Wall clock time and date at job start Tue Mar 31 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47126 * 2 1 4 4 O 1.42904 * 109.47147 * 119.99666 * 2 1 3 5 5 C 1.35949 * 116.99997 * 58.97284 * 4 2 1 6 6 C 1.38705 * 120.02968 * 6.20300 * 5 4 2 7 7 C 1.38148 * 119.97017 * 180.25588 * 6 5 4 8 8 C 1.38453 * 120.03019 * 359.46157 * 7 6 5 9 9 F 1.35099 * 119.97324 * 180.29932 * 8 7 6 10 10 C 1.38461 * 120.05729 * 0.28703 * 8 7 6 11 11 C 1.38144 * 120.03039 * 359.96798 * 10 8 7 12 12 C 1.50701 * 109.47186 * 239.99936 * 2 1 3 13 13 O 1.20824 * 119.99632 * 239.99928 * 12 2 1 14 14 O 1.34228 * 119.99909 * 59.99835 * 12 2 1 15 15 C 1.45196 * 116.99678 * 179.97438 * 14 12 2 16 16 C 1.50700 * 109.47029 * 179.97438 * 15 14 12 17 17 O 1.21287 * 119.99905 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00156 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99995 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47323 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00076 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00170 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00229 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99930 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47160 * 89.99723 * 24 22 20 26 26 H 1.48496 * 109.46860 * 209.99964 * 24 22 20 27 27 H 1.48498 * 109.47010 * 329.99907 * 24 22 20 28 28 H 1.09002 * 109.47275 * 311.94580 * 1 2 3 29 29 H 1.08997 * 109.47133 * 71.95228 * 1 2 3 30 30 H 1.09005 * 109.46585 * 191.94816 * 1 2 3 31 31 H 1.08995 * 109.47532 * 175.25562 * 3 2 1 32 32 H 1.08996 * 109.46815 * 295.25532 * 3 2 1 33 33 H 1.09003 * 109.47250 * 55.25302 * 3 2 1 34 34 H 1.08005 * 120.01629 * 0.02562 * 6 5 4 35 35 H 1.07999 * 119.98509 * 179.74636 * 7 6 5 36 36 H 1.07998 * 119.98108 * 179.97438 * 10 8 7 37 37 H 1.08001 * 120.01498 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.47259 * 299.99453 * 15 14 12 39 39 H 1.08997 * 109.47300 * 60.00127 * 15 14 12 40 40 H 0.97000 * 120.00168 * 0.02562 * 18 16 15 41 41 H 1.09008 * 109.47449 * 300.00222 * 19 18 16 42 42 H 1.08997 * 109.47449 * 60.00546 * 19 18 16 43 43 H 0.96996 * 120.00075 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 1.6234 -1.9675 1.3321 6 6 0.9148 -2.6150 0.3308 7 6 0.5217 -3.9282 0.5023 8 6 0.8444 -4.6016 1.6682 9 9 0.4646 -5.8877 1.8321 10 6 1.5563 -3.9580 2.6663 11 6 1.9460 -2.6432 2.4997 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1195 14 8 1.7080 -0.2519 -2.4496 15 6 2.2277 -0.9858 -3.5896 16 6 1.7626 -0.3294 -4.8639 17 8 1.0625 0.6599 -4.8160 18 7 2.1255 -0.8410 -6.0568 19 6 1.6729 -0.2032 -7.2956 20 6 2.2123 -0.9648 -8.4788 21 1 2.8308 -1.8365 -8.3236 22 6 1.9171 -0.5482 -9.7596 23 7 1.1644 0.5135 -9.9487 24 14 2.5852 -1.4927 -11.2263 25 1 1.6195 -2.5518 -11.6146 26 1 2.7836 -0.5616 -12.3659 27 1 3.8838 -2.1155 -10.8642 28 1 -0.3634 0.6869 0.7644 29 1 -0.3633 0.3184 -0.9771 30 1 -0.3633 -1.0055 0.2128 31 1 3.1266 1.4438 0.0850 32 1 1.7477 1.9311 -0.9294 33 1 1.6089 1.9803 0.8444 34 1 0.6671 -2.0916 -0.5809 35 1 -0.0337 -4.4313 -0.2755 36 1 1.8070 -4.4843 3.5754 37 1 2.5017 -2.1416 3.2782 38 1 3.3172 -0.9845 -3.5565 39 1 1.8643 -2.0128 -3.5568 40 1 2.6857 -1.6320 -6.0951 41 1 0.5833 -0.2056 -7.3285 42 1 2.0352 0.8242 -7.3287 43 1 0.9565 0.8064 -10.8497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007295320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:41 Heat of formation + Delta-G solvation = -163.728840 kcal Electronic energy + Delta-G solvation = -29072.267647 eV Core-core repulsion = 24612.504989 eV Total energy + Delta-G solvation = -4459.762657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.05751 -41.96634 -39.98730 -38.77136 -37.80646 -36.48438 -34.33752 -33.99126 -32.47179 -31.55730 -29.84018 -29.30700 -27.77312 -26.83569 -24.61975 -23.39138 -22.96465 -22.49343 -20.80297 -20.04961 -18.90618 -18.04218 -17.65453 -17.29335 -17.02615 -16.75500 -16.45265 -15.82102 -15.62992 -15.29707 -15.25108 -14.95273 -14.62833 -14.49764 -14.22578 -13.81658 -13.73892 -13.49177 -13.21518 -13.10105 -12.86112 -12.71911 -12.61029 -12.49792 -12.26918 -12.07279 -12.04429 -11.83118 -11.33952 -11.18446 -11.06183 -10.96638 -10.83537 -10.55880 -10.39114 -9.49621 -9.44100 -9.28666 -8.83719 -8.37512 -8.06821 -6.24396 -4.32075 0.83831 0.89950 1.74966 2.03100 2.61333 3.06673 3.19957 3.25089 3.26456 3.28567 3.73578 4.01800 4.17656 4.20227 4.26416 4.38038 4.40706 4.42842 4.77223 4.90363 4.96953 5.05760 5.08835 5.12505 5.15948 5.19855 5.23169 5.28256 5.36717 5.52316 5.67825 5.70122 5.79352 5.80968 5.89505 6.05966 6.32901 6.84879 7.14857 7.21219 7.37310 7.39057 7.55398 7.86383 8.41569 8.64051 8.87745 9.34547 10.85670 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.002238 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.572825 B =12509.214678 C =13727.619436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.130 3.870 3 C -0.138 4.138 4 O -0.280 6.280 5 C 0.127 3.873 6 C -0.159 4.159 7 C -0.116 4.116 8 C 0.062 3.938 9 F -0.142 7.142 10 C -0.118 4.118 11 C -0.120 4.120 12 C 0.434 3.566 13 O -0.487 6.487 14 O -0.320 6.320 15 C 0.046 3.954 16 C 0.500 3.500 17 O -0.534 6.534 18 N -0.705 5.705 19 C 0.251 3.749 20 C -0.546 4.546 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.884 5.884 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.393 0.607 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.263 -4.361 25.880 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.090 3.910 3 C -0.195 4.195 4 O -0.194 6.194 5 C 0.082 3.918 6 C -0.178 4.178 7 C -0.135 4.135 8 C 0.042 3.958 9 F -0.121 7.121 10 C -0.136 4.136 11 C -0.139 4.139 12 C 0.275 3.725 13 O -0.375 6.375 14 O -0.235 6.235 15 C -0.031 4.031 16 C 0.283 3.717 17 O -0.411 6.411 18 N -0.355 5.355 19 C 0.131 3.869 20 C -0.585 4.585 21 H 0.082 0.918 22 C -0.139 4.139 23 N -0.521 5.521 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.197 1.197 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.226 0.774 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.013 -3.732 25.848 26.116 hybrid contribution 0.631 -1.396 -1.228 1.963 sum 0.619 -5.128 24.620 25.156 Atomic orbital electron populations 1.22845 0.91145 1.05242 1.06057 1.21451 0.96120 0.93389 0.80026 1.21895 1.02983 0.89261 1.05375 1.86276 1.70282 1.22364 1.40475 1.18847 0.94919 0.83846 0.94228 1.21314 1.01730 0.95668 0.99045 1.20942 1.01076 0.94526 0.96909 1.17558 1.02098 0.79762 0.96336 1.91491 1.89728 1.34981 1.95863 1.20909 0.98958 0.94584 0.99181 1.20201 1.03439 0.93757 0.96483 1.24316 0.78666 0.83550 0.85981 1.90781 1.34774 1.24937 1.86967 1.86557 1.68694 1.54544 1.13719 1.22958 1.00603 0.96189 0.83382 1.19824 0.82109 0.85323 0.84457 1.90713 1.37645 1.25617 1.87120 1.46380 1.51653 1.31288 1.06200 1.19191 0.95877 0.93749 0.78053 1.21196 1.33401 1.13325 0.90535 0.91769 1.24950 0.94833 0.95053 0.99112 1.69965 1.36086 1.23627 1.22464 0.86389 0.79293 0.79509 0.81586 1.20398 1.20939 1.19708 0.89325 0.88528 0.89956 0.90638 0.88152 0.89561 0.84973 0.84412 0.84034 0.84054 0.88293 0.88431 0.77388 0.95218 0.95192 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 8.15 37.16 0.30 -1.32 16 2 C 0.13 1.31 1.05 -91.77 -0.10 1.21 16 3 C -0.14 -1.10 8.79 37.16 0.33 -0.77 16 4 O -0.28 -3.03 9.63 -39.53 -0.38 -3.41 16 5 C 0.13 1.38 5.53 -39.24 -0.22 1.17 16 6 C -0.16 -1.77 5.53 -39.44 -0.22 -1.99 16 7 C -0.12 -1.22 10.02 -39.54 -0.40 -1.62 16 8 C 0.06 0.64 7.30 -39.42 -0.29 0.36 16 9 F -0.14 -1.56 17.27 2.25 0.04 -1.53 16 10 C -0.12 -1.04 10.02 -39.53 -0.40 -1.44 16 11 C -0.12 -1.10 9.98 -39.44 -0.39 -1.50 16 12 C 0.43 5.52 4.64 36.01 0.17 5.69 16 13 O -0.49 -7.11 13.56 -25.48 -0.35 -7.46 16 14 O -0.32 -4.54 9.26 -45.90 -0.42 -4.97 16 15 C 0.05 0.65 5.94 36.01 0.21 0.87 16 16 C 0.50 9.47 7.91 -10.99 -0.09 9.38 16 17 O -0.53 -12.29 16.50 -14.11 -0.23 -12.52 16 18 N -0.71 -14.01 5.55 -61.47 -0.34 -14.35 16 19 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 20 C -0.55 -14.34 9.28 -34.44 -0.32 -14.66 16 21 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.88 -25.40 13.29 55.43 0.74 -24.66 16 24 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 H 0.09 0.56 8.06 -51.93 -0.42 0.14 16 29 H 0.10 0.84 7.83 -51.93 -0.41 0.44 16 30 H 0.08 0.70 4.85 -51.93 -0.25 0.45 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.82 8.00 -51.93 -0.42 0.41 16 33 H 0.09 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.13 1.50 3.85 -52.48 -0.20 1.30 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.10 1.24 8.13 -51.93 -0.42 0.81 16 39 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 40 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 41 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -33.08 370.70 -7.28 -40.36 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.37 Total: 4.20 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.53 Total: 3.37 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.40 Total: -39.01 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.38 Total: -28.36 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.08 -7.28 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007295320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.365 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds