Wall clock time and date at job start Tue Mar 31 2020 22:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00295 * 2 1 4 4 C 1.52995 * 109.47101 * 275.46831 * 3 2 1 5 5 H 1.09006 * 112.96441 * 66.82765 * 4 3 2 6 6 C 1.53947 * 113.77169 * 295.15037 * 4 3 2 7 7 C 1.53946 * 86.28732 * 222.08982 * 6 4 3 8 8 N 1.47576 * 113.77056 * 198.64947 * 4 3 2 9 9 C 1.34774 * 134.49429 * 318.94688 * 8 4 3 10 10 O 1.21284 * 119.99873 * 5.00052 * 9 8 4 11 11 C 1.50701 * 120.00069 * 185.00366 * 9 8 4 12 12 S 1.81003 * 109.47023 * 179.97438 * 11 9 8 13 13 C 1.76199 * 99.99961 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00078 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00156 * 180.02562 * 13 12 11 16 16 N 1.31629 * 120.00196 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99862 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.46608 * 90.00553 * 17 15 13 19 19 H 1.48501 * 109.47184 * 210.00119 * 17 15 13 20 20 H 1.48491 * 109.47340 * 330.00945 * 17 15 13 21 21 C 1.34779 * 120.00007 * 179.97438 * 2 1 3 22 22 O 1.21556 * 120.00337 * 174.58395 * 21 2 1 23 23 C 1.47877 * 119.99943 * 354.86828 * 21 2 1 24 24 N 1.34551 * 126.04728 * 4.53053 * 23 21 2 25 25 C 1.30862 * 107.26815 * 179.83962 * 24 23 21 26 26 N 1.34588 * 107.62706 * 0.41974 * 25 24 23 27 27 H 0.97003 * 125.75180 * 179.76052 * 26 25 24 28 28 N 1.28853 * 108.50180 * 359.73585 * 26 25 24 29 29 H 1.09009 * 109.46933 * 244.43608 * 1 2 3 30 30 H 1.08999 * 109.47513 * 4.43119 * 1 2 3 31 31 H 1.08996 * 109.47215 * 124.44104 * 1 2 3 32 32 H 1.08995 * 109.46625 * 35.46871 * 3 2 1 33 33 H 1.09007 * 109.46929 * 155.46823 * 3 2 1 34 34 H 1.09004 * 113.73781 * 336.43298 * 6 4 3 35 35 H 1.08997 * 113.74392 * 107.63866 * 6 4 3 36 36 H 1.09002 * 113.77083 * 137.90327 * 7 6 4 37 37 H 1.08997 * 113.77265 * 269.19239 * 7 6 4 38 38 H 1.08998 * 109.47040 * 299.99831 * 11 9 8 39 39 H 1.08996 * 109.47392 * 59.99993 * 11 9 8 40 40 H 0.97003 * 119.99992 * 179.97438 * 16 15 13 41 41 H 1.08000 * 126.18878 * 180.15521 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3335 1.7791 -1.4359 5 1 1.3788 2.0641 -1.8782 6 6 3.1893 0.8719 -2.3385 7 6 3.8078 2.1705 -2.8872 8 7 3.3971 2.7870 -1.6107 9 6 3.8227 3.8454 -0.8930 10 8 3.3401 4.0730 0.1962 11 6 4.8981 4.7461 -1.4438 12 16 5.2472 6.0657 -0.2551 13 6 6.5007 6.9419 -1.1300 14 1 6.8193 6.5998 -2.1036 15 6 7.0794 8.0712 -0.5676 16 7 8.0154 8.7261 -1.2215 17 14 6.5288 8.6624 1.1167 18 1 7.3618 8.0183 2.1639 19 1 6.6837 10.1371 1.1986 20 1 5.1037 8.3018 1.3264 21 6 2.1388 -1.1672 0.0005 22 8 3.3503 -1.1697 -0.0988 23 6 1.4039 -2.4453 0.1156 24 7 0.0664 -2.5901 0.1400 25 6 -0.1838 -3.8700 0.2474 26 7 0.9972 -4.5133 0.2987 27 1 1.1171 -5.4723 0.3818 28 7 1.9419 -3.6408 0.2182 29 1 -0.3633 -0.4435 0.9271 30 1 -0.3634 1.0246 -0.0794 31 1 -0.3633 -0.5812 -0.8475 32 1 1.6543 2.0018 0.5963 33 1 3.1889 1.1158 0.4267 34 1 3.8946 0.2473 -1.7903 35 1 2.6108 0.3141 -3.0748 36 1 4.8881 2.1195 -3.0229 37 1 3.2883 2.5710 -3.7577 38 1 5.8038 4.1655 -1.6190 39 1 4.5597 5.1838 -2.3829 40 1 8.4196 9.5155 -0.8285 41 1 -1.1613 -4.3272 0.2916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739802716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:47 Heat of formation + Delta-G solvation = 46.911193 kcal Electronic energy + Delta-G solvation = -26396.025428 eV Core-core repulsion = 22440.362392 eV Total energy + Delta-G solvation = -3955.663036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.44524 -41.67636 -40.47387 -38.72989 -36.73901 -34.68827 -34.49535 -32.52022 -32.17569 -30.24504 -29.45225 -27.86035 -27.70200 -25.92188 -23.93204 -23.74816 -22.95156 -20.79825 -20.30769 -19.59169 -19.47084 -18.16691 -17.77390 -17.68503 -17.53604 -17.17628 -16.96662 -16.67812 -16.12575 -15.85048 -15.61608 -15.25823 -14.93918 -14.89308 -14.30573 -14.05690 -13.89115 -13.75169 -13.51777 -13.42068 -13.26252 -13.03136 -12.90046 -12.76803 -12.65532 -12.43630 -11.86891 -11.82743 -11.67070 -11.49517 -11.29023 -11.18471 -10.85189 -10.78772 -10.56671 -9.99549 -9.59327 -9.01914 -8.52737 -6.24114 0.29184 0.91489 1.18565 1.30636 1.30775 1.46509 1.51562 1.56832 1.92152 2.19457 2.23351 2.25056 2.65593 2.85127 3.00944 3.35080 3.54803 3.55693 3.80764 3.98373 4.01618 4.08408 4.17104 4.34170 4.39278 4.40369 4.49947 4.57892 4.66541 4.85525 4.88170 4.89714 4.96152 5.08386 5.29567 5.31679 5.43621 5.69458 5.94780 6.09641 6.18440 6.56129 6.82498 6.91930 7.05346 7.09509 8.59721 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029024 B = 0.002140 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.476436 B =13079.332003 C =13305.777276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.587 5.587 3 C 0.125 3.875 4 C 0.123 3.877 5 H 0.124 0.876 6 C -0.136 4.136 7 C 0.103 3.897 8 N -0.642 5.642 9 C 0.554 3.446 10 O -0.559 6.559 11 C -0.102 4.102 12 S -0.171 6.171 13 C -0.530 4.530 14 H 0.061 0.939 15 C 0.045 3.955 16 N -0.916 5.916 17 Si 0.916 3.084 18 H -0.263 1.263 19 H -0.256 1.256 20 H -0.236 1.236 21 C 0.605 3.395 22 O -0.555 6.555 23 C 0.128 3.872 24 N -0.499 5.499 25 C 0.220 3.780 26 N -0.385 5.385 27 H 0.471 0.529 28 N -0.284 5.284 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.277 0.723 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.176 -31.288 -2.045 39.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.319 5.319 3 C 0.001 3.999 4 C 0.019 3.981 5 H 0.141 0.859 6 C -0.174 4.174 7 C -0.019 4.019 8 N -0.379 5.379 9 C 0.342 3.658 10 O -0.437 6.437 11 C -0.253 4.253 12 S 0.055 5.945 13 C -0.677 4.677 14 H 0.079 0.921 15 C -0.160 4.160 16 N -0.554 5.554 17 Si 0.737 3.263 18 H -0.188 1.188 19 H -0.180 1.180 20 H -0.160 1.160 21 C 0.390 3.610 22 O -0.430 6.430 23 C -0.152 4.152 24 N -0.226 5.226 25 C -0.077 4.077 26 N -0.110 5.110 27 H 0.321 0.679 28 N -0.125 5.125 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -23.604 -30.306 -0.427 38.415 hybrid contribution 1.043 -0.251 -0.608 1.234 sum -22.560 -30.557 -1.036 37.997 Atomic orbital electron populations 1.22100 0.75433 1.03437 1.03959 1.47483 1.09110 1.03669 1.71658 1.21452 0.97640 0.84101 0.96701 1.23421 0.93511 0.85162 0.95966 0.85877 1.23535 0.99112 0.95899 0.98838 1.23490 1.02360 0.89497 0.86511 1.50155 1.35901 1.27244 1.24574 1.19643 0.82529 0.79281 0.84298 1.90664 1.59262 1.72092 1.21725 1.23175 1.00759 0.98412 1.02950 1.84640 1.50327 1.30486 1.29029 1.22443 1.23500 1.15103 1.06698 0.92122 1.25578 0.93779 0.95219 1.01454 1.70016 1.26048 1.19295 1.40000 0.85853 0.81616 0.79156 0.79649 1.18812 1.18034 1.16019 1.16695 0.85398 0.82127 0.76780 1.90811 1.14629 1.86885 1.50669 1.23350 0.89338 0.92855 1.09629 1.71515 1.11865 1.18137 1.21073 1.27761 0.95071 0.87496 0.97333 1.45286 1.03880 1.11840 1.49995 0.67853 1.74298 1.19260 0.99838 1.19142 0.91176 0.89541 0.89701 0.89304 0.92234 0.90033 0.87442 0.89516 0.86465 0.87932 0.87158 0.91309 0.69913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 9.05 127.77 1.16 2.40 16 2 N -0.59 -12.41 2.79 -850.16 -2.37 -14.78 16 3 C 0.12 3.18 4.72 86.38 0.41 3.59 16 4 C 0.12 2.72 4.54 45.09 0.20 2.93 16 5 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 6 C -0.14 -2.67 7.21 31.25 0.23 -2.44 16 7 C 0.10 2.02 8.61 86.48 0.74 2.77 16 8 N -0.64 -18.18 3.49 -813.88 -2.84 -21.02 16 9 C 0.55 21.20 7.99 87.66 0.70 21.90 16 10 O -0.56 -25.22 15.90 -3.04 -0.05 -25.27 16 11 C -0.10 -4.23 5.91 71.24 0.42 -3.81 16 12 S -0.17 -9.08 18.55 -56.49 -1.05 -10.13 16 13 C -0.53 -31.93 10.04 67.95 0.68 -31.25 16 14 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 15 C 0.05 2.72 5.50 84.86 0.47 3.19 16 16 N -0.92 -56.91 13.97 21.65 0.30 -56.61 16 17 Si 0.92 46.19 27.74 68.60 1.90 48.10 16 18 H -0.26 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 21 C 0.61 15.53 7.31 86.80 0.63 16.17 16 22 O -0.55 -18.45 14.72 -3.89 -0.06 -18.51 16 23 C 0.13 2.61 7.71 137.13 1.06 3.67 16 24 N -0.50 -6.32 8.00 -193.03 -1.54 -7.87 16 25 C 0.22 0.69 13.14 180.30 2.37 3.06 16 26 N -0.38 -2.27 6.93 -60.38 -0.42 -2.69 16 27 H 0.47 -1.40 8.96 -219.79 -1.97 -3.37 16 28 N -0.28 -5.31 12.30 -52.43 -0.65 -5.95 16 29 H 0.07 0.96 7.37 -2.38 -0.02 0.94 16 30 H 0.09 0.92 7.90 -2.39 -0.02 0.91 16 31 H 0.08 0.99 7.18 -2.39 -0.02 0.97 16 32 H 0.09 2.33 8.02 -2.39 -0.02 2.31 16 33 H 0.06 1.97 7.34 -2.38 -0.02 1.95 16 34 H 0.08 2.12 6.31 -2.38 -0.02 2.11 16 35 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 39 H 0.11 4.22 8.14 -2.40 -0.02 4.20 16 40 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.29 -2.75 8.06 -2.91 -0.02 -2.78 16 Total: -1.00 -91.67 363.41 1.38 -90.29 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -0.93 Total: 2.27 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 9.07 Total: 22.17 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -7.52 Total: -108.92 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.11 Total: -43.77 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.10 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -91.67 1.38 -90.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739802716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.202 kcal (2) G-P(sol) polarization free energy of solvation -91.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds