Wall clock time and date at job start Tue Mar 31 2020 22:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28711 * 126.04055 * 2 1 4 4 N 1.28514 * 110.64579 * 180.02562 * 3 2 1 5 5 C 1.33319 * 109.42999 * 359.72326 * 4 3 2 6 6 C 1.37001 * 106.37778 * 0.43418 * 5 4 3 7 7 C 1.47239 * 127.18975 * 179.85089 * 6 5 4 8 8 O 1.21612 * 119.99799 * 353.89086 * 7 6 5 9 9 N 1.34780 * 119.99840 * 173.89994 * 7 6 5 10 10 C 1.46494 * 120.00040 * 184.79863 * 9 7 6 11 11 C 1.52998 * 115.54880 * 279.47312 * 10 9 7 12 12 N 1.46498 * 109.46999 * 325.48786 * 11 10 9 13 13 C 1.34776 * 120.00172 * 184.90603 * 12 11 10 14 14 O 1.21277 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00161 * 179.97438 * 13 12 11 16 16 S 1.80997 * 109.47171 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99922 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99582 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00003 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99672 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47086 * 89.99408 * 21 19 17 23 23 H 1.48491 * 109.47296 * 209.99721 * 21 19 17 24 24 H 1.48507 * 109.47102 * 330.00034 * 21 19 17 25 25 C 1.53001 * 117.50305 * 133.75740 * 10 9 7 26 26 C 1.53003 * 60.00207 * 252.51360 * 25 10 9 27 27 H 1.08998 * 109.46911 * 262.95457 * 1 2 3 28 28 H 1.09000 * 109.47106 * 22.95102 * 1 2 3 29 29 H 1.08992 * 109.47200 * 142.95124 * 1 2 3 30 30 H 1.08009 * 126.81087 * 180.31077 * 5 4 3 31 31 H 0.96998 * 120.00130 * 4.79158 * 9 7 6 32 32 H 1.08993 * 109.47786 * 85.49162 * 11 10 9 33 33 H 1.09009 * 109.46955 * 205.49153 * 11 10 9 34 34 H 0.97000 * 120.00144 * 4.90086 * 12 11 10 35 35 H 1.09007 * 109.47118 * 300.00124 * 15 13 12 36 36 H 1.08997 * 109.46733 * 59.99725 * 15 13 12 37 37 H 0.97001 * 119.99525 * 180.02562 * 20 19 17 38 38 H 1.08999 * 117.49474 * 0.02562 * 25 10 9 39 39 H 1.08996 * 117.49896 * 145.01523 * 25 10 9 40 40 H 1.09000 * 117.49552 * 252.51075 * 26 25 10 41 41 H 1.08993 * 117.51631 * 107.48137 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4613 0.6996 -0.0005 5 6 3.5551 -0.6303 0.0052 6 6 2.2712 -1.1082 -0.0006 7 6 1.8462 -2.5179 -0.0007 8 8 2.6739 -3.4024 -0.1074 9 7 0.5399 -2.8279 0.1172 10 6 0.1263 -4.2293 0.2229 11 6 0.0517 -4.9967 -1.0986 12 7 -0.3905 -4.0933 -2.1636 13 6 -0.6250 -4.5737 -3.4008 14 8 -0.4703 -5.7541 -3.6323 15 6 -1.0804 -3.6444 -4.4963 16 16 -1.3070 -4.5823 -6.0277 17 6 -1.8241 -3.2878 -7.1056 18 1 -1.9116 -2.2778 -6.7333 19 6 -2.1188 -3.5662 -8.4330 20 7 -2.0116 -4.7973 -8.8868 21 14 -2.6662 -2.1939 -9.5759 22 1 -1.4769 -1.5871 -10.2260 23 1 -3.5706 -2.7468 -10.6158 24 1 -3.3863 -1.1565 -8.7944 25 6 -0.8947 -4.5849 1.3055 26 6 0.5679 -5.0044 1.4660 27 1 -0.3633 -0.1260 1.0199 28 1 -0.3633 0.9463 -0.4007 29 1 -0.3633 -0.8201 -0.6191 30 1 4.4633 -1.2150 0.0109 31 1 -0.1264 -2.1232 0.1322 32 1 1.0366 -5.3936 -1.3444 33 1 -0.6575 -5.8189 -1.0018 34 1 -0.5147 -3.1492 -1.9784 35 1 -2.0248 -3.1810 -4.2105 36 1 -0.3287 -2.8708 -4.6523 37 1 -2.2173 -4.9917 -9.8146 38 1 -1.2590 -3.7760 1.9389 39 1 -1.6200 -5.3655 1.0763 40 1 0.8048 -6.0611 1.3424 41 1 1.1664 -4.4717 2.2049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759876987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:15 Heat of formation + Delta-G solvation = 72.569771 kcal Electronic energy + Delta-G solvation = -26573.742610 eV Core-core repulsion = 22619.192213 eV Total energy + Delta-G solvation = -3954.550397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.78311 -40.63900 -39.10099 -37.78272 -35.66075 -34.08357 -33.40833 -32.46631 -31.61265 -29.85821 -28.83954 -26.59281 -25.47440 -24.82239 -23.15103 -22.88961 -21.67304 -20.45029 -20.44815 -18.58725 -18.05961 -17.39855 -17.26632 -16.89901 -16.44633 -15.78486 -15.44171 -15.16271 -15.11748 -14.84211 -14.80689 -14.45146 -14.06360 -13.94715 -13.65011 -13.45317 -13.22388 -12.76185 -12.60144 -12.54932 -12.05971 -11.89384 -11.60982 -11.49578 -11.09816 -11.06533 -10.87905 -10.80046 -10.74127 -10.46483 -10.00384 -9.87873 -9.77221 -9.48352 -9.10905 -8.96816 -8.28711 -6.54519 -6.25426 -3.96523 0.42568 1.54714 1.88203 2.19864 2.58234 2.91009 3.00596 3.12670 3.19578 3.25396 3.28616 3.52342 3.62573 3.85223 4.13248 4.15564 4.16520 4.24657 4.34156 4.43394 4.53604 4.60488 4.95342 4.96561 5.07975 5.09812 5.12431 5.36286 5.42337 5.55995 5.57856 5.59620 5.69352 5.77193 5.80479 5.88460 6.04138 6.47071 6.66848 7.47078 7.54800 7.57013 7.86883 8.30899 8.51293 9.19806 10.81975 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011213 B = 0.002880 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.459966 B = 9718.399774 C =11398.169346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.276 5.276 3 N -0.050 5.050 4 N -0.272 5.272 5 C 0.036 3.964 6 C -0.078 4.078 7 C 0.601 3.399 8 O -0.493 6.493 9 N -0.705 5.705 10 C 0.081 3.919 11 C 0.154 3.846 12 N -0.735 5.735 13 C 0.532 3.468 14 O -0.513 6.513 15 C -0.153 4.153 16 S -0.057 6.057 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.165 4.165 26 C -0.150 4.150 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.100 0.900 30 H 0.205 0.795 31 H 0.397 0.603 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.390 0.610 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.269 0.731 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 7.504 25.636 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.076 5.076 3 N -0.031 5.031 4 N -0.135 5.135 5 C -0.124 4.124 6 C -0.210 4.210 7 C 0.385 3.615 8 O -0.364 6.364 9 N -0.362 5.362 10 C -0.007 4.007 11 C 0.028 3.972 12 N -0.389 5.389 13 C 0.318 3.682 14 O -0.387 6.387 15 C -0.304 4.304 16 S 0.170 5.830 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.202 4.202 26 C -0.189 4.189 27 H 0.122 0.878 28 H 0.140 0.860 29 H 0.118 0.882 30 H 0.221 0.779 31 H 0.238 0.762 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.224 0.776 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.827 6.255 25.017 25.942 hybrid contribution -1.105 2.025 -0.398 2.341 sum 1.722 8.279 24.619 26.031 Atomic orbital electron populations 1.22614 0.72513 1.07282 1.05403 1.47776 1.09333 1.04307 1.46156 1.78279 0.96835 1.11454 1.16548 1.75019 1.08820 1.12445 1.17195 1.23910 0.96960 0.91168 1.00314 1.22278 0.92439 0.89220 1.17068 1.16735 0.82690 0.85322 0.76783 1.90907 1.51592 1.46820 1.47067 1.45692 1.07075 1.07627 1.75840 1.20915 1.05547 0.82347 0.91846 1.21026 1.01446 0.91706 0.83010 1.45834 1.71569 1.11568 1.09960 1.20310 0.76446 0.89141 0.82320 1.90715 1.49808 1.16785 1.81343 1.23526 1.03672 1.02589 1.00616 1.85431 1.88041 1.12505 0.97040 1.22854 1.52855 0.95640 0.97195 0.90988 1.24992 0.94963 0.96361 0.97224 1.70017 1.45591 1.18475 1.16095 0.86166 0.78612 0.80894 0.79815 1.20233 1.20700 1.19721 1.23524 0.93315 1.03846 0.99559 1.23279 0.96674 1.01525 0.97377 0.87830 0.86014 0.88219 0.77866 0.76222 0.90382 0.89864 0.77643 0.89300 0.89445 0.92127 0.88071 0.86856 0.87081 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.16 9.93 59.85 0.59 0.75 16 2 N -0.28 -2.11 3.79 -64.12 -0.24 -2.35 16 3 N -0.05 -0.53 13.14 60.35 0.79 0.27 16 4 N -0.27 -3.18 12.35 30.47 0.38 -2.80 16 5 C 0.04 0.37 11.87 -17.35 -0.21 0.16 16 6 C -0.08 -0.71 6.98 -82.33 -0.57 -1.29 16 7 C 0.60 5.74 7.70 -12.60 -0.10 5.64 16 8 O -0.49 -6.43 16.69 5.27 0.09 -6.34 16 9 N -0.70 -4.65 4.17 -48.73 -0.20 -4.86 16 10 C 0.08 0.61 1.98 -131.82 -0.26 0.34 16 11 C 0.15 1.71 5.90 -4.04 -0.02 1.68 16 12 N -0.73 -9.24 5.46 -60.29 -0.33 -9.57 16 13 C 0.53 9.63 7.85 -10.98 -0.09 9.55 16 14 O -0.51 -11.43 15.86 5.56 0.09 -11.34 16 15 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 16 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 17 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 21 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.16 -0.81 10.10 -26.73 -0.27 -1.08 16 26 C -0.15 -0.98 9.77 -26.73 -0.26 -1.24 16 27 H 0.10 0.00 8.14 -51.93 -0.42 -0.43 16 28 H 0.12 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.10 0.12 5.99 -51.93 -0.31 -0.19 16 30 H 0.20 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.40 1.44 4.65 -40.82 -0.19 1.25 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.92 7.90 -51.92 -0.41 0.51 16 34 H 0.39 3.74 7.57 -40.82 -0.31 3.43 16 35 H 0.09 1.56 8.14 -51.91 -0.42 1.13 16 36 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.11 0.53 8.05 -51.93 -0.42 0.11 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -39.05 372.83 -6.07 -45.11 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.99 Total: 0.14 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.77 Total: -1.09 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 1.13 Total: -44.53 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.18 Total: -17.68 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.05 -6.07 -45.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759876987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.683 kcal (2) G-P(sol) polarization free energy of solvation -39.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds