Wall clock time and date at job start Tue Mar 31 2020 22:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28711 * 126.04055 * 2 1 4 4 N 1.28514 * 110.64579 * 180.02562 * 3 2 1 5 5 C 1.33319 * 109.42999 * 359.72326 * 4 3 2 6 6 C 1.37001 * 106.37778 * 0.43418 * 5 4 3 7 7 C 1.47239 * 127.18975 * 179.85089 * 6 5 4 8 8 O 1.21612 * 119.99799 * 353.89086 * 7 6 5 9 9 N 1.34780 * 119.99840 * 173.89994 * 7 6 5 10 10 C 1.46494 * 120.00040 * 184.79863 * 9 7 6 11 11 C 1.52998 * 115.54880 * 279.47312 * 10 9 7 12 12 N 1.46498 * 109.46999 * 325.48786 * 11 10 9 13 13 C 1.34776 * 120.00172 * 184.90603 * 12 11 10 14 14 O 1.21277 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00161 * 179.97438 * 13 12 11 16 16 S 1.80997 * 109.47171 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99922 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99582 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00003 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99672 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47086 * 89.99408 * 21 19 17 23 23 H 1.48491 * 109.47296 * 209.99721 * 21 19 17 24 24 H 1.48507 * 109.47102 * 330.00034 * 21 19 17 25 25 C 1.53001 * 117.50305 * 133.75740 * 10 9 7 26 26 C 1.53003 * 60.00207 * 252.51360 * 25 10 9 27 27 H 1.08998 * 109.46911 * 262.95457 * 1 2 3 28 28 H 1.09000 * 109.47106 * 22.95102 * 1 2 3 29 29 H 1.08992 * 109.47200 * 142.95124 * 1 2 3 30 30 H 1.08009 * 126.81087 * 180.31077 * 5 4 3 31 31 H 0.96998 * 120.00130 * 4.79158 * 9 7 6 32 32 H 1.08993 * 109.47786 * 85.49162 * 11 10 9 33 33 H 1.09009 * 109.46955 * 205.49153 * 11 10 9 34 34 H 0.97000 * 120.00144 * 4.90086 * 12 11 10 35 35 H 1.09007 * 109.47118 * 300.00124 * 15 13 12 36 36 H 1.08997 * 109.46733 * 59.99725 * 15 13 12 37 37 H 0.97001 * 119.99525 * 180.02562 * 20 19 17 38 38 H 1.08999 * 117.49474 * 0.02562 * 25 10 9 39 39 H 1.08996 * 117.49896 * 145.01523 * 25 10 9 40 40 H 1.09000 * 117.49552 * 252.51075 * 26 25 10 41 41 H 1.08993 * 117.51631 * 107.48137 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4613 0.6996 -0.0005 5 6 3.5551 -0.6303 0.0052 6 6 2.2712 -1.1082 -0.0006 7 6 1.8462 -2.5179 -0.0007 8 8 2.6739 -3.4024 -0.1074 9 7 0.5399 -2.8279 0.1172 10 6 0.1263 -4.2293 0.2229 11 6 0.0517 -4.9967 -1.0986 12 7 -0.3905 -4.0933 -2.1636 13 6 -0.6250 -4.5737 -3.4008 14 8 -0.4703 -5.7541 -3.6323 15 6 -1.0804 -3.6444 -4.4963 16 16 -1.3070 -4.5823 -6.0277 17 6 -1.8241 -3.2878 -7.1056 18 1 -1.9116 -2.2778 -6.7333 19 6 -2.1188 -3.5662 -8.4330 20 7 -2.0116 -4.7973 -8.8868 21 14 -2.6662 -2.1939 -9.5759 22 1 -1.4769 -1.5871 -10.2260 23 1 -3.5706 -2.7468 -10.6158 24 1 -3.3863 -1.1565 -8.7944 25 6 -0.8947 -4.5849 1.3055 26 6 0.5679 -5.0044 1.4660 27 1 -0.3633 -0.1260 1.0199 28 1 -0.3633 0.9463 -0.4007 29 1 -0.3633 -0.8201 -0.6191 30 1 4.4633 -1.2150 0.0109 31 1 -0.1264 -2.1232 0.1322 32 1 1.0366 -5.3936 -1.3444 33 1 -0.6575 -5.8189 -1.0018 34 1 -0.5147 -3.1492 -1.9784 35 1 -2.0248 -3.1810 -4.2105 36 1 -0.3287 -2.8708 -4.6523 37 1 -2.2173 -4.9917 -9.8146 38 1 -1.2590 -3.7760 1.9389 39 1 -1.6200 -5.3655 1.0763 40 1 0.8048 -6.0611 1.3424 41 1 1.1664 -4.4717 2.2049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759876987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:15 Heat of formation + Delta-G solvation = 41.344916 kcal Electronic energy + Delta-G solvation = -26575.096621 eV Core-core repulsion = 22619.192213 eV Total energy + Delta-G solvation = -3955.904408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.47140 -41.42684 -40.40704 -38.56245 -36.24738 -35.30973 -34.59163 -34.08110 -32.30925 -31.32370 -29.25655 -27.91054 -27.35092 -25.55057 -23.63904 -23.55772 -22.31906 -21.81701 -21.16090 -19.89019 -19.17726 -18.32182 -17.93359 -17.81462 -17.63432 -16.89045 -16.78174 -16.60302 -16.18008 -15.90305 -15.67495 -15.44177 -15.12302 -14.76859 -14.59750 -14.37460 -14.36103 -13.96618 -13.50656 -13.40851 -13.24102 -13.17876 -12.90426 -12.62561 -12.42625 -12.31113 -12.07613 -11.74738 -11.62290 -11.32875 -11.17769 -11.15278 -11.01492 -10.74511 -10.41981 -10.29000 -10.15331 -8.68102 -8.35659 -6.13947 -0.26624 1.03261 1.12669 1.24320 1.41834 1.44888 1.54015 1.56244 1.60829 1.84859 2.19296 2.26378 2.62569 2.96690 2.98808 3.29732 3.37543 3.52541 3.67617 3.78656 3.82766 3.89383 3.99143 4.08226 4.24541 4.28383 4.40332 4.45217 4.55744 4.57058 4.68136 4.75708 4.88136 4.99115 5.16019 5.18478 5.21680 5.37240 5.40730 6.08349 6.18607 6.39443 6.80479 7.05767 7.14627 7.16743 8.73519 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011213 B = 0.002880 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.459966 B = 9718.399774 C =11398.169346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.258 5.258 3 N -0.067 5.067 4 N -0.304 5.304 5 C 0.023 3.977 6 C -0.081 4.081 7 C 0.605 3.395 8 O -0.534 6.534 9 N -0.685 5.685 10 C 0.064 3.936 11 C 0.154 3.846 12 N -0.707 5.707 13 C 0.533 3.467 14 O -0.562 6.562 15 C -0.129 4.129 16 S -0.150 6.150 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.255 1.255 25 C -0.130 4.130 26 C -0.157 4.157 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.116 0.884 30 H 0.213 0.787 31 H 0.414 0.586 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.408 0.592 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.271 0.729 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 9.751 27.369 29.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.058 5.058 3 N -0.049 5.049 4 N -0.166 5.166 5 C -0.138 4.138 6 C -0.214 4.214 7 C 0.389 3.611 8 O -0.408 6.408 9 N -0.343 5.343 10 C -0.024 4.024 11 C 0.028 3.972 12 N -0.361 5.361 13 C 0.319 3.681 14 O -0.440 6.440 15 C -0.280 4.280 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.179 1.179 25 C -0.168 4.168 26 C -0.195 4.195 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.134 0.866 30 H 0.229 0.771 31 H 0.258 0.742 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.245 0.755 35 H 0.135 0.865 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.728 8.581 26.809 28.159 hybrid contribution -0.483 1.302 -0.799 1.602 sum 0.245 9.883 26.011 27.826 Atomic orbital electron populations 1.23216 0.69496 1.08855 1.08095 1.48128 1.10860 1.03070 1.43753 1.78190 0.96912 1.12333 1.17444 1.74976 1.09746 1.13287 1.18630 1.24194 0.98110 0.90984 1.00503 1.22194 0.92473 0.89439 1.17327 1.16774 0.83220 0.84896 0.76187 1.90898 1.52896 1.47843 1.49122 1.45529 1.06417 1.07902 1.74468 1.20746 1.08662 0.82441 0.90519 1.21069 0.99820 0.92206 0.84061 1.45521 1.69332 1.12771 1.08445 1.20092 0.76373 0.88132 0.83540 1.90706 1.52281 1.18664 1.82329 1.23359 1.05682 1.01878 0.97100 1.85634 1.88501 1.16032 1.02142 1.23201 1.52614 0.95907 0.97691 0.89806 1.26124 0.94793 0.99082 0.99125 1.70186 1.46901 1.21060 1.16613 0.84962 0.78297 0.77494 0.77291 1.19603 1.20302 1.17907 1.23662 0.92192 1.04140 0.96781 1.23339 0.98473 1.01301 0.96382 0.84468 0.84555 0.86644 0.77078 0.74201 0.93316 0.89566 0.75501 0.86512 0.87848 0.91996 0.85276 0.86074 0.87414 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.05 9.93 127.77 1.27 1.31 16 2 N -0.26 -3.37 3.79 -356.78 -1.35 -4.72 16 3 N -0.07 -1.35 13.14 37.02 0.49 -0.86 16 4 N -0.30 -7.10 12.35 -57.50 -0.71 -7.81 16 5 C 0.02 0.46 11.87 84.18 1.00 1.46 16 6 C -0.08 -1.38 6.98 40.41 0.28 -1.10 16 7 C 0.61 10.63 7.70 86.61 0.67 11.30 16 8 O -0.53 -13.80 16.69 -4.07 -0.07 -13.86 16 9 N -0.68 -7.00 4.17 -426.33 -1.78 -8.77 16 10 C 0.06 0.79 1.98 3.61 0.01 0.80 16 11 C 0.15 3.23 5.90 86.38 0.51 3.74 16 12 N -0.71 -16.39 5.46 -463.06 -2.53 -18.92 16 13 C 0.53 18.89 7.85 87.66 0.69 19.58 16 14 O -0.56 -25.54 15.86 -3.02 -0.05 -25.59 16 15 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 16 S -0.15 -8.20 20.57 -56.49 -1.16 -9.37 16 17 C -0.55 -30.63 9.50 67.95 0.65 -29.98 16 18 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -55.57 13.22 21.65 0.29 -55.28 16 21 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 25 C -0.13 -0.75 10.10 30.60 0.31 -0.44 16 26 C -0.16 -1.70 9.77 30.60 0.30 -1.40 16 27 H 0.14 -0.69 8.14 -2.39 -0.02 -0.71 16 28 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.12 -0.25 5.99 -2.39 -0.01 -0.27 16 30 H 0.21 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.41 1.22 4.65 -92.71 -0.43 0.78 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.80 7.90 -2.38 -0.02 1.78 16 34 H 0.41 6.44 7.57 -92.71 -0.70 5.74 16 35 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 36 H 0.10 3.60 8.14 -2.40 -0.02 3.58 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.12 0.62 8.05 -2.39 -0.02 0.60 16 40 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -89.65 372.83 1.69 -87.96 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -0.04 Total: 10.22 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.58 Total: 2.06 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -5.60 Total: -96.37 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.12 Total: -39.45 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.37 kcal Total: -89.65 1.69 -87.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759876987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.303 kcal (2) G-P(sol) polarization free energy of solvation -89.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds