.00521 * 11 10 9 38 38 H 0.97006 * 120.00083 * 0.02562 * 12 11 10 39 39 H 1.08994 * 109.46999 * 300.00958 * 15 13 12 40 40 H 1.09004 * 109.46529 * 60.00085 * 15 13 12 41 41 H 0.97002 * 119.99979 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6207 -0.0031 5 6 4.7703 1.4558 -0.0063 6 8 4.6754 2.6681 -0.0116 7 7 5.9865 0.8751 -0.0033 8 6 7.1942 1.7044 -0.0071 9 6 8.4126 0.8175 -0.0033 10 6 9.3224 0.9504 -0.9365 11 6 10.5377 0.0593 -0.9362 12 7 10.6478 -0.6168 -2.2312 13 6 11.6660 -1.4690 -2.4621 14 8 12.4910 -1.6765 -1.5977 15 6 11.7790 -2.1650 -3.7940 16 16 13.2386 -3.2351 -3.7938 17 6 13.1289 -3.9026 -5.4208 18 1 12.3193 -3.6078 -6.0719 19 6 14.0830 -4.8073 -5.8655 20 7 14.0007 -5.3064 -7.0808 21 14 15.4838 -5.3167 -4.7396 22 1 15.0785 -6.5099 -3.9539 23 1 16.6806 -5.6441 -5.5553 24 1 15.8057 -4.2008 -3.8141 25 7 3.5239 -0.7229 0.0033 26 7 2.3009 -1.1256 0.0053 27 1 -0.3634 0.0044 1.0277 28 1 -0.3634 0.8878 -0.5176 29 1 -0.3633 -0.8922 -0.5100 30 1 1.9560 2.1161 -0.0004 31 1 6.0623 -0.0919 0.0006 32 1 7.2028 2.3379 0.8799 33 1 7.2030 2.3294 -0.9000 34 1 8.5336 0.0693 0.7661 35 1 9.2014 1.6986 -1.7059 36 1 11.4298 0.6616 -0.7638 37 1 10.4429 -0.6843 -0.1451 38 1 9.9881 -0.4505 -2.9228 39 1 10.8871 -2.7675 -3.9659 40 1 11.8731 -1.4215 -4.5856 41 1 14.6677 -5.9383 -7.3917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738454111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:37 Heat of formation + Delta-G solvation = 41.883099 kcal Electronic energy + Delta-G solvation = -24210.794485 eV Core-core repulsion = 20254.913414 eV Total energy + Delta-G solvation = -3955.881071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.71477 -39.81086 -39.28603 -36.69771 -35.28824 -34.88620 -32.93786 -32.42464 -31.53731 -29.90745 -28.65767 -27.49049 -25.61211 -24.64837 -23.23817 -22.71747 -21.07564 -20.66954 -20.03379 -18.62067 -17.88903 -16.84951 -16.81038 -16.59897 -16.33026 -16.06253 -15.59744 -15.34341 -15.14804 -14.95322 -14.61521 -14.28280 -14.01082 -13.82870 -13.77490 -13.68346 -13.22539 -12.82640 -12.79271 -12.67540 -12.62767 -11.91048 -11.81798 -11.55955 -11.25287 -10.99541 -10.96146 -10.69693 -10.60251 -10.03263 -9.87562 -9.82406 -9.52229 -9.35857 -9.00589 -8.94469 -8.48939 -6.90515 -6.27597 -3.99375 0.59053 1.21015 1.40913 1.54474 2.80072 2.84346 2.86181 2.97402 3.33917 3.39564 3.51941 3.69660 3.71662 3.79026 4.19792 4.24762 4.31446 4.34542 4.42185 4.61517 4.61742 4.74544 4.82055 4.96405 5.11504 5.12695 5.15500 5.28668 5.35616 5.40507 5.66874 5.73916 5.78041 5.89039 6.02841 6.15603 6.23875 6.52192 6.99042 7.42330 7.60052 7.72574 7.95442 8.43058 8.48089 9.18607 10.81618 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.001554 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.084315 B =18011.042527 C =19270.921376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.363 5.363 3 C 0.095 3.905 4 C -0.105 4.105 5 C 0.607 3.393 6 O -0.540 6.540 7 N -0.711 5.711 8 C 0.150 3.850 9 C -0.164 4.164 10 C -0.141 4.141 11 C 0.147 3.853 12 N -0.734 5.734 13 C 0.531 3.469 14 O -0.520 6.520 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 N -0.203 5.203 26 N -0.061 5.061 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.206 0.794 31 H 0.412 0.588 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.401 0.599 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.780 16.939 16.025 37.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.148 5.148 3 C -0.062 4.062 4 C -0.244 4.244 5 C 0.391 3.609 6 O -0.416 6.416 7 N -0.363 5.363 8 C 0.028 3.972 9 C -0.183 4.183 10 C -0.160 4.160 11 C 0.024 3.976 12 N -0.389 5.389 13 C 0.317 3.683 14 O -0.394 6.394 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 N -0.077 5.077 26 N -0.042 5.042 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.223 0.777 31 H 0.248 0.752 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.235 0.765 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -27.372 15.818 17.335 36.054 hybrid contribution -0.930 0.549 -1.121 1.557 sum -28.302 16.367 16.214 36.493 Atomic orbital electron populations 1.22249 0.72231 1.06048 1.04970 1.50425 1.09330 1.05666 1.49354 1.23398 0.90105 0.95111 0.97606 1.21427 0.94536 0.90494 1.17969 1.16715 0.81726 0.86250 0.76175 1.90826 1.86695 1.13060 1.51030 1.45760 1.04747 1.11393 1.74351 1.20395 0.81219 0.92431 1.03173 1.22922 0.94845 1.00583 0.99972 1.23056 0.95416 0.99000 0.98542 1.20304 0.96214 0.94550 0.86540 1.45932 1.29741 1.46735 1.16472 1.20303 0.80319 0.78405 0.89310 1.90705 1.40270 1.62205 1.46231 1.23279 1.05120 1.02491 0.96574 1.84784 1.30446 1.54139 1.22191 1.22323 1.16470 1.30683 0.97461 0.89375 1.24711 0.97312 0.94416 0.94848 1.69940 1.35593 1.29651 1.16510 0.86731 0.82041 0.81417 0.81641 1.19206 1.19945 1.15923 1.74653 1.13082 1.10140 1.09830 1.82066 0.93373 1.06332 1.22422 0.89025 0.88208 0.87850 0.77698 0.75222 0.90103 0.90523 0.85986 0.86165 0.90437 0.90946 0.76488 0.88432 0.88406 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.03 11.51 59.84 0.69 0.72 16 2 N -0.36 -1.96 4.03 -67.86 -0.27 -2.24 16 3 C 0.10 0.54 11.31 -16.83 -0.19 0.35 16 4 C -0.10 -0.90 6.99 -83.55 -0.58 -1.49 16 5 C 0.61 5.73 7.82 -12.48 -0.10 5.63 16 6 O -0.54 -6.28 16.86 5.28 0.09 -6.19 16 7 N -0.71 -5.61 5.55 -62.53 -0.35 -5.96 16 8 C 0.15 1.05 6.11 -5.19 -0.03 1.02 16 9 C -0.16 -1.08 9.24 -36.03 -0.33 -1.41 16 10 C -0.14 -1.02 9.24 -36.03 -0.33 -1.35 16 11 C 0.15 1.52 6.11 -5.19 -0.03 1.49 16 12 N -0.73 -9.03 5.55 -61.47 -0.34 -9.37 16 13 C 0.53 9.32 7.85 -10.99 -0.09 9.24 16 14 O -0.52 -11.15 15.86 5.55 0.09 -11.06 16 15 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 16 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 21 Si 0.86 21.88 27.74 -169.99 -4.72 17.16 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.61 16 25 N -0.20 -2.02 12.04 32.85 0.40 -1.62 16 26 N -0.06 -0.56 13.78 60.35 0.83 0.27 16 27 H 0.09 -0.08 8.14 -51.93 -0.42 -0.51 16 28 H 0.10 -0.21 8.14 -51.93 -0.42 -0.63 16 29 H 0.10 0.00 8.14 -51.93 -0.42 -0.43 16 30 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 31 H 0.41 2.98 8.15 -40.82 -0.33 2.65 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.55 7.79 -51.93 -0.40 0.14 16 34 H 0.12 0.76 7.84 -52.49 -0.41 0.35 16 35 H 0.12 0.75 7.84 -52.49 -0.41 0.34 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.80 7.79 -51.93 -0.40 0.39 16 38 H 0.40 3.84 8.46 -40.82 -0.35 3.50 16 39 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.10 1.75 8.14 -51.91 -0.42 1.32 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -38.90 382.03 -5.57 -44.46 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.27 Total: 0.32 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.56 Total: -0.05 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 1.04 Total: -44.80 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.18 Total: -17.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.90 -5.57 -44.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738454111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.345 kcal (2) G-P(sol) polarization free energy of solvation -38.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds