Wall clock time and date at job start Tue Mar 31 2020 22:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34816 * 126.59433 * 2 1 4 4 C 1.36597 * 106.83979 * 180.13371 * 3 2 1 5 5 C 1.47523 * 125.76818 * 179.89872 * 4 3 2 6 6 O 1.21597 * 120.00081 * 359.71451 * 5 4 3 7 7 N 1.34774 * 119.99908 * 179.71430 * 5 4 3 8 8 C 1.46500 * 119.99908 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47089 * 180.02562 * 8 7 5 10 10 C 1.31005 * 119.99932 * 124.72256 * 9 8 7 11 11 C 1.50699 * 119.99776 * 180.27660 * 10 9 8 12 12 N 1.46500 * 109.46915 * 125.00274 * 11 10 9 13 13 C 1.34772 * 120.00015 * 179.97438 * 12 11 10 14 14 O 1.21285 * 120.00150 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00442 * 179.97438 * 13 12 11 16 16 S 1.80991 * 109.47476 * 180.02562 * 15 13 12 17 17 C 1.76206 * 100.00146 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99385 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00017 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99863 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00287 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47220 * 89.99703 * 21 19 17 23 23 H 1.48494 * 109.47310 * 210.00301 * 21 19 17 24 24 H 1.48500 * 109.47066 * 330.00278 * 21 19 17 25 25 N 1.34396 * 108.45890 * 359.63322 * 4 3 2 26 26 N 1.28761 * 109.52195 * 0.22828 * 25 4 3 27 27 H 1.09006 * 109.47135 * 270.24310 * 1 2 3 28 28 H 1.08999 * 109.47267 * 30.24103 * 1 2 3 29 29 H 1.08998 * 109.46965 * 150.24442 * 1 2 3 30 30 H 1.07999 * 126.57766 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00136 * 0.02562 * 7 5 4 32 32 H 1.09002 * 109.47243 * 60.00184 * 8 7 5 33 33 H 1.08999 * 109.47363 * 300.00163 * 8 7 5 34 34 H 1.08002 * 120.00299 * 305.00592 * 9 8 7 35 35 H 1.08002 * 119.99713 * 0.27722 * 10 9 8 36 36 H 1.09005 * 109.46922 * 245.00183 * 11 10 9 37 37 H 1.08994 * 109.47613 * 5.00521 * 11 10 9 38 38 H 0.97006 * 120.00083 * 0.02562 * 12 11 10 39 39 H 1.08994 * 109.46999 * 300.00958 * 15 13 12 40 40 H 1.09004 * 109.46529 * 60.00085 * 15 13 12 41 41 H 0.97002 * 119.99979 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6207 -0.0031 5 6 4.7703 1.4558 -0.0063 6 8 4.6754 2.6681 -0.0116 7 7 5.9865 0.8751 -0.0033 8 6 7.1942 1.7044 -0.0071 9 6 8.4126 0.8175 -0.0033 10 6 9.3224 0.9504 -0.9365 11 6 10.5377 0.0593 -0.9362 12 7 10.6478 -0.6168 -2.2312 13 6 11.6660 -1.4690 -2.4621 14 8 12.4910 -1.6765 -1.5977 15 6 11.7790 -2.1650 -3.7940 16 16 13.2386 -3.2351 -3.7938 17 6 13.1289 -3.9026 -5.4208 18 1 12.3193 -3.6078 -6.0719 19 6 14.0830 -4.8073 -5.8655 20 7 14.0007 -5.3064 -7.0808 21 14 15.4838 -5.3167 -4.7396 22 1 15.0785 -6.5099 -3.9539 23 1 16.6806 -5.6441 -5.5553 24 1 15.8057 -4.2008 -3.8141 25 7 3.5239 -0.7229 0.0033 26 7 2.3009 -1.1256 0.0053 27 1 -0.3634 0.0044 1.0277 28 1 -0.3634 0.8878 -0.5176 29 1 -0.3633 -0.8922 -0.5100 30 1 1.9560 2.1161 -0.0004 31 1 6.0623 -0.0919 0.0006 32 1 7.2028 2.3379 0.8799 33 1 7.2030 2.3294 -0.9000 34 1 8.5336 0.0693 0.7661 35 1 9.2014 1.6986 -1.7059 36 1 11.4298 0.6616 -0.7638 37 1 10.4429 -0.6843 -0.1451 38 1 9.9881 -0.4505 -2.9228 39 1 10.8871 -2.7675 -3.9659 40 1 11.8731 -1.4215 -4.5856 41 1 14.6677 -5.9383 -7.3917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738454111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:37 Heat of formation + Delta-G solvation = 10.195209 kcal Electronic energy + Delta-G solvation = -24212.168575 eV Core-core repulsion = 20254.913414 eV Total energy + Delta-G solvation = -3957.255161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.22720 -40.66606 -40.44851 -37.47704 -35.94906 -35.56472 -34.66750 -33.82545 -32.11302 -31.18320 -29.12546 -28.22752 -27.80899 -25.40620 -23.88043 -23.15942 -21.90294 -21.64847 -20.81259 -19.84156 -19.14634 -17.90170 -17.51921 -17.29099 -17.13479 -17.12492 -16.95291 -16.65344 -16.15087 -15.73376 -15.63049 -15.32539 -15.03288 -14.91584 -14.74039 -14.44699 -14.07764 -13.96734 -13.82137 -13.37342 -13.30899 -13.22102 -13.14089 -12.99540 -12.65254 -12.31597 -12.16787 -11.85825 -11.41426 -11.34882 -11.16510 -11.13132 -10.57128 -10.52776 -10.42218 -10.12781 -9.93079 -8.98840 -8.50952 -6.21818 0.14363 0.57199 0.79543 1.04593 1.19424 1.32269 1.48409 1.56934 1.59425 2.19715 2.23979 2.25747 2.39391 2.74392 2.87364 3.18526 3.49624 3.57676 3.88641 3.90150 3.95300 4.04556 4.23869 4.33676 4.37208 4.46739 4.48580 4.56488 4.58003 4.68054 4.69678 4.77211 4.86444 5.26137 5.34788 5.43593 5.58208 5.69626 5.71243 6.11975 6.35322 6.47440 6.86154 6.94253 7.07613 7.19349 8.61422 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.001554 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.084315 B =18011.042527 C =19270.921376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.351 5.351 3 C 0.110 3.890 4 C -0.130 4.130 5 C 0.607 3.393 6 O -0.567 6.567 7 N -0.707 5.707 8 C 0.152 3.848 9 C -0.148 4.148 10 C -0.140 4.140 11 C 0.147 3.853 12 N -0.709 5.709 13 C 0.535 3.465 14 O -0.563 6.563 15 C -0.112 4.112 16 S -0.176 6.176 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.046 3.954 20 N -0.917 5.917 21 Si 0.915 3.085 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.237 1.237 25 N -0.227 5.227 26 N -0.097 5.097 27 H 0.108 0.892 28 H 0.131 0.869 29 H 0.106 0.894 30 H 0.240 0.760 31 H 0.415 0.585 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.417 0.583 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.461 18.409 17.065 39.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.136 5.136 3 C -0.049 4.049 4 C -0.271 4.271 5 C 0.392 3.608 6 O -0.445 6.445 7 N -0.358 5.358 8 C 0.029 3.971 9 C -0.167 4.167 10 C -0.159 4.159 11 C 0.024 3.976 12 N -0.363 5.363 13 C 0.320 3.680 14 O -0.442 6.442 15 C -0.263 4.263 16 S 0.051 5.949 17 C -0.678 4.678 18 H 0.080 0.920 19 C -0.160 4.160 20 N -0.555 5.555 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.160 1.160 25 N -0.101 5.101 26 N -0.078 5.078 27 H 0.127 0.873 28 H 0.149 0.851 29 H 0.125 0.875 30 H 0.256 0.744 31 H 0.251 0.749 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.254 0.746 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -29.115 17.280 18.361 38.515 hybrid contribution -0.659 0.217 -1.419 1.579 sum -29.774 17.497 16.942 38.467 Atomic orbital electron populations 1.22736 0.69349 1.07811 1.06645 1.50755 1.10786 1.04649 1.47384 1.23917 0.89153 0.96358 0.95451 1.21559 0.95419 0.90321 1.19759 1.16848 0.82273 0.85999 0.75689 1.90801 1.87116 1.14002 1.52615 1.45781 1.04752 1.11630 1.73634 1.20413 0.80890 0.92366 1.03415 1.22906 0.94188 1.00029 0.99590 1.22870 0.94286 0.99142 0.99593 1.20398 0.97559 0.94634 0.84999 1.45720 1.28145 1.44699 1.17740 1.19950 0.81040 0.78991 0.88000 1.90694 1.42255 1.64055 1.47162 1.23278 1.02367 1.02019 0.98632 1.84699 1.34723 1.55817 1.19697 1.22476 1.15663 1.30794 0.98854 0.91967 1.25565 0.99700 0.94492 0.96194 1.70018 1.36872 1.30532 1.18065 0.85860 0.79573 0.80959 0.79937 1.18724 1.18306 1.16047 1.74606 1.13845 1.10961 1.10644 1.81968 0.93701 1.08094 1.24031 0.87333 0.85066 0.87521 0.74421 0.74896 0.89876 0.90320 0.85531 0.84564 0.90909 0.91436 0.74551 0.86882 0.86714 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.13 11.51 127.77 1.47 1.34 16 2 N -0.35 -3.22 4.03 -368.60 -1.49 -4.71 16 3 C 0.11 1.05 11.31 83.85 0.95 2.00 16 4 C -0.13 -2.15 6.99 40.82 0.29 -1.87 16 5 C 0.61 11.01 7.82 86.69 0.68 11.68 16 6 O -0.57 -12.66 16.86 -4.02 -0.07 -12.73 16 7 N -0.71 -10.48 5.55 -470.01 -2.61 -13.09 16 8 C 0.15 1.86 6.11 85.63 0.52 2.39 16 9 C -0.15 -1.64 9.24 25.64 0.24 -1.40 16 10 C -0.14 -1.69 9.24 25.64 0.24 -1.45 16 11 C 0.15 2.76 6.11 85.63 0.52 3.29 16 12 N -0.71 -15.92 5.55 -466.79 -2.59 -18.51 16 13 C 0.53 18.06 7.85 87.66 0.69 18.74 16 14 O -0.56 -23.82 15.86 -3.05 -0.05 -23.87 16 15 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 16 S -0.18 -8.92 18.55 -56.49 -1.05 -9.96 16 17 C -0.53 -31.05 10.04 67.95 0.68 -30.36 16 18 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 19 C 0.05 2.71 5.50 84.86 0.47 3.17 16 20 N -0.92 -56.09 13.97 21.65 0.30 -55.78 16 21 Si 0.91 45.23 27.74 68.60 1.90 47.14 16 22 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 25 N -0.23 -4.50 12.04 -50.00 -0.60 -5.10 16 26 N -0.10 -1.76 13.78 37.02 0.51 -1.25 16 27 H 0.11 -0.49 8.14 -2.38 -0.02 -0.51 16 28 H 0.13 -1.02 8.14 -2.39 -0.02 -1.04 16 29 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.24 0.44 8.06 -2.91 -0.02 0.42 16 31 H 0.41 5.70 8.15 -92.71 -0.76 4.95 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 0.98 7.79 -2.39 -0.02 0.96 16 34 H 0.13 1.33 7.84 -2.91 -0.02 1.31 16 35 H 0.14 1.28 7.84 -2.91 -0.02 1.25 16 36 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.07 1.38 7.79 -2.39 -0.02 1.36 16 38 H 0.42 6.80 8.46 -92.70 -0.78 6.02 16 39 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 40 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -85.85 382.03 0.95 -84.90 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -0.49 Total: 9.20 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 7.18 Total: 3.78 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -6.47 Total: -98.45 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.12 Total: -36.60 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.14 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.96 kcal Total: -85.85 0.95 -84.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738454111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.092 kcal (2) G-P(sol) polarization free energy of solvation -85.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds