Wall clock time and date at job start Tue Mar 31 2020 22:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34814 * 126.59278 * 2 1 4 4 C 1.36599 * 106.83931 * 180.12978 * 3 2 1 5 5 C 1.47526 * 125.77277 * 179.89715 * 4 3 2 6 6 O 1.21593 * 119.99670 * 359.72392 * 5 4 3 7 7 N 1.34771 * 119.99961 * 179.72216 * 5 4 3 8 8 C 1.46505 * 119.99611 * 180.02562 * 7 5 4 9 9 C 1.53009 * 109.46831 * 174.96827 * 8 7 5 10 10 N 1.46495 * 115.54715 * 85.77478 * 9 8 7 11 11 C 1.34779 * 120.00375 * 65.40694 * 10 9 8 12 12 O 1.21283 * 119.99626 * 354.97760 * 11 10 9 13 13 C 1.50700 * 120.00262 * 174.97499 * 11 10 9 14 14 S 1.81006 * 109.46951 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99857 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99846 * 359.97438 * 15 14 13 17 17 C 1.38795 * 120.00231 * 180.02562 * 15 14 13 18 18 N 1.31634 * 119.99666 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00450 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46757 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47209 * 119.99625 * 19 17 15 22 22 H 1.48496 * 109.47307 * 239.99979 * 19 17 15 23 23 C 1.52993 * 117.49722 * 231.44326 * 9 8 7 24 24 C 1.52997 * 117.49928 * 300.10289 * 9 8 7 25 25 N 1.34403 * 108.45674 * 359.64296 * 4 3 2 26 26 N 1.28762 * 109.52186 * 0.21877 * 25 4 3 27 27 H 1.08994 * 109.47181 * 270.24211 * 1 2 3 28 28 H 1.09002 * 109.47206 * 30.23788 * 1 2 3 29 29 H 1.09001 * 109.47246 * 150.24016 * 1 2 3 30 30 H 1.07998 * 126.58318 * 359.97438 * 3 2 1 31 31 H 0.96999 * 120.00486 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47545 * 54.97056 * 8 7 5 33 33 H 1.08996 * 109.46839 * 294.96726 * 8 7 5 34 34 H 0.97002 * 119.99938 * 245.40447 * 10 9 8 35 35 H 1.08999 * 109.47302 * 300.00003 * 13 11 10 36 36 H 1.08998 * 109.46945 * 60.00407 * 13 11 10 37 37 H 0.97004 * 119.99765 * 180.02562 * 18 17 15 38 38 H 1.09005 * 117.49813 * 215.00448 * 23 9 8 39 39 H 1.08997 * 117.50305 * 0.02987 * 23 9 8 40 40 H 1.08999 * 117.49998 * 359.97438 * 24 9 8 41 41 H 1.09000 * 117.49970 * 144.97302 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 -0.0030 5 6 4.7704 1.4558 -0.0062 6 8 4.6755 2.6680 -0.0114 7 7 5.9866 0.8750 -0.0033 8 6 7.1943 1.7044 -0.0059 9 6 8.4281 0.8089 0.1248 10 7 8.9463 0.2601 -1.1308 11 6 9.4603 1.0842 -2.0652 12 8 9.4114 2.2857 -1.9071 13 6 10.0958 0.5128 -3.3065 14 16 10.6869 1.8626 -4.3577 15 6 11.3620 0.9354 -5.6953 16 1 11.3223 -0.1438 -5.6787 17 6 11.9457 1.5918 -6.7699 18 7 11.9946 2.9071 -6.7899 19 14 12.6621 0.6089 -8.1877 20 1 12.4825 -0.8416 -7.9250 21 1 11.9639 0.9747 -9.4462 22 1 14.1098 0.9122 -8.3187 23 6 9.4429 1.1593 1.2147 24 6 8.5378 -0.0645 1.3761 25 7 3.5239 -0.7229 0.0032 26 7 2.3008 -1.1256 0.0052 27 1 -0.3633 0.0043 1.0276 28 1 -0.3634 0.8879 -0.5175 29 1 -0.3634 -0.8921 -0.5101 30 1 1.9561 2.1162 -0.0004 31 1 6.0623 -0.0920 0.0013 32 1 7.1595 2.3996 0.8328 33 1 7.2487 2.2639 -0.9397 34 1 8.9195 -0.6964 -1.2896 35 1 10.9356 -0.1226 -3.0251 36 1 9.3602 -0.0779 -3.8523 37 1 12.4022 3.3659 -7.5411 38 1 10.4962 0.9814 0.9977 39 1 9.2315 2.0273 1.8391 40 1 7.7312 -0.0009 2.1065 41 1 8.9951 -1.0477 1.2652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738747037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:20 Heat of formation + Delta-G solvation = 56.662922 kcal Electronic energy + Delta-G solvation = -25709.467578 eV Core-core repulsion = 21754.227408 eV Total energy + Delta-G solvation = -3955.240169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.54727 -40.09063 -39.10448 -37.29202 -35.11884 -34.20298 -32.72214 -32.41291 -31.38850 -29.06243 -28.59073 -27.06661 -25.47356 -23.67525 -22.80309 -22.59074 -21.39188 -20.63926 -19.68859 -18.47426 -17.83907 -16.82857 -16.65187 -16.36891 -16.34215 -15.82827 -15.17848 -15.07239 -14.93304 -14.79347 -14.51620 -14.16926 -13.96117 -13.79957 -13.57747 -13.26173 -12.80266 -12.72284 -12.51223 -12.42646 -11.95154 -11.71806 -11.66463 -11.06669 -11.00719 -11.00192 -10.80812 -10.76553 -10.61308 -10.21740 -9.79450 -9.68895 -9.42277 -9.07776 -9.06223 -8.91806 -8.21687 -6.48316 -6.20544 -3.90798 0.75501 1.40667 1.62255 2.83958 2.93866 3.06435 3.10464 3.22560 3.27691 3.32440 3.58532 3.68718 3.88111 3.94342 4.21395 4.37651 4.39633 4.42987 4.59657 4.67856 4.72675 4.77805 4.96918 5.11039 5.14727 5.35039 5.40167 5.42846 5.55972 5.71455 5.75307 5.88989 5.89559 5.93306 5.97822 6.14868 6.24936 6.66316 7.26191 7.60146 7.61132 7.68553 8.01592 8.36657 8.61431 9.24942 10.86875 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013425 B = 0.002249 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.174854 B =12448.862145 C =13571.719802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.364 5.364 3 C 0.094 3.906 4 C -0.100 4.100 5 C 0.603 3.397 6 O -0.536 6.536 7 N -0.709 5.709 8 C 0.150 3.850 9 C 0.089 3.911 10 N -0.709 5.709 11 C 0.535 3.465 12 O -0.506 6.506 13 C -0.153 4.153 14 S -0.058 6.058 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.157 4.157 24 C -0.169 4.169 25 N -0.204 5.204 26 N -0.066 5.066 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.206 0.794 31 H 0.407 0.593 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.094 -8.525 18.974 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.149 5.149 3 C -0.063 4.063 4 C -0.239 4.239 5 C 0.387 3.613 6 O -0.412 6.412 7 N -0.360 5.360 8 C 0.026 3.974 9 C 0.000 4.000 10 N -0.364 5.364 11 C 0.321 3.679 12 O -0.379 6.379 13 C -0.304 4.304 14 S 0.169 5.831 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.196 4.196 24 C -0.207 4.207 25 N -0.078 5.078 26 N -0.046 5.046 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.223 0.777 31 H 0.243 0.757 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.149 -6.991 19.117 29.354 hybrid contribution 0.290 -1.939 -1.276 2.340 sum -20.860 -8.930 17.841 28.865 Atomic orbital electron populations 1.22221 0.72374 1.05971 1.04832 1.50381 1.09223 1.05685 1.49638 1.23409 0.90129 0.95092 0.97630 1.21494 0.94654 0.90396 1.17389 1.16713 0.81698 0.86320 0.76592 1.90843 1.86594 1.13012 1.50729 1.45764 1.04961 1.11073 1.74176 1.21154 0.79925 0.91740 1.04601 1.20624 0.96352 1.01479 0.81519 1.45433 1.64292 1.10315 1.16364 1.20351 0.77049 0.86894 0.83556 1.90708 1.55305 1.14622 1.77252 1.23537 1.02993 1.06340 0.97512 1.85417 1.74599 1.05438 1.17690 1.22909 1.44274 0.94888 1.06244 0.90893 1.24997 0.95486 0.95140 0.98026 1.70032 1.42124 1.06962 1.31126 0.86115 0.78671 0.79715 0.80983 1.19631 1.20575 1.20578 1.23368 0.97317 0.98910 1.00007 1.23333 1.03215 0.96409 0.97717 1.74621 1.12986 1.10267 1.09935 1.82010 0.93441 1.06448 1.22740 0.89134 0.88247 0.87979 0.77684 0.75739 0.89947 0.88977 0.76406 0.89183 0.89260 0.92244 0.87820 0.87741 0.87623 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.16 11.51 59.85 0.69 0.85 16 2 N -0.36 -2.57 4.03 -67.86 -0.27 -2.84 16 3 C 0.09 0.75 11.31 -16.83 -0.19 0.56 16 4 C -0.10 -1.10 6.99 -83.55 -0.58 -1.68 16 5 C 0.60 7.77 7.82 -12.48 -0.10 7.68 16 6 O -0.54 -8.41 16.86 5.28 0.09 -8.32 16 7 N -0.71 -8.24 5.44 -61.35 -0.33 -8.58 16 8 C 0.15 1.96 5.63 -4.03 -0.02 1.93 16 9 C 0.09 1.03 1.79 -131.82 -0.24 0.79 16 10 N -0.71 -9.24 5.45 -47.61 -0.26 -9.50 16 11 C 0.54 9.80 7.66 -10.98 -0.08 9.72 16 12 O -0.51 -11.23 14.64 5.56 0.08 -11.14 16 13 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 14 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 15 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 16 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 19 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.16 -1.64 10.11 -26.70 -0.27 -1.91 16 24 C -0.17 -1.38 9.94 -26.70 -0.27 -1.65 16 25 N -0.20 -2.35 12.04 32.85 0.40 -1.95 16 26 N -0.07 -0.69 13.78 60.35 0.83 0.14 16 27 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.10 -0.04 8.14 -51.93 -0.42 -0.47 16 29 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.21 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.41 4.11 8.06 -40.82 -0.33 3.78 16 32 H 0.08 1.04 7.89 -51.93 -0.41 0.63 16 33 H 0.09 1.56 6.83 -51.93 -0.35 1.21 16 34 H 0.40 4.06 8.83 -40.82 -0.36 3.70 16 35 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 40 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -38.75 379.80 -6.11 -44.86 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.22 Total: 4.02 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.64 Total: 0.41 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 1.09 Total: -48.30 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.17 Total: -19.46 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.75 -6.11 -44.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738747037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.520 kcal (2) G-P(sol) polarization free energy of solvation -38.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds